View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4809_high_5 (Length: 251)
Name: NF4809_high_5
Description: NF4809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4809_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 41832458 - 41832638
Alignment:
| Q |
1 |
ttttgcttccacttcacataatctctcaacacgtgtagttgaagatatatagaagtccaacatttacaagggttaatcaataaaagctaggacggcacac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41832458 |
ttttgcttccacttcacataatctctcaacacgtgtagttgaagatatatagaagtccaacatttacaagggttaatcaataaaagctaggacggcacac |
41832557 |
T |
|
| Q |
101 |
actttaattaataatgaatattttcctgtttcttagtttaatatttttaacataagatcaacatgcttaagttttatcacc |
181 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41832558 |
actttaattaataatgaatattttcctgtttcttagtttaatatttttaacataagatcaacatgcttaagttttatcacc |
41832638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 41832663 - 41832699
Alignment:
| Q |
206 |
cagactcaaatatgtccattttaatcaatagtattat |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41832663 |
cagactcaaatatgtccattttaatcaatagtattat |
41832699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University