View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4811-Insertion-1 (Length: 1039)

Name: NF4811-Insertion-1
Description: NF4811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4811-Insertion-1
NF4811-Insertion-1
[»] chr7 (8 HSPs)
chr7 (317-1029)||(19929228-19929940)
chr7 (387-1012)||(19935523-19936145)
chr7 (387-1012)||(19966662-19967284)
chr7 (6-290)||(19929943-19930227)
chr7 (387-1006)||(47604958-47605575)
chr7 (587-1003)||(19973427-19973840)
chr7 (835-899)||(17167285-17167349)
chr7 (842-908)||(11378444-11378510)
[»] chr5 (2 HSPs)
chr5 (830-900)||(4287991-4288061)
chr5 (862-907)||(2006639-2006684)
[»] chr3 (6 HSPs)
chr3 (803-904)||(27814985-27815086)
chr3 (835-906)||(39559641-39559712)
chr3 (862-908)||(49856604-49856650)
chr3 (862-907)||(49973059-49973104)
chr3 (862-896)||(14349729-14349763)
chr3 (850-908)||(49867978-49868036)
[»] chr2 (1 HSPs)
chr2 (860-903)||(6688403-6688446)
[»] chr1 (1 HSPs)
chr1 (862-896)||(43099309-43099343)
[»] scaffold0543 (1 HSPs)
scaffold0543 (867-908)||(2126-2167)
[»] scaffold0492 (1 HSPs)
scaffold0492 (867-908)||(3672-3713)
[»] chr8 (1 HSPs)
chr8 (863-904)||(5386767-5386808)


Alignment Details
Target: chr7 (Bit Score: 662; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 662; E-Value: 0
Query Start/End: Original strand, 317 - 1029
Target Start/End: Complemental strand, 19929940 - 19929228
Alignment:
Q  317 gctaccaagatgagaatgatattatacttgtttatcacacttacgagtggagcacaaactaatatcacactctgttttcaaataaaagcaggttgtcgtt 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19929940 gctaccaagatgagaatgatattatacttgtttatcacacttacgagtggagcacaaactaatatcacactctgttttcaaataaaagcaggttgtcgtt 19929841  T
Q  417 ctacaacactagtcaatgcagttgcaaattttgatatccattactctttcccacaagtccacaacaagactaccaaaaaatgacagacatcgatataacc 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19929840 ctacaacactagtcaatgcagttgcaaattttgatatccattactctttcccacaagtccacaacaagactaccaaaaaatgacagacatcgatataacc 19929741  T
Q  517 caagtaaaaaagaaccatcaataagaaaataaatgaaaaagttgagagggtctagtatcaattaattacgtgaaagtcaatacatatttgaaaatttaaa 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19929740 caagtaaaaaagaaccatcaataagaaaataaatgaaaaagttgagaggatctagtatcaattaattacgtgaaagtcaatacatatttgaaaatttaaa 19929641  T
Q  617 tgttaaagaggtcaaaatgaaacagaggtcatgcctttgaaagcatcagatcttaccattgcatacgaagaatctaatttaaaaagtagacataagaact 716  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19929640 tgttatagaggtcaaaatgaaacagaggtcatgcctttgaaagcatcagatcttaccattgcatacgaagaatctaatttaaaaagtagacataagaact 19929541  T
Q  717 attgtaaactatgacataactttcatcaatcaaataagattttacatgttgatgaggcccttgagcacgaagctagtttcttcaaaatttggtgcttggc 816  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19929540 attgtaaactatgacataactttcatcaatcaaataagagtttacatgttgatgaggcccttgtgcacgaagctagtttcttcaaaatttggtgcttggc 19929441  T
Q  817 atttgtatctacggaagaggcactcttgattgacatggtcttcaatacttttgaattctgcataatatattttgcaaattgaagctcacaatctgtgtat 916  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19929440 atttgtatctacggaagaggtactcttgattgacatggtcttcaatacttttgaattctgcataatatattttgcaaattgaagctcacaatctgtgtat 19929341  T
Q  917 ttataaccttttaagcaagcatgtcttgagttgtgttgaaaggcattttggaataatcgttggatccacccaattatccccaacttcctc-aaattctca 1015  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||   |||||||    
T  19929340 ttataacc-tttaagcaagcatgtcttgagttgtgttgaaaggcattttggaatagtcgttggatccacccaattatccacaacttcctcttcattctca 19929242  T
Q  1016 acatcctatcaaca 1029  Q
    ||||||||||||||    
T  19929241 acatcctatcaaca 19929228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 387 - 1012
Target Start/End: Complemental strand, 19936145 - 19935523
Alignment:
Q  387 tctgttttcaaataaaagcaggttgtcgttctacaacactagtcaatgcagttgcaaattttgatatccattactctttcccacaagtccacaacaagac 486  Q
    ||||||||||| |||||||| |||| | |||||| |||| |||| ||| ||||| ||| ||||| ||||||||||  |||||||||||||||||||||||    
T  19936145 tctgttttcaattaaaagcacgttggcattctactacaccagtctatgtagttggaaaatttgacatccattacttcttcccacaagtccacaacaagac 19936046  T
Q  487 taccaaaaaatgacagacatcgatataacccaagtaaaaaag-aaccatcaataagaaaataaatgaaaaagttgagagggtctagtatcaattaattac 585  Q
    ||||||| ||| |||||||| ||||||||||||||||||||  || ||||| ||||||||     ||||||||||||||| ||||| |||||||| ||||    
T  19936045 taccaaataattacagacattgatataacccaagtaaaaaaacaatcatcagtaagaaaa-----gaaaaagttgagaggatctagcatcaattagttac 19935951  T
Q  586 gtgaaagtcaatacatatttgaaaatttaaatgtta-aagaggtcaaaatgaaacagaggtcatgcctttgaaagcatcagatcttaccattgcatacga 684  Q
    ||||||||||||||||||||||||||| |||||  | ||||||||||| ||||||||||| ||||||||||||| |||||||| ||||||||| |||| |    
T  19935950 gtgaaagtcaatacatatttgaaaattgaaatgacataagaggtcaaattgaaacagaggccatgcctttgaaaccatcagatgttaccattgaatacaa 19935851  T
Q  685 agaatctaatttaaaaagtagacata--agaactattgtaaactatgacataactttcatcaatcaaataagattttacatgttgatgaggcccttgagc 782  Q
    ||| |||||| |||||||||||||||  |||||||| | || ||||||| |||||||||||||||||| |||| |||||||||||||||||||||||  |    
T  19935850 agattctaatataaaaagtagacatataagaactatagcaa-ctatgacctaactttcatcaatcaaacaagagtttacatgttgatgaggcccttgtac 19935752  T
Q  783 acgaagctagtttcttcaaaatttggtgcttggcatttgtatctacggaagaggcactcttgattgacatggtcttcaatacttttgaattctgcataat 882  Q
    ||||||| |||||| || ||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  19935751 acgaagcaagtttcatccaaatttggtgcttggtatttgtatctatggaagaggcgctcttgattgacatggtcttcaatacttctgaattctgcataat 19935652  T
Q  883 atattttgcaaattgaagctcacaatctgtgtatttataaccttttaagcaagcatgtcttgagttgtgttgaaaggcattttggaataatcgttggatc 982  Q
    ||||||||||||||||||||||| ||||||| ||| ||| || ||||||||||||||| |||||||||||||||||||| | ||||||||| |||||||     
T  19935651 atattttgcaaattgaagctcacgatctgtgcattcatagcc-tttaagcaagcatgttttgagttgtgttgaaaggcaatctggaataattgttggata 19935553  T
Q  983 cacccaattatccccaacttcctcaaattc 1012  Q
    ||||||||||||| ||||||||||||||||    
T  19935552 cacccaattatccacaacttcctcaaattc 19935523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 387 - 1012
Target Start/End: Complemental strand, 19967284 - 19966662
Alignment:
Q  387 tctgttttcaaataaaagcaggttgtcgttctacaacactagtcaatgcagttgcaaattttgatatccattactctttcccacaagtccacaacaagac 486  Q
    ||||||||||| |||||||| |||| | |||||| |||| |||| ||| ||||| ||| ||||| ||||||||||  |||||||||||||||||||||||    
T  19967284 tctgttttcaattaaaagcacgttggcattctactacaccagtctatgtagttggaaaatttgacatccattacttcttcccacaagtccacaacaagac 19967185  T
Q  487 taccaaaaaatgacagacatcgatataacccaagtaaaaaag-aaccatcaataagaaaataaatgaaaaagttgagagggtctagtatcaattaattac 585  Q
    ||||||| ||| |||||||| ||||||||||||||||||||  || ||||| ||||||||     ||||||||||||||| ||||| |||||||| ||||    
T  19967184 taccaaataattacagacattgatataacccaagtaaaaaaacaatcatcagtaagaaaa-----gaaaaagttgagaggatctagcatcaattagttac 19967090  T
Q  586 gtgaaagtcaatacatatttgaaaatttaaatgtta-aagaggtcaaaatgaaacagaggtcatgcctttgaaagcatcagatcttaccattgcatacga 684  Q
    ||||||||||||||||||||||||||| |||||  | ||||||||||| ||||||||||| ||||||||||||| |||||||| ||||||||| |||| |    
T  19967089 gtgaaagtcaatacatatttgaaaattgaaatgacataagaggtcaaattgaaacagaggccatgcctttgaaaccatcagatgttaccattgaatacaa 19966990  T
Q  685 agaatctaatttaaaaagtagacata--agaactattgtaaactatgacataactttcatcaatcaaataagattttacatgttgatgaggcccttgagc 782  Q
    ||| |||||| |||||||||||||||  |||||||| | || ||||||| |||||||||||||||||| |||| |||||||||||||||||||||||  |    
T  19966989 agattctaatataaaaagtagacatataagaactatagcaa-ctatgacctaactttcatcaatcaaacaagagtttacatgttgatgaggcccttgtac 19966891  T
Q  783 acgaagctagtttcttcaaaatttggtgcttggcatttgtatctacggaagaggcactcttgattgacatggtcttcaatacttttgaattctgcataat 882  Q
    ||||||| |||||| || ||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  19966890 acgaagcaagtttcatccaaatttggtgcttggtatttgtatctatggaagaggcgctcttgattgacatggtcttcaatacttctgaattctgcataat 19966791  T
Q  883 atattttgcaaattgaagctcacaatctgtgtatttataaccttttaagcaagcatgtcttgagttgtgttgaaaggcattttggaataatcgttggatc 982  Q
    ||||||||||||||||||||||| ||||||| ||| ||| || ||||||||||||||| |||||||||||||||||||| | ||||||||| |||||||     
T  19966790 atattttgcaaattgaagctcacgatctgtgcattcatagcc-tttaagcaagcatgttttgagttgtgttgaaaggcaatctggaataattgttggata 19966692  T
Q  983 cacccaattatccccaacttcctcaaattc 1012  Q
    ||||||||||||| ||||||||||||||||    
T  19966691 cacccaattatccacaacttcctcaaattc 19966662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 6 - 290
Target Start/End: Complemental strand, 19930227 - 19929943
Alignment:
Q  6 cagaaaaaataccaaaccagcattcaattactaagctgaattacacctagaataaatcaaacgaaaattcaataaatgaaggttatatatcataagagta 105  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||    
T  19930227 cagaaaaaataccaaaccagcattcaattactaagttgaattacacctagaattaatcaaacaaaaactcaataaatgaaggttatatatcataagagta 19930128  T
Q  106 aaatatctaagcaaggattagttcatgtctcttcatctcaatttgctcttcctgaatagtgttaataaaagagcttagcaacctaaatggttttattgtt 205  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  19930127 aaatatcttagcaaagattagttcatgtctcttcatctcaatttgcttttcttgaatagtgttaataaaagagcttagcaacctaaatggttatattgtt 19930028  T
Q  206 acctgatattcaaattaatggaaaagaaaccaatcagaattgttgtaccatttagtcaagcaagtggatgtcataatttagaaac 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19930027 acctgatattcaaattaatggaaaagaaaccaatcagaattgttgtaccatttagtcaagcaagtggatgtcataatttagaaac 19929943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 387 - 1006
Target Start/End: Original strand, 47604958 - 47605575
Alignment:
Q  387 tctgttttcaaataaaagcaggttgtcgttctacaacactagtcaatgcagttgcaaattttgatatccattactctttcccacaagtccacaacaagac 486  Q
    ||||||||||| |||||||| | ||  ||||||| |   ||||| ||| ||||||||||||||||||||||||||| |||||||||||| |||||| |||    
T  47604958 tctgttttcaattaaaagcatgctggagttctactattttagtctatgtagttgcaaattttgatatccattactccttcccacaagtctacaacaggac 47605057  T
Q  487 tacc-aaaaaatgacagacatcgatataacccaagtaaaaaagaaccatcaataagaaaataaatgaaaaagttgagagggtctagtatcaattaattac 585  Q
    |||| |||||||||||||||| ||||||| |||||||||||| || |||||||||||||  |||||||||||||||||||||   | || ||||||| |     
T  47605058 taccaaaaaaatgacagacatggatataatccaagtaaaaaa-aatcatcaataagaaaggaaatgaaaaagttgagagggttctgcatgaattaataaa 47605156  T
Q  586 gtgaaagtcaatacatatttgaaaatttaaatgttaaagaggtcaaaatgaaacagaggtcatgcctttgaaagcatcagatcttaccattgcatacgaa 685  Q
    ||||||||||||  ||| |||||||| ||||||  | ||||||||||| |||| |||||  ||||||||||||  |  || |||||| |||||||| |||    
T  47605157 gtgaaagtcaatgtatagttgaaaatctaaatgacatagaggtcaaaacgaaagagaggctatgcctttgaaactaaaag-tcttacaattgcatatgaa 47605255  T
Q  686 gaatctaatttaaaaagtagac--ataagaactattgtaaactatgacataactttcatcaatcaaataagattttacatgttgatgaggcccttgagca 783  Q
    |||||||||  |||||||||||  |||||||||||||  ||||||| | ||||||||||| || |||| ||| |||||||||||||||||||||||  ||    
T  47605256 gaatctaatagaaaaagtagacatataagaactattg-caactatgccctaactttcatccat-aaattagagtttacatgttgatgaggcccttgtcca 47605353  T
Q  784 cgaagctagtttcttcaaaatttggtgcttggcatttgtatctacggaagaggcactcttgattgacatggtcttcaatacttttgaattctgcataata 883  Q
     || |||  |||| |  | | ||||| |||| ||||| ||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  47605354 tgaggctgatttccttgacaattggtacttgacatttatatctacagaagaggcaatcttgattgacatggtgttcaatacttttgaattctgcataata 47605453  T
Q  884 tattttgcaaattgaagctcacaatctgtgtatttataaccttttaagcaagcatgtcttgagttgtgttgaaaggcattttggaataatcgttggatcc 983  Q
    ||||| ||||||||||| ||||| || ||| ||||| |||| |||||||||||||||  | || ||||||||||| ||||  ||| |||| | |||||||    
T  47605454 tatttggcaaattgaagttcacattccgtgcatttaaaacc-tttaagcaagcatgttctcagctgtgttgaaagacattccggagtaattgctggatcc 47605552  T
Q  984 acccaattatccccaacttcctc 1006  Q
    | |||||||||  ||||||||||    
T  47605553 atccaattatcaacaacttcctc 47605575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 587 - 1003
Target Start/End: Original strand, 19973427 - 19973840
Alignment:
Q  587 tgaaagtcaatacatatttgaaaatttaaatgttaaagaggtcaaaatgaaacagaggtcatgcctttgaaagc-atcagatcttaccattgcatacga- 684  Q
    |||||| |||||||||||||||||| ||||||  | |||| |||||||||||||||  |||||||||||||| | || | |||||| ||||||||| |      
T  19973427 tgaaagccaatacatatttgaaaatctaaatg--acagag-tcaaaatgaaacagatctcatgcctttgaaaaccattaaatcttagcattgcatatgtt 19973523  T
Q  685 agaatctaatttaaaaagtagacataagaactattgtaaactatgacataactttcatcaatcaaataagattttacatgttgatgaggcccttgagcac 784  Q
    ||||||||||  |||||| | |||||||||||| || |  | ||| | || || ||||||||||||||||| ||||||||||| |||||||||||   |     
T  19973524 agaatctaatacaaaaagcacacataagaactaatgcag-cgatgccctagctgtcatcaatcaaataagagtttacatgttgttgaggcccttgtcgat 19973622  T
Q  785 gaagctagtttcttcaaaatttggtgcttggcatttgtatctacggaagaggcactcttgattgacatggtcttcaatacttttgaattctgcataatat 884  Q
    ||||| | |||  |    ||||||||||||| ||||||||||| | |||| |||||||| |||| |||||| ||||||||||| | ||||||||||||||    
T  19973623 gaagcaaattttgttttcatttggtgcttggtatttgtatctatgtaagatgcactcttaattgtcatggtgttcaatactttcgcattctgcataatat 19973722  T
Q  885 attttgcaaattgaagctcacaatctgtgtatttataaccttttaagcaagcatgtcttgagttgtgttgaaaggcattttggaataatcgttggatcca 984  Q
    | | ||||||||||| |||||| |   ||   ||| |||| |||||||| ||| ||  ||||||||||||||||||||| ||||  ||  ||||||||||    
T  19973723 agtatgcaaattgaacctcacatttcatgctgttacaacc-tttaagcatgcacgttctgagttgtgttgaaaggcattctggagcaactgttggatcca 19973821  T
Q  985 cccaattatccccaacttc 1003  Q
     ||||||||||||||||||    
T  19973822 tccaattatccccaacttc 19973840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 835 - 899
Target Start/End: Original strand, 17167285 - 17167349
Alignment:
Q  835 ggcactcttgattgacatggtcttcaatacttttgaattctgcataatatattttgcaaattgaa 899  Q
    ||||||||| ||||| ||||| || | |||||| | ||||||||||||||||||| |||||||||    
T  17167285 ggcactcttaattgaaatggtgtttagtactttcgcattctgcataatatattttacaaattgaa 17167349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 842 - 908
Target Start/End: Complemental strand, 11378510 - 11378444
Alignment:
Q  842 ttgattgacatggtcttcaatacttttgaattctgcataatatattttgcaaattgaagctcacaat 908  Q
    ||||||| ||| |||| ||||||||||| ||||| || ||||||||||||||| ||||  |||||||    
T  11378510 ttgattgtcattgtctgcaatacttttgcattcttcaaaatatattttgcaaactgaaagtcacaat 11378444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 830 - 900
Target Start/End: Original strand, 4287991 - 4288061
Alignment:
Q  830 gaagaggcactcttgattgacatggtcttcaatacttttgaattctgcataatatattttgcaaattgaag 900  Q
    ||||||| |||||| |||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  4287991 gaagaggtactcttaattgtcatggtattcaacacttttgaattctgcataatatattttgcaaattgaag 4288061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 862 - 907
Target Start/End: Complemental strand, 2006684 - 2006639
Alignment:
Q  862 tacttttgaattctgcataatatattttgcaaattgaagctcacaa 907  Q
    |||||||||||| ||||| |||||||| |||||||||| |||||||    
T  2006684 tacttttgaattttgcatgatatatttagcaaattgaacctcacaa 2006639  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 803 - 904
Target Start/End: Original strand, 27814985 - 27815086
Alignment:
Q  803 atttggtgcttggcatttgtatctacggaagaggcactcttgattgacatggtcttcaatacttttgaattctgcataatatattttgcaaattgaagct 902  Q
    ||||||||||| |||||| |||| ||  |  ||| ||| || |||| ||| |||| || ||||||||||||||||||||||||| |||||||| ||||||    
T  27814985 atttggtgctttgcatttatatccactaagcaggaacttttaattgtcatcgtctgcagtacttttgaattctgcataatatatgttgcaaatcgaagct 27815084  T
Q  903 ca 904  Q
    ||    
T  27815085 ca 27815086  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 835 - 906
Target Start/End: Complemental strand, 39559712 - 39559641
Alignment:
Q  835 ggcactcttgattgacatggtcttcaatacttttgaattctgcataatatattttgcaaattgaagctcaca 906  Q
    ||||||||  |||| ||||||| | |||||| ||||||||||||| |||||||| |||||||||| ||||||    
T  39559712 ggcactctgaattgtcatggtccttaatactcttgaattctgcattatatatttagcaaattgaaactcaca 39559641  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 862 - 908
Target Start/End: Original strand, 49856604 - 49856650
Alignment:
Q  862 tacttttgaattctgcataatatattttgcaaattgaagctcacaat 908  Q
    |||| ||||||||||||| ||||||||||||||||||||||| ||||    
T  49856604 tactcttgaattctgcatgatatattttgcaaattgaagctcgcaat 49856650  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 862 - 907
Target Start/End: Original strand, 49973059 - 49973104
Alignment:
Q  862 tacttttgaattctgcataatatattttgcaaattgaagctcacaa 907  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||||    
T  49973059 tactcttgaattcttcataatatattttgcaaagtgaagctcacaa 49973104  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 862 - 896
Target Start/End: Original strand, 14349729 - 14349763
Alignment:
Q  862 tacttttgaattctgcataatatattttgcaaatt 896  Q
    ||||||||||| |||||||||||||||||||||||    
T  14349729 tacttttgaatgctgcataatatattttgcaaatt 14349763  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 850 - 908
Target Start/End: Original strand, 49867978 - 49868036
Alignment:
Q  850 catggtcttcaatacttttgaattctgcataatatattttgcaaattgaagctcacaat 908  Q
    ||||||| ||| ||||  |||||||||||| ||||||||||||||| ||| ||||||||    
T  49867978 catggtcctcagtactcctgaattctgcattatatattttgcaaatggaaactcacaat 49868036  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 860 - 903
Target Start/End: Complemental strand, 6688446 - 6688403
Alignment:
Q  860 aatacttttgaattctgcataatatattttgcaaattgaagctc 903  Q
    |||||||||||||| ||||||| ||||| |||||||||||||||    
T  6688446 aatacttttgaattgtgcataacatattctgcaaattgaagctc 6688403  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 862 - 896
Target Start/End: Complemental strand, 43099343 - 43099309
Alignment:
Q  862 tacttttgaattctgcataatatattttgcaaatt 896  Q
    ||||||||||| |||||||||||||||||||||||    
T  43099343 tacttttgaatgctgcataatatattttgcaaatt 43099309  T

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Target: scaffold0543 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 867 - 908
Target Start/End: Original strand, 2126 - 2167
Alignment:
Q  867 ttgaattctgcataatatattttgcaaattgaagctcacaat 908  Q
    ||||||||||||| |||||| |||||||| ||||||||||||    
T  2126 ttgaattctgcatgatatatcttgcaaatggaagctcacaat 2167  T

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Target: scaffold0492 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 867 - 908
Target Start/End: Original strand, 3672 - 3713
Alignment:
Q  867 ttgaattctgcataatatattttgcaaattgaagctcacaat 908  Q
    ||||||||||||| |||||| |||||||| ||||||||||||    
T  3672 ttgaattctgcatgatatatcttgcaaatggaagctcacaat 3713  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 863 - 904
Target Start/End: Original strand, 5386767 - 5386808
Alignment:
Q  863 acttttgaattctgcataatatattttgcaaattgaagctca 904  Q
    ||||||||||| ||||||||||||||||| ||||||| ||||    
T  5386767 acttttgaattttgcataatatattttgcgaattgaaactca 5386808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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