View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4809-Insertion-7 (Length: 384)
Name: NF4809-Insertion-7
Description: NF4809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4809-Insertion-7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 6 - 384
Target Start/End: Complemental strand, 6701019 - 6700641
Alignment:
| Q |
6 |
cagaaaattacattgaaacagctccaaatcatgcagaagaaaaacaccagattgtaaaagtggaaacttctataggcagctcaatatagaggatgagttt |
105 |
Q |
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| T |
6701019 |
cagaaaattacattgaaccagctccaaattatgctgaagaaaaataccagattgtaaaagtggaaactcctataggcagctcaatatagaggatgagttt |
6700920 |
T |
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| Q |
106 |
tgagtgagtatatattcttttgctacacatgtgtagcacactttgcatccattttactcttaatttcaataatactttcatcagctttttcaaaaagaaa |
205 |
Q |
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| T |
6700919 |
tgagcgagtgtatattcttttgctacacatgtgtactacactttgcatccattttactcttaatttcaataaaaatttcatcagctttttcaaaaagaaa |
6700820 |
T |
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| Q |
206 |
gtacattcaatgccctgcaaactaatatgcatgagtaaggaattgcaatgccctgcaaactgaccattcaacagtagacttaatatcccctaaataaaaa |
305 |
Q |
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| T |
6700819 |
gtacattcaatgccctacaaactaatatgcatgagtaaggaattgcaatgccctgcaaactaaccatttaacagtagacttaatatcccctaaataaaaa |
6700720 |
T |
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| Q |
306 |
gtatgaaaaaggaactttataagaatgaggtgatatctcaatagaaaacaacaaaattcagaattaattgtaatttgca |
384 |
Q |
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| T |
6700719 |
gtatgaaaaaggaaatttataagaatggggtaatgtctcaatagaaaacaacaaaattcagaattaattgtaatttgca |
6700641 |
T |
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Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 42 - 201
Target Start/End: Complemental strand, 32149991 - 32149831
Alignment:
| Q |
42 |
aagaaaaacaccagatt--gtaaaagtggaaacttctataggcagctcaatatagaggatgagttttgagtgagtatatattcttttgctacacatgtgt |
139 |
Q |
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| T |
32149991 |
aagaaaaacatcagattcagtaaaagtggaaactcctgtagaaagctcaatatagaggatgagtttagagtgaat-tatattatttggctacacatgtgt |
32149893 |
T |
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| Q |
140 |
agcacactttgcatccattttactcttaatttcaataatactttcatcagctttttcaaaaa |
201 |
Q |
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| T |
32149892 |
agcacactttgcatccattttactcttaatttcaataaaacttccatcacctttttcaaaaa |
32149831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 42 - 137
Target Start/End: Complemental strand, 26842210 - 26842113
Alignment:
| Q |
42 |
aagaaaaacaccagatt--gtaaaagtggaaacttctataggcagctcaatatagaggatgagttttgagtgagtatatattcttttgctacacatgt |
137 |
Q |
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| T |
26842210 |
aagaaaaacacctgattcagtaaaagttcaaactcctataggcaactcaatatagaggatgagttttgagtgaatatatattcttttgctgcacatgt |
26842113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 218
Target Start/End: Original strand, 27639282 - 27639357
Alignment:
| Q |
144 |
cactttgcatcc-attttactcttaatttcaataatactttcatcagctttttcaaaaagaaagtacattcaatgc |
218 |
Q |
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| T |
27639282 |
cactttgcatcccattttactctttatttcaataaaattttcattatctttttcaaaaagatagtacattaaatgc |
27639357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 27639025 - 27639073
Alignment:
| Q |
78 |
taggcagctcaatatagaggatgagttttgagtgagtatatattctttt |
126 |
Q |
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| T |
27639025 |
taggcagttgaatatagaggatgagttttgagtaaatatatattctttt |
27639073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 39265219 - 39265283
Alignment:
| Q |
83 |
agctcaatatagaggatgagttttgagtgagtatatattcttttgctacacatgtgtagcacact |
147 |
Q |
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| T |
39265219 |
agctcattatagagtatgaaatttgagtgaatatctattcttttgcagcacatttgtagcacact |
39265283 |
T |
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