View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4810-Insertion-6 (Length: 453)
Name: NF4810-Insertion-6
Description: NF4810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4810-Insertion-6 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 5 - 261
Target Start/End: Original strand, 7522337 - 7522592
Alignment:
| Q |
5 |
acacattttaacattagatatgctagcaacacacaatttcctttagatcaatgtgtatcaattatcatatcttaaatgcatatgtgattcttcttctctt |
104 |
Q |
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| T |
7522337 |
acacattttaatattagatatgctagcaacacacaatttcctttaggtcaatgtgtatcaattgtcatatcttaaatgcatatgtgattcttcttctcat |
7522436 |
T |
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| Q |
105 |
gttacatttcatcatatggatatt-cattgttgctcaatttccttcaagataatccagatgctcccattccttctccatggaaacaaatatacgatgttg |
203 |
Q |
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| T |
7522437 |
gttacatttcatcatatggatattcctttgttgctcaatttccttcaagataatccagatgctcccatttcttctccatggaaacaaatatacgatgttg |
7522536 |
T |
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| Q |
204 |
aggtatatatctctctcatatattacagttgtgaaaacaaaaactcacatatctcata |
261 |
Q |
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| T |
7522537 |
agg--tatatctctctcatatattagatttgtgaaaacaaaaactcacatatctcata |
7522592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 7523498 - 7523275
Alignment:
| Q |
17 |
attagatatgctagcaacacacaatttccttt-agatcaatgtgtatcaattatcatatcttaaatgcatatgtgattcttcttctcttgttacatttca |
115 |
Q |
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| T |
7523498 |
attagatatgctagcaacacacaatttccttttatgtcaatttgtatcaattgtcatatcttaaatgcatacgtgatttttcttctattgttacatttca |
7523399 |
T |
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| Q |
116 |
tcatatggatattcatt-gttgctcaatttccttcaagataatccagatgctcccattccttctccatggaaacaaatatacgatgttgaggtatatatc |
214 |
Q |
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| T |
7523398 |
tc--atggatattctttggttgtttaatttccttcaagataacccatatgctctcattcct------tggagacagatatatgatgtttaagtata---- |
7523311 |
T |
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| Q |
215 |
tctctcatatattacagttgtgaaaacaaaaactca |
250 |
Q |
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| T |
7523310 |
tctctcatatatcagatttgtgaaaacaaaaactca |
7523275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 352 - 453
Target Start/End: Original strand, 7522683 - 7522784
Alignment:
| Q |
352 |
ccatatcatagacatggctaattttctacaagcacaatgagagtggatttttgatatatgatattaggtcgttggtcaatattcgagggggagttttatg |
451 |
Q |
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| T |
7522683 |
ccatatcatagacatggctaattttctacaagaacaatgagagtggattctctatatatgatattaggtcgttggtcaatattcaaaggggagttttatg |
7522782 |
T |
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| Q |
452 |
gg |
453 |
Q |
| |
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|| |
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| T |
7522783 |
gg |
7522784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 355 - 434
Target Start/End: Complemental strand, 7523179 - 7523100
Alignment:
| Q |
355 |
tatcatagacatggctaattttctacaagcacaatgagagtggatttttgatatatgatattaggtcgttggtcaatatt |
434 |
Q |
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| T |
7523179 |
tatcatagacatagttatttttctacaagcacagtgagaatgtattcttgatatatgattttaggccgccggtcaatatt |
7523100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 7559107 - 7559071
Alignment:
| Q |
83 |
catatgtgattcttcttctcttgttacatttcatcat |
119 |
Q |
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| T |
7559107 |
catatgtgattcttcttctcttgttgcatttcatcat |
7559071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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