View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4810-Insertion-1 (Length: 747)
Name: NF4810-Insertion-1
Description: NF4810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4810-Insertion-1 |
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| [»] scaffold1683 (2 HSPs) |
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Alignment Details
Target: scaffold1683 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: scaffold1683
Description:
Target: scaffold1683; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 279 - 713
Target Start/End: Original strand, 1002 - 1445
Alignment:
| Q |
279 |
ggcagcaacaacacttatataaataatgtctaacaataaaagataatcaatttcttcaggttagtgcagcaattaatacactgcacagataatcaaattt |
378 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
1002 |
ggcagcaacaacacttatacaaataatgtctaacaataaaagataatcaatttcttcaggttagtgcaacatttaatacactgcacagataatcaaattt |
1101 |
T |
|
| Q |
379 |
tgttgacttcattttgtttaaa-------------tgaagtgaaaagaaaagatttggattaggattagaaagtaactatggatcatttacgacttcatg |
465 |
Q |
| |
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|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1102 |
tgttgacttcattttgtttaaaaaaacaataatgttgaagcgaaaagaaaagatttggattaggattagaaagtaactatggatcatttacgacttcatg |
1201 |
T |
|
| Q |
466 |
acatattgaagcgtttataaaggattagggaagctgtagatgacccgtagttactttctaccctgattcgagctaaatctcaatctcaatctaaatccaa |
565 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1202 |
gcatattgaagcgtttataaaggattagggaagctgtagatgacccatagttactttctaccctgattcgagctaaatctcaatctcaatctaaatcgaa |
1301 |
T |
|
| Q |
566 |
tacaaaaagaagattttttacttgaaaatttatcgtgggataagttttacttgcccat-tatatgtctttttaacttatcttttgtttcaaatt-gttcc |
663 |
Q |
| |
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||||||||||| |||||||||||| |||||| ||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||| ||||| |
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| T |
1302 |
tacaaaaagaatattttttacttg-aaatttctcgtgggataagttttacttgccattatatatgtc-ttttaacttatcttttgtttcaaattggttcc |
1399 |
T |
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| Q |
664 |
atctaccggtaggattaaagtaaaaatttatttctattacaacagtttat |
713 |
Q |
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||||||| ||| ||||||||||||| ||||||||||||||||| ||||| |
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| T |
1400 |
atctacc-gta-gattaaagtaaaa--ttatttctattacaacaatttat |
1445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1683; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 5 - 268
Target Start/End: Original strand, 594 - 857
Alignment:
| Q |
5 |
acaataatttcatctctatctactgacatgtcttctatcctattgcctacgttttctgactccctcatatatcactatgtgaaggagtccaactcagaat |
104 |
Q |
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||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
594 |
acaataatttcgtctctatctactgacatgtctcctatcctattgcctacgttttctgactccctcatatatcactgtgtgaaggagtccaactcagaat |
693 |
T |
|
| Q |
105 |
tagtgttatagagaaatattaagcactgaatactctcagcacttgcggtacatatactgaattagtgttttcaagatgtatttattattttctagcattt |
204 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
694 |
tagtgttatagagaaatattaagcactgaatactctcagcacttgcggtacatataccgaattagtgttttcaagatgtatttattattttgtagcattt |
793 |
T |
|
| Q |
205 |
taaatgttctctctcaataagtacctcggtagattgctaaggctttagagattttaacatgtaa |
268 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
794 |
taaatgttctctttcaataagtacctcggtagattgctaaggctttagagattttaacatgtaa |
857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 240; Significance: 1e-132; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 279 - 720
Target Start/End: Original strand, 41528341 - 41528788
Alignment:
| Q |
279 |
ggcagcaacaacacttatataaataatgtctaacaataaaagataatcaatttcttcaggttagtgcagcaattaatacactgcacagataatcaaattt |
378 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41528341 |
ggcagcagcaacacttatacaaataatgtctaacaataaaagataatcaatttcttcaggttagtgcagcaattaatacactgcacagataatcaaattt |
41528440 |
T |
|
| Q |
379 |
tgttgacttcattttgtttaaa-------------tgaagtgaaaagaaaagatttggattaggattagaaagtaactatggatcatttacgacttcatg |
465 |
Q |
| |
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|||||||||||||||| |||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
41528441 |
cgttgacttcattttgtctaaagaaacaataatgttaaagcgaaaagaaaagatttggattaggattagaaagtaactatggatcatttacgacttaatg |
41528540 |
T |
|
| Q |
466 |
acatattgaagcgtttataaaggattagggaagctgtagatgacccgtagttactttctaccctgattcgagctaaatctcaatctcaatctaaatccaa |
565 |
Q |
| |
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|| ||||||||||||| |||||||||||||||||||||||||| | || ||||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
41528541 |
gcacattgaagcgtttaaaaaggattagggaagctgtagatgactcatatttactttctaccccgattcgagttaaatctcaatctcaatctaaatccaa |
41528640 |
T |
|
| Q |
566 |
tacaaaaagaaga-ttttttacttgaaaatttatcgtgggataagttttacttgcccattatatgtctttttaacttatcttttgtttcaaatt-gttcc |
663 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| |||||||||||||||||| || ||||||| | || ||||||||| || ||||||||||| ||||| |
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| T |
41528641 |
cacaaaaagaagatttttttacttg-aaattcctcgtgggataagttttac-tggccattatgtctc---ttaacttattttatgtttcaaattggttcc |
41528735 |
T |
|
| Q |
664 |
atctaccggtaggattaaagtaaaaatttatttctattacaacagtttatgagtggt |
720 |
Q |
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||||||| ||| ||||||||||||| ||||||||||||||||| ||||| |||||| |
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| T |
41528736 |
atctacc-gta-gattaaagtaaaa--ttatttctattacaacaatttataagtggt |
41528788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 5 - 268
Target Start/End: Original strand, 41527933 - 41528196
Alignment:
| Q |
5 |
acaataatttcatctctatctactgacatgtcttctatcctattgcctacgttttctgactccctcatatatcactatgtgaaggagtccaactcagaat |
104 |
Q |
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||||||||||| ||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
41527933 |
acaataatttcgtctctatctactgacatgtctcctatcttattgcctacattttctgactccctcatatatcactatgtgaaggagttcaactcggaat |
41528032 |
T |
|
| Q |
105 |
tagtgttatagagaaatattaagcactgaatactctcagcacttgcggtacatatactgaattagtgttttcaagatgtatttattattttctagcattt |
204 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
41528033 |
tagtgttatagagaaatattaagcactgaatactctcagcacttgcggtacatatacggaatttgtgttttcaagatgtatttattattttgtagcattt |
41528132 |
T |
|
| Q |
205 |
taaatgttctctctcaataagtacctcggtagattgctaaggctttagagattttaacatgtaa |
268 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
41528133 |
taaatgttctctctcaataagtacctaggtagattgctaaggctttagagattttaccatgtaa |
41528196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 198 - 268
Target Start/End: Complemental strand, 39889206 - 39889136
Alignment:
| Q |
198 |
agcattttaaatgttctctctcaataagtacctcggtagattgctaaggctttagagattttaacatgtaa |
268 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39889206 |
agcattttaaatgtttactctcaataagtacctttgtagattgctaaggctttagagattttaacatgtaa |
39889136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 39889431 - 39889332
Alignment:
| Q |
9 |
taatttcatctctatctactgacatgtcttctatcctattgcctacgttttctgactccctcatatatcactatgtgaaggagtccaactcagaattagt |
108 |
Q |
| |
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||||||| || |||| ||||||||||||| ||||| ||||||||||||||||| ||| |||||||||||| ||| |||||||||||||| ||||||||| |
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|
| T |
39889431 |
taatttcgtcactatttactgacatgtctcctatcttattgcctacgttttcttact-gctcatatatcaccatgcgaaggagtccaactaagaattagt |
39889333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 321 - 384
Target Start/End: Complemental strand, 39873248 - 39873186
Alignment:
| Q |
321 |
ataatcaatttcttcaggttagtgcagcaattaatacactgcacagataatcaaattttgttga |
384 |
Q |
| |
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||||||| ||||||| |||||||||| |||||||||||||||| |||||||||||||||||||| |
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|
| T |
39873248 |
ataatcactttcttc-ggttagtgcaacaattaatacactgcatagataatcaaattttgttga |
39873186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 268
Target Start/End: Complemental strand, 39882067 - 39881973
Alignment:
| Q |
174 |
ttcaagatgtatttattattttctagcattttaaatgttctctctcaataagtacctcggtagattgctaaggctttagagattttaacatgtaa |
268 |
Q |
| |
|
||||||||||||||| || ||| ||||||| || |||| ||||| ||| || | | ||||||||||||| ||||| ||||||||||||||||| |
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|
| T |
39882067 |
ttcaagatgtatttagtactttgtagcattaaaattgttttctctgaattaggtcattggtagattgctaaagctttcgagattttaacatgtaa |
39881973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 263
Target Start/End: Original strand, 40097629 - 40097695
Alignment:
| Q |
197 |
tagcattttaaatgttctctctcaataagtacctcggtagattgctaaggctttagagattttaaca |
263 |
Q |
| |
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|||||||||||||||| ||| | ||| || ||| ||||||||||||| |||||||||||||||||| |
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|
| T |
40097629 |
tagcattttaaatgttttctttgaattagatccttggtagattgctaaagctttagagattttaaca |
40097695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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