View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4810_high_3 (Length: 320)
Name: NF4810_high_3
Description: NF4810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4810_high_3 |
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| [»] chr6 (2 HSPs) |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 33 - 320
Target Start/End: Original strand, 5297502 - 5297789
Alignment:
| Q |
33 |
atgaagctgatcagcttcatgatgatgatgacaaatctcataagtctcgcaaaaagataataataaaacttattttcatcatttgtattaactataataa |
132 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5297502 |
atgaagctgatcagcttcatgatgatgatgacaaatctcataagtctcgcaaaaagataataataaaacttattttcatcatttgtattaactataataa |
5297601 |
T |
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| Q |
133 |
gttatgtggcatcgataaaagctactgttctcagtacaataatttgtgtagaaatatacataccgaatccattgtggctaagagcggtaaccctaacgct |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5297602 |
gttatgtggcatcgataaaagctactgttctcagtacaataatttgtgtagaaatatacataccgaatccattgtggctaagagcggtaaccctaacgct |
5297701 |
T |
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| Q |
233 |
gaaatccttccttgatcagagattgcggccatggtttgtgtgttatttttatctatctatatatgtatcaaataaatgtgtgtatgtg |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5297702 |
gaaatccttccttgatcagagattgcggccatggtttgtgtgttatttttatctatctatatatgtatcaaataaatgtgtgtatgtg |
5297789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 52
Target Start/End: Complemental strand, 5297531 - 5297502
Alignment:
| Q |
23 |
catcatcatcatgaagctgatcagcttcat |
52 |
Q |
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| T |
5297531 |
catcatcatcatgaagctgatcagcttcat |
5297502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 33 - 320
Target Start/End: Original strand, 54721349 - 54721636
Alignment:
| Q |
33 |
atgaagctgatcagcttcatgatgatgatgacaaatctcataagtctcgcaaaaagataataataaaacttattttcatcatttgtattaactataataa |
132 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54721349 |
atgaagctgatcagcttcatgatgatgatgacaaatctcataagtctcgcaaaaagataataataaaacttattttcatcatttgtattaactataataa |
54721448 |
T |
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| Q |
133 |
gttatgtggcatcgataaaagctactgttctcagtacaataatttgtgtagaaatatacataccgaatccattgtggctaagagcggtaaccctaacgct |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54721449 |
gttatgtggcatcgataaaagctactgttctcagtacaataatttgtgtagaaatatacataccgaatccattgtggctaagagcggtaaccctaacgct |
54721548 |
T |
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| Q |
233 |
gaaatccttccttgatcagagattgcggccatggtttgtgtgttatttttatctatctatatatgtatcaaataaatgtgtgtatgtg |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54721549 |
gaaatccttccttgatcagagattgcggccatggtttgtgtgttatttttatctatctatatatgtatcaaataaatgtgtgtatgtg |
54721636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 200 - 292
Target Start/End: Original strand, 54714572 - 54714664
Alignment:
| Q |
200 |
tccattgtggctaagagcggtaaccctaacgctgaaatccttccttgatcagagattgcggccatggtttgtgtgttatttttatctatctat |
292 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
54714572 |
tccattgtggctaaaagcggtaaccctaacgctgaaatccttccatgatcagagattgcggccatggtttgtgtgttatttatatctatctat |
54714664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 52
Target Start/End: Complemental strand, 54721378 - 54721349
Alignment:
| Q |
23 |
catcatcatcatgaagctgatcagcttcat |
52 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
54721378 |
catcatcatcatgaagctgatcagcttcat |
54721349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 279
Target Start/End: Original strand, 5398845 - 5398892
Alignment:
| Q |
232 |
tgaaatccttccttgatcagagattgcggccatggtttgtgtgttatt |
279 |
Q |
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|||||||||||| |||| |||||||| ||||||||||||||||||||| |
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| T |
5398845 |
tgaaatccttccatgatgagagattgtggccatggtttgtgtgttatt |
5398892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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