View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4809_low_2 (Length: 433)

Name: NF4809_low_2
Description: NF4809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4809_low_2
NF4809_low_2
[»] scaffold0001 (1 HSPs)
scaffold0001 (17-423)||(66086-66492)
[»] chr1 (5 HSPs)
chr1 (135-221)||(52184530-52184616)
chr1 (378-423)||(5500668-5500713)
chr1 (386-423)||(15964415-15964452)
chr1 (377-423)||(47555070-47555116)
chr1 (360-423)||(4963543-4963607)
[»] chr5 (6 HSPs)
chr5 (378-423)||(36055563-36055608)
chr5 (378-423)||(13381216-13381261)
chr5 (378-423)||(21321065-21321110)
chr5 (386-423)||(22616805-22616842)
chr5 (384-423)||(10237727-10237766)
chr5 (384-424)||(25654662-25654702)
[»] chr3 (3 HSPs)
chr3 (378-418)||(435328-435368)
chr3 (384-423)||(32180445-32180484)
chr3 (384-424)||(7758129-7758169)
[»] chr8 (3 HSPs)
chr8 (382-423)||(7291034-7291075)
chr8 (384-423)||(3859360-3859399)
chr8 (384-420)||(3038723-3038759)
[»] chr7 (3 HSPs)
chr7 (359-423)||(10674925-10674990)
chr7 (385-423)||(37853990-37854028)
chr7 (378-423)||(23402060-23402105)
[»] chr2 (4 HSPs)
chr2 (378-423)||(6178089-6178134)
chr2 (378-419)||(17244796-17244837)
chr2 (386-423)||(18779103-18779140)
chr2 (395-423)||(15651471-15651499)
[»] chr6 (1 HSPs)
chr6 (377-423)||(6613680-6613726)
[»] chr4 (1 HSPs)
chr4 (386-423)||(2266553-2266590)


Alignment Details
Target: scaffold0001 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 17 - 423
Target Start/End: Complemental strand, 66492 - 66086
Alignment:
Q  17 gatttgtccatccgaaaaggtgtggnnnnnnnagaaaacaatgaaggataaaaataattatttttagtagtctatttggttnnnnnnnnnnttagaccta 116  Q
    |||||||||||||||||||||||||       ||||||||||||||||||||| ||||||||||||| |||||||||||||          |||||||||    
T  66492 gatttgtccatccgaaaaggtgtggtttttt-agaaaacaatgaaggataaaa-taattatttttagaagtctatttggttaaaaaaaaaattagaccta 66395  T
Q  117 acagacatacctacttaattaattaagtaaattacaaataannnnnnnattactgtcattattatattcaatttcatactttgtattaaattataaactt 216  Q
    |||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  66394 acagacatacctacttaattaattaagtaaattacaaataatttttttattactgtcattattatattcaatttcacactttgtattaaattataaactt 66295  T
Q  217 gctaannnnnnnaattcaagcatattagcttacannnnnnncttcatatgtaaacat--tattataaacttaaattcaaaatatgatatcagatagacta 314  Q
    |||||       ||||||||||||||||||||||       ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  66294 gctaatttttttaattcaagcatattagcttacatttttttcttcatatgtaaacatattattataaacttaaattcaaaatatgatatcagatagacta 66195  T
Q  315 aaattttctaaataaacatgtcatagatcatttgtaaaaagggtgcttctacggtgtaacatgaaactaacttttttggaaaaattattttgtttagcca 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  66194 aaattttctaaataaacatgtcatagatcatttgtaaaaagggtgcttctacggtgtaacatgaaactaacttttttgaaaaaattattttgtttagcca 66095  T
Q  415 atagtataa 423  Q
    |||||||||    
T  66094 atagtataa 66086  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 135 - 221
Target Start/End: Complemental strand, 52184616 - 52184530
Alignment:
Q  135 ttaattaagtaaattacaaataannnnnnnattactgtcattattatattcaatttcatactttgtattaaattataaacttgctaa 221  Q
    ||||||||||||| |||||||||       |||||||| ||||||||||| ||||||| |||||||||| ||||||||| |||||||    
T  52184616 ttaattaagtaaaatacaaataatttttttattactgttattattatattaaatttcacactttgtattgaattataaatttgctaa 52184530  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 378 - 423
Target Start/End: Complemental strand, 5500713 - 5500668
Alignment:
Q  378 aaactaacttttttggaaaaattattttgtttagccaatagtataa 423  Q
    ||||||||||||||| |||| |||||||||||||| ||||||||||    
T  5500713 aaactaacttttttgaaaaagttattttgtttagctaatagtataa 5500668  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 386 - 423
Target Start/End: Complemental strand, 15964452 - 15964415
Alignment:
Q  386 ttttttggaaaaattattttgtttagccaatagtataa 423  Q
    |||||| |||||||||||||||||||||||||||||||    
T  15964452 ttttttagaaaaattattttgtttagccaatagtataa 15964415  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 423
Target Start/End: Complemental strand, 47555116 - 47555070
Alignment:
Q  377 gaaactaacttttttggaaaaattattttgtttagccaatagtataa 423  Q
    |||||| ||||||||| |||| |||||||||||| ||||||||||||    
T  47555116 gaaactgacttttttgaaaaagttattttgtttaaccaatagtataa 47555070  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 423
Target Start/End: Original strand, 4963543 - 4963607
Alignment:
Q  360 cttctacggtgtaacatgaaactaacttttttggaaaa-attattttgtttagccaatagtataa 423  Q
    ||||||||||| |  | |||||| ||||||||| |||| ||||||||||||||||||||| ||||    
T  4963543 cttctacggtgcagtaagaaactgacttttttgaaaaaaattattttgtttagccaatagaataa 4963607  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 423
Target Start/End: Original strand, 36055563 - 36055608
Alignment:
Q  378 aaactaacttttttggaaaaattattttgtttagccaatagtataa 423  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||    
T  36055563 aaactaacttttttggaaaagttattttgtttagctaatagtataa 36055608  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 378 - 423
Target Start/End: Complemental strand, 13381261 - 13381216
Alignment:
Q  378 aaactaacttttttggaaaaattattttgtttagccaatagtataa 423  Q
    ||||||||| |||| ||||||||||||||||||| |||||||||||    
T  13381261 aaactaactattttagaaaaattattttgtttagtcaatagtataa 13381216  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 378 - 423
Target Start/End: Complemental strand, 21321110 - 21321065
Alignment:
Q  378 aaactaacttttttggaaaaattattttgtttagccaatagtataa 423  Q
    ||||| ||||||||| |||| |||||||||||||||||||||||||    
T  21321110 aaactgacttttttgaaaaagttattttgtttagccaatagtataa 21321065  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 386 - 423
Target Start/End: Complemental strand, 22616842 - 22616805
Alignment:
Q  386 ttttttggaaaaattattttgtttagccaatagtataa 423  Q
    |||||||||||| |||||||||||||||||||||||||    
T  22616842 ttttttggaaaagttattttgtttagccaatagtataa 22616805  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 423
Target Start/End: Complemental strand, 10237766 - 10237727
Alignment:
Q  384 acttttttggaaaaattattttgtttagccaatagtataa 423  Q
    |||||||| ||||| |||||||||||||||||||||||||    
T  10237766 acttttttagaaaagttattttgtttagccaatagtataa 10237727  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 424
Target Start/End: Complemental strand, 25654702 - 25654662
Alignment:
Q  384 acttttttggaaaaattattttgtttagccaatagtataat 424  Q
    |||||||| ||||| |||||||||||| |||||||||||||    
T  25654702 acttttttagaaaagttattttgtttaaccaatagtataat 25654662  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 418
Target Start/End: Complemental strand, 435368 - 435328
Alignment:
Q  378 aaactaacttttttggaaaaattattttgtttagccaatag 418  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  435368 aaactaacttttttggaaaagttattttgtttagccaatag 435328  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 423
Target Start/End: Original strand, 32180445 - 32180484
Alignment:
Q  384 acttttttggaaaaattattttgtttagccaatagtataa 423  Q
    |||| ||||||||| |||||||||||||||||||||||||    
T  32180445 acttctttggaaaagttattttgtttagccaatagtataa 32180484  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 424
Target Start/End: Original strand, 7758129 - 7758169
Alignment:
Q  384 acttttttggaaaaattattttgtttagccaatagtataat 424  Q
    ||||||||| |||| ||||||||||||| ||||||||||||    
T  7758129 acttttttgaaaaagttattttgtttagtcaatagtataat 7758169  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 382 - 423
Target Start/End: Complemental strand, 7291075 - 7291034
Alignment:
Q  382 taacttttttggaaaaattattttgtttagccaatagtataa 423  Q
    ||||||||||| |||||||||||||||||| |||||||||||    
T  7291075 taacttttttgaaaaaattattttgtttaggcaatagtataa 7291034  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 423
Target Start/End: Complemental strand, 3859399 - 3859360
Alignment:
Q  384 acttttttggaaaaattattttgtttagccaatagtataa 423  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  3859399 acttttttgaaaaagttattttgtttagccaatagtataa 3859360  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 420
Target Start/End: Complemental strand, 3038759 - 3038723
Alignment:
Q  384 acttttttggaaaaattattttgtttagccaatagta 420  Q
    ||||||||  |||||||||||||||||||||||||||    
T  3038759 acttttttaaaaaaattattttgtttagccaatagta 3038723  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 423
Target Start/End: Original strand, 10674925 - 10674990
Alignment:
Q  359 gcttctacggtgtaa-catgaaactaacttttttggaaaaattattttgtttagccaatagtataa 423  Q
    |||||||||||| || || |||||||||||||||  |||||||||||||||||  |||||||||||    
T  10674925 gcttctacggtgcaatcaggaaactaacttttttaaaaaaattattttgtttattcaatagtataa 10674990  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 423
Target Start/End: Original strand, 37853990 - 37854028
Alignment:
Q  385 cttttttggaaaaattattttgtttagccaatagtataa 423  Q
    ||||||||||||| ||||||||||||| |||||||||||    
T  37853990 cttttttggaaaagttattttgtttagtcaatagtataa 37854028  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 423
Target Start/End: Original strand, 23402060 - 23402105
Alignment:
Q  378 aaactaacttttttggaaaaattattttgtttagccaatagtataa 423  Q
    ||||| ||||||||  |||| |||||||||||||||||||||||||    
T  23402060 aaactgacttttttaaaaaagttattttgtttagccaatagtataa 23402105  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 378 - 423
Target Start/End: Complemental strand, 6178134 - 6178089
Alignment:
Q  378 aaactaacttttttggaaaaattattttgtttagccaatagtataa 423  Q
    ||||| |||||||| ||||| |||||||||||||||||||||||||    
T  6178134 aaactgacttttttagaaaagttattttgtttagccaatagtataa 6178089  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 419
Target Start/End: Original strand, 17244796 - 17244837
Alignment:
Q  378 aaactaacttttttggaaaaattattttgtttagccaatagt 419  Q
    ||||| ||||||||| |||||||||||||||||| |||||||    
T  17244796 aaactgacttttttgaaaaaattattttgtttagtcaatagt 17244837  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 423
Target Start/End: Original strand, 18779103 - 18779140
Alignment:
Q  386 ttttttggaaaaattattttgtttagccaatagtataa 423  Q
    |||||||||||| ||||||||||||| |||||||||||    
T  18779103 ttttttggaaaagttattttgtttagtcaatagtataa 18779140  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 395 - 423
Target Start/End: Complemental strand, 15651499 - 15651471
Alignment:
Q  395 aaaattattttgtttagccaatagtataa 423  Q
    |||||||||||||||||||||||||||||    
T  15651499 aaaattattttgtttagccaatagtataa 15651471  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 423
Target Start/End: Original strand, 6613680 - 6613726
Alignment:
Q  377 gaaactaacttttttggaaaaattattttgtttagccaatagtataa 423  Q
    |||||| ||||||||| |||| ||||||||||||| |||||||||||    
T  6613680 gaaactgacttttttgaaaaagttattttgtttagtcaatagtataa 6613726  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 423
Target Start/End: Original strand, 2266553 - 2266590
Alignment:
Q  386 ttttttggaaaaattattttgtttagccaatagtataa 423  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  2266553 tttttaggaaaagttattttgtttagccaatagtataa 2266590  T

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