View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4810_low_1 (Length: 223)
Name: NF4810_low_1
Description: NF4810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4810_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 7100312 - 7100519
Alignment:
| Q |
1 |
aaaagtgaaacaaataataaggcaaccaaaacctatatatatgtagagcaatccaaagacaatgataaatagagtaaaacaaaacttacaaaaattgtga |
100 |
Q |
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| T |
7100312 |
aaaagtgaaacaaataataaggcaaccaaaacctatatacatgtagagcaatccagagacaatgataaatagagtaaaacaaaacttacaaaaattgtga |
7100411 |
T |
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| Q |
101 |
tgaatgaaagcctgagatatctgcagatttcttcaaagcagatctccactgtttcaccctaattgaattgtactttttgtcatgttcgacaaattcatct |
200 |
Q |
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| T |
7100412 |
tgaatgaaaaccagagatatctgcagatttcttcaaagcagatctccactgtttcaccctacttgaattgtactttttgtcatgttcaacaaattcattt |
7100511 |
T |
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| Q |
201 |
gcataagt |
208 |
Q |
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|||||||| |
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| T |
7100512 |
gcataagt |
7100519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 81 - 208
Target Start/End: Original strand, 7086780 - 7086907
Alignment:
| Q |
81 |
aaaacttacaaaaattgtgatgaatgaaagcctgagatatctgcagatttcttcaaagcagatctccactgtttcaccctaattgaattgtactttttgt |
180 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| | | |||||||||||| | |
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| T |
7086780 |
aaaacttacaaaaattgtgatgaatgaaaccctgagatatctgcagatttcttcaaagagcttctccactgtttcaccttgttcaaattgtacttttgtt |
7086879 |
T |
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| Q |
181 |
catgttcgacaaattcatctgcataagt |
208 |
Q |
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| T |
7086880 |
catgttctgcaaatgcatttgcataagt |
7086907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 74 - 149
Target Start/End: Original strand, 7078231 - 7078306
Alignment:
| Q |
74 |
gtaaaacaaaacttacaaaaattgtgatgaatgaaagcctgagatatctgcagatttcttcaaagcagatctccac |
149 |
Q |
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|||||| || |||||| ||||||||||||||| ||| || || |||| |||||||| ||||||||||||||||||| |
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| T |
7078231 |
gtaaaagaacacttacgaaaattgtgatgaatcaaatccagaaatatttgcagattgcttcaaagcagatctccac |
7078306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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