View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4810-Insertion-7 (Length: 407)

Name: NF4810-Insertion-7
Description: NF4810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4810-Insertion-7
NF4810-Insertion-7
[»] chr3 (2 HSPs)
chr3 (8-407)||(37386008-37386410)
chr3 (17-78)||(40344921-40344982)
[»] chr4 (2 HSPs)
chr4 (13-82)||(30615210-30615279)
chr4 (19-67)||(2632485-2632533)
[»] chr1 (1 HSPs)
chr1 (13-74)||(28165118-28165179)
[»] chr7 (1 HSPs)
chr7 (16-71)||(20949169-20949224)
[»] chr2 (2 HSPs)
chr2 (15-82)||(19285976-19286043)
chr2 (16-71)||(38214210-38214265)
[»] chr8 (2 HSPs)
chr8 (17-71)||(2520129-2520183)
chr8 (13-70)||(40314309-40314366)
[»] chr6 (2 HSPs)
chr6 (50-82)||(5428833-5428865)
chr6 (50-82)||(24789919-24789951)


Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 8 - 407
Target Start/End: Complemental strand, 37386410 - 37386008
Alignment:
Q  8 attagagatgtatttaatgtttcacagttttttatagggacgtatttgtaaaaatatttaaaaaattgcaacaatatatat--gaatgttttctgttttc 105  Q
    ||||| |||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||     
T  37386410 attagggatgtatttaatatttcacagttttttatagagacgtatttataaaaatatttaaaaaattgcaacaatatatatatgaatgttttctgttttt 37386311  T
Q  106 cttcttaataaagataggagagagtattcacaaccgtttaacaatgattagtctatcaaagagttgttgagcatgaaaagtaaccataaa-tattttgtt 204  Q
    |||||||||||||| | ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  37386310 cttcttaataaagacatgagagagtatttataaccgtttaacaatgattagtctatcaaagagttgttgagcatgaaaagtaatcataaaatattttgtt 37386211  T
Q  205 gacacattttttctaaacctacaccttatactactgattttgtattaagtgtttctccaccttgaaatccgactaacactaaatatgagggtactatata 304  Q
    ||||||||||| ||||| ||||||| |||||||||| ||||||||||| ||||||||| ||| ||||||||||||| ||||||| |||||||||||||||    
T  37386210 gacacatttttcctaaatctacaccatatactactgtttttgtattaattgtttctccgcctcgaaatccgactaatactaaatctgagggtactatata 37386111  T
Q  305 aagtgttggaattgtgtgtccaaatatcattgttaggacaaattatttattctcaactatatatacaaaacacaagtcaaatttaaagagaaaatatatt 404  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37386110 aagtgttggatttgtgtgtccaaatataattgttaggacaaattatttattctcaactatatatgcaaaacacaagtcaaatttaaagagaaaatatatt 37386011  T
Q  405 tga 407  Q
    |||    
T  37386010 tga 37386008  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 40344982 - 40344921
Alignment:
Q  17 gtatttaatgtttcacagttttttatagggacgtatttgtaaaaatatttaaaaaattgcaa 78  Q
    |||||||||| |||||| ||||||||| ||   |||||||||||||||| ||||| ||||||    
T  40344982 gtatttaatggttcacaattttttataagggtatatttgtaaaaatattcaaaaagttgcaa 40344921  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 30615210 - 30615279
Alignment:
Q  13 agatgtatttaatgtttcacagttttttatagggacgtatttgtaaaaatatttaaaaaattgcaacaat 82  Q
    ||||||||||||||||||| | |||||||||  |  ||||||||||||||||||||||| || |||||||    
T  30615210 agatgtatttaatgtttcataattttttataaaggtgtatttgtaaaaatatttaaaaagttacaacaat 30615279  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 2632485 - 2632533
Alignment:
Q  19 atttaatgtttcacagttttttatagggacgtatttgtaaaaatattta 67  Q
    ||||||||||||||| ||||||||| | |  ||||||||||||||||||    
T  2632485 atttaatgtttcacaattttttataagaagatatttgtaaaaatattta 2632533  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 28165179 - 28165118
Alignment:
Q  13 agatgtatttaatgtttcacagttttttatagggacgtatttgtaaaaatatttaaaaaatt 74  Q
    ||||||||||||||||||||| ||||||||| ||   |||||||||||||||| ||||||||    
T  28165179 agatgtatttaatgtttcacaattttttataagggtatatttgtaaaaatattcaaaaaatt 28165118  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 20949169 - 20949224
Alignment:
Q  16 tgtatttaatgtttcacagttttttatagggacgtatttgtaaaaatatttaaaaa 71  Q
    |||||||||||||||||| ||||||||  ||   ||||||||||||||||||||||    
T  20949169 tgtatttaatgtttcacaattttttatgagggtatatttgtaaaaatatttaaaaa 20949224  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 19285976 - 19286043
Alignment:
Q  15 atgtatttaatgtttcacagttttttatagggacgtatttgtaaaaatatttaaaaaattgcaacaat 82  Q
    |||||||||||| ||||||  ||| ||||||||  ||||||||||| |||||||||| ||| ||||||    
T  19285976 atgtatttaatggttcacaactttctatagggatatatttgtaaaattatttaaaaagttgtaacaat 19286043  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 38214210 - 38214265
Alignment:
Q  16 tgtatttaatgtttcacagttttttatagggacgtatttgtaaaaatatttaaaaa 71  Q
    |||||||||||||||||| ||||||||  |||  |||||||||||||||| |||||    
T  38214210 tgtatttaatgtttcacaattttttatgaggatatatttgtaaaaatattcaaaaa 38214265  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 2520183 - 2520129
Alignment:
Q  17 gtatttaatgtttcacagttttttatagggacgtatttgtaaaaatatttaaaaa 71  Q
    ||||||||||||||||| ||||||||  |||  |||||||||||||||| |||||    
T  2520183 gtatttaatgtttcacaattttttatgaggatatatttgtaaaaatattcaaaaa 2520129  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 40314309 - 40314366
Alignment:
Q  13 agatgtatttaatgtttcacagttttttatagggacgtatttgtaaaaatatttaaaa 70  Q
    ||||||||||||||||||| | ||||||||   ||  |||||||||||||||||||||    
T  40314309 agatgtatttaatgtttcataattttttatgaagatatatttgtaaaaatatttaaaa 40314366  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 82
Target Start/End: Original strand, 5428833 - 5428865
Alignment:
Q  50 tatttgtaaaaatatttaaaaaattgcaacaat 82  Q
    ||||||||||||||||||||||||| |||||||    
T  5428833 tatttgtaaaaatatttaaaaaattacaacaat 5428865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 82
Target Start/End: Complemental strand, 24789951 - 24789919
Alignment:
Q  50 tatttgtaaaaatatttaaaaaattgcaacaat 82  Q
    ||||||||||||||||||||||||| |||||||    
T  24789951 tatttgtaaaaatatttaaaaaattacaacaat 24789919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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