View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4811-Insertion-11 (Length: 541)
Name: NF4811-Insertion-11
Description: NF4811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4811-Insertion-11 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 98 - 541
Target Start/End: Original strand, 42730912 - 42731351
Alignment:
| Q |
98 |
atattgcatctttcattgattctaagtcaattctgactaatagttaaattacatcttcaacttttgactatttcttttctatgtaaaaagttagacaatc |
197 |
Q |
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| T |
42730912 |
atattgcatctttcattgattctgagtcaattctgactaatagttaaattacatcttcaacttttgactatttcttttctatgtaaaaagttagacaatc |
42731011 |
T |
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| Q |
198 |
atgtattgtactgttgagttcagtgcatcaatacaataagatggaacagtttacattttgtcagattaagatgatttttctgatacagattactattagt |
297 |
Q |
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| T |
42731012 |
atgtattgtactgttgaattcagtgcatcaataaaataagatggaacagtttacattttgtcagattaagatgatttttctgatacagattactattagt |
42731111 |
T |
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| Q |
298 |
ttatgacttttattttattaactaagcaagcaaatcatttctgttgcatttcttagtattaaatagttactgcataaaaatttacttactgtgtcagatg |
397 |
Q |
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| T |
42731112 |
ttatgacttttattttattaactaagcac----atcatttctgttgcatttcttagtattaaatagttactgcataaaaatttacttactgtgtcagatg |
42731207 |
T |
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| Q |
398 |
tgtatgagtatgagttgttaagcaaaaaatactttacatttgtttctataaatagaactgttaatgatttgaatcatgataggaaagttgcaaataattt |
497 |
Q |
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| T |
42731208 |
tgtatgagtatgagttgttaagcaaaaaatactttacatttgtttctataaatagaactgttaatgatttgaatcatgataggaaagttgcaaataattt |
42731307 |
T |
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| Q |
498 |
caactgttagtaagtcttatcatgctgacaattgttcctactag |
541 |
Q |
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| T |
42731308 |
caactgttagtaagtcttatcatgctgacaattgttcctactag |
42731351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 42730791 - 42730885
Alignment:
| Q |
8 |
attagttggtttatgggaactatttcttctgttcatgttcaagatccaattcgttggcctgattctccttggcgccttcttcaggtaataatatt |
102 |
Q |
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| T |
42730791 |
attagttggtttatgggaactatttcttctgttcatgttcaagatccaattcgttggcctgattctccttggcgccttcttcaggtaataatatt |
42730885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 21716321 - 21716407
Alignment:
| Q |
8 |
attagttggtttatgggaactatttcttctgttcatgttcaagatccaattcgttggcctgattctccttggcgccttcttcaggta |
94 |
Q |
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| T |
21716321 |
attagttggtttatgggaacaatcgcttctgttcaggttgttgatcctattcgttggcctaactctccttggcgccttcttcaggta |
21716407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 40352116 - 40352030
Alignment:
| Q |
8 |
attagttggtttatgggaactatttcttctgttcatgttcaagatccaattcgttggcctgattctccttggcgccttcttcaggta |
94 |
Q |
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| T |
40352116 |
attagttggttcatgggaactatttcttctgttcaagttgttgatcctattcgttggcctaattccccttggagacttcttcaggta |
40352030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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