View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4809-Insertion-4 (Length: 665)
Name: NF4809-Insertion-4
Description: NF4809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4809-Insertion-4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 560; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 8 - 614
Target Start/End: Complemental strand, 41563845 - 41563240
Alignment:
| Q |
8 |
cttggaatattgaattttgttgcaattttagaagtgtaaggaaaaccaacatcagagattatgcaacttggctttggtgttaacttttcaaaagcttctt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
41563845 |
cttggaatattgaattttgttgcaattttagaagtgtaaggaaaaccaacatcagagattatgcaacttggttttggtgttaacttttcaaaagcttctt |
41563746 |
T |
|
| Q |
108 |
ctgcttgatcttgtagaagggtatttgctactttgaagaaagtatgagccatggacattgatggaagcatgtcaaaattctcacatccttctggaaatcc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41563745 |
ctgcttgatcttgtagaagggtatttgctactttgaagaaagtatgagccatagacattgatggaagcatgtcaaaattctcacatccttctggaaatcc |
41563646 |
T |
|
| Q |
208 |
agcatctttagaagggaattgaagttgaagtaattggatttgtgaattttgagaaaaagtttgtgaaaaacgagaagcgttgtgtggagttgtgacaatg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41563645 |
agcatctttagaagggaattgaagttgaagtaattggatttgtgaattttgagaaaaagtttgtgaaaaacgagaagcgttgtgtggagttgtgacaatg |
41563546 |
T |
|
| Q |
308 |
gtaacgatgatgttttgtttttgatgtgttaatgttgttgcaagatctatcataggaagcatgtgtcctggggacataagtagaaataacacaaagtgaa |
407 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
41563545 |
gtaacgatgatgttttgtttttgatgtgctaatgttgttgcaagatctatcatgggaagcatgtgtcctggggacataagtggaaataacacaaagtgaa |
41563446 |
T |
|
| Q |
408 |
gttgaggtgcttgagactccattttatt-ttttggaatgaatgattgaatgaagatttctataatgcacttatttactttagaacaatattaattattta |
506 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41563445 |
gttgaggtgcttgagactccattttatttttttggaatgaatgattgaatgaagatttctataatgcacttatttactttagaacaatattaattattta |
41563346 |
T |
|
| Q |
507 |
tttattcatatgaatatgatgtaagcgcctacctatgcaagattatgatagaagttttggcataagaggtttgaaatgtcaaaagtctagtttgtacact |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
41563345 |
tttattcatatgaatatgatgtaagcgcctacctatgcaagattatgatagaag-tttggcataaga-gttttaaatgtcaaaagtctagtttgtacact |
41563248 |
T |
|
| Q |
607 |
tgttgttt |
614 |
Q |
| |
|
|||||||| |
|
|
| T |
41563247 |
tgttgttt |
41563240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 613 - 665
Target Start/End: Complemental strand, 41563206 - 41563155
Alignment:
| Q |
613 |
ttgggcaatcatttgagtaaaatagttacattggtca-ccaaaatttcaagatt |
665 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
41563206 |
ttgggcaatcatt-gagtaaa-tagttacattggtcatccaaaatttcaagatt |
41563155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University