View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4811-Insertion-13 (Length: 516)
Name: NF4811-Insertion-13
Description: NF4811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4811-Insertion-13 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0651 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 462; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 7 - 516
Target Start/End: Original strand, 31333684 - 31334193
Alignment:
| Q |
7 |
acaaagaatgctaaattatccaagaactgcacatttcataacaataataagagacaaagctggtggacaagtaacaacagagggaagaatcagctacaaa |
106 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31333684 |
acaaagaatgctaaattatccaagaacagcacatttcataacaataataagagacaaagctggtggacaagtaacaacagagcgaagaatcagctacaaa |
31333783 |
T |
|
| Q |
107 |
ttgaattcaatcgacaaagagaatatgagagctggtatacaacaagcactaagaattttaatagcagcaggagcagttgaagtaggaacacacagaagtg |
206 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31333784 |
ttgaattcaatcgacaaagagaatatgagagccggtatacaacaagcactaagaattttaatagcagcaggagcagttgaagtaggaacacacagaagtg |
31333883 |
T |
|
| Q |
207 |
gtggtcagagaattaagtgtaatgagaacactggcgaaaaggaaattgaagagtttatagatagtgtttatccaatggaaggagcattgtcgccaggtga |
306 |
Q |
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||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31333884 |
gtggtcagagaattaagtgtaatgagaacaccagtgagaaggaaattgaagagtttatagatagtgtttatccaatggaaggagcattgtggccaggtga |
31333983 |
T |
|
| Q |
307 |
gaattggaatttgtatacttctgctcatcaaatgggaagttgcaaaatgggagtgaatgaaaaggaaggtgctgttgatgaaaatggtgagagttgggaa |
406 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31333984 |
gaattggaatttgtatacttctgctcatcaaatggggagttgtagaatgggagtgaatgaaaaggaaggtgctgttgatgaaaatggtgagagttgggaa |
31334083 |
T |
|
| Q |
407 |
gctgaagggttgtttgtttgtgatgctagtgttcttccaactgctgttggtgttaatcctatgattactattcaatcaactgcattttgtatttcaaata |
506 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
31334084 |
gctgaagggttgtttgtttgtgatgctagtgttcttccaactgctgttggtgttaatcctatgatcactattcaatcaactgcattttgtatttcaaata |
31334183 |
T |
|
| Q |
507 |
ggattgtaga |
516 |
Q |
| |
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|||||||||| |
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| T |
31334184 |
ggattgtaga |
31334193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 7 - 516
Target Start/End: Original strand, 31321431 - 31321940
Alignment:
| Q |
7 |
acaaagaatgctaaattatccaagaactgcacatttcataacaataataagagacaaagctggtggacaagtaacaacagagggaagaatcagctacaaa |
106 |
Q |
| |
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||||||||||||||| ||||||||||| ||||| || || |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
31321431 |
acaaagaatgctaaaatatccaagaacagcacacttaatcacaataataagagacaaagcaagtggacaagtaaaaacagagggaagaatcagctacaaa |
31321530 |
T |
|
| Q |
107 |
ttgaattcaatcgacaaagagaatatgagagctggtatacaacaagcactaagaattttaatagcagcaggagcagttgaagtaggaacacacagaagtg |
206 |
Q |
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||||||||||| |||| ||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31321531 |
ttgaattcaattgacagagagaatatgagagctggtttacaacaaggactaagaattctaatagcagcaggagcagttgaagtaggaacacacagaagtg |
31321630 |
T |
|
| Q |
207 |
gtggtcagagaattaagtgtaatgagaacactggcgaaaaggaaattgaagagtttatagatagtgtttatccaatggaaggagcattgtcgccaggtga |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31321631 |
atggtcagagaattaagtgtaatgagaacactggcgaaaaggaaattgaagagtttatagatagtgtttatccaatggaaggagcattgtggccaggtga |
31321730 |
T |
|
| Q |
307 |
gaattggaatttgtatacttctgctcatcaaatgggaagttgcaaaatgggagtgaatgaaaaggaaggtgctgttgatgaaaatggtgagagttgggaa |
406 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31321731 |
gaattggaatttgtatacttctgctcatcaaatggggagttgtagaatgggagtgaatgaaaaggaaggtgctgttgatgaaaatggtgagagttgggaa |
31321830 |
T |
|
| Q |
407 |
gctgaagggttgtttgtttgtgatgctagtgttcttccaactgctgttggtgttaatcctatgattactattcaatcaactgcattttgtatttcaaata |
506 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
31321831 |
gctgaagggttgtttgtttgtgatgctagtgttcttccaactgctgttggtgttaatcctatgatcactattcaatcaactgcattttgtatttcaaata |
31321930 |
T |
|
| Q |
507 |
ggattgtaga |
516 |
Q |
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|||||||||| |
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| T |
31321931 |
ggattgtaga |
31321940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 7 - 237
Target Start/End: Complemental strand, 2240 - 2010
Alignment:
| Q |
7 |
acaaagaatgctaaattatccaagaactgcacatttcataacaataataagagacaaagctggtggacaagtaacaacagagggaagaatcagctacaaa |
106 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2240 |
acaaagaatgctaaattatccaagaacagcacatttcataacaataataagagacaaagctggtggacaagtaacaacagagcgaagaatcagctacaaa |
2141 |
T |
|
| Q |
107 |
ttgaattcaatcgacaaagagaatatgagagctggtatacaacaagcactaagaattttaatagcagcaggagcagttgaagtaggaacacacagaagtg |
206 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2140 |
ttgaattcaatcgacaaagagaatatgagagccggtatacaacaagcactaagaattttaatagcagcaggagcagttgaagtaggaacacacagaagtg |
2041 |
T |
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| Q |
207 |
gtggtcagagaattaagtgtaatgagaacac |
237 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
2040 |
gtggtcagagaattaagtgtaatgagaacac |
2010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 325 - 483
Target Start/End: Original strand, 39110404 - 39110562
Alignment:
| Q |
325 |
ttctgctcatcaaatgggaagttgcaaaatgggagtgaatgaaaaggaaggtgctgttgatgaaaatggtgagagttgggaagctgaagggttgtttgtt |
424 |
Q |
| |
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|||||| ||||||||||||||||| | |||||| ||||||| | || ||||| |||||||| ||||| || ||||||||||| ||||||||| ||| |
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| T |
39110404 |
ttctgcacatcaaatgggaagttgtagaatgggtaagaatgaagaagagggtgcagttgatgagaatggagaaagttgggaagcaaaagggttgtatgtg |
39110503 |
T |
|
| Q |
425 |
tgtgatgctagtgttcttccaactgctgttggtgttaatcctatgattactattcaatc |
483 |
Q |
| |
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||||||| |||||| | || | ||| ||||||||||| |||||| | || |||||||| |
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| T |
39110504 |
tgtgatggaagtgttttgcctagtgcagttggtgttaaccctatggtaaccattcaatc |
39110562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 99 - 206
Target Start/End: Complemental strand, 22513672 - 22513564
Alignment:
| Q |
99 |
gctacaaattgaattcaatcgacaaag-agaatatgagagctggtatacaacaagcactaagaattttaatagcagcaggagcagttgaagtaggaacac |
197 |
Q |
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||||||||||||||||||| || | | | ||||||||||||||| ||||||||||| | || ||| | |||||||||||| |||||||||||| ||||| |
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| T |
22513672 |
gctacaaattgaattcaattgatagggaaaaatatgagagctggtttacaacaagcaatgaggattctgatagcagcaggaacagttgaagtagaaacac |
22513573 |
T |
|
| Q |
198 |
acagaagtg |
206 |
Q |
| |
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|||||||| |
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| T |
22513572 |
gcagaagtg |
22513564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 451 - 507
Target Start/End: Original strand, 10926283 - 10926339
Alignment:
| Q |
451 |
tgttggtgttaatcctatgattactattcaatcaactgcattttgtatttcaaatag |
507 |
Q |
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|||| ||||||||||| | || ||||||||||||||||||||||||||||||||||| |
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| T |
10926283 |
tgttagtgttaatcctctaataactattcaatcaactgcattttgtatttcaaatag |
10926339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 480
Target Start/End: Complemental strand, 33521232 - 33521062
Alignment:
| Q |
310 |
ttggaatttgtatacttctgctcatcaaatgggaagttgcaaaatgggagtgaatgaaaaggaaggtgctgttgatgaaaatggtgagagttgggaagct |
409 |
Q |
| |
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||||||| ||||| | |||||||| || ||||| ||||| | || ||| | | ||| |||||||| | |||||||||||||| ||| |||||||||| |
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| T |
33521232 |
ttggaatatgtatgcatctgctcaccagatggggagttgtaggataggaatcactgataaggaaggcacggttgatgaaaatggacagaattgggaagct |
33521133 |
T |
|
| Q |
410 |
gaagggttgtttgtttgtgatgctagtgttcttccaactgctgttggtgttaatcctatgattactattca |
480 |
Q |
| |
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||||| | ||||| |||||||| ||| | |||||||||| | ||| | ||||| ||||| |||||||| |
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| T |
33521132 |
gaaggactatttgtgtgtgatgcaagtttgtttccaactgccataggtatcaatcccatgataactattca |
33521062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 33521372 - 33521319
Alignment:
| Q |
167 |
atagcagcaggagcagttgaagtaggaacacacagaagtggtggtcagagaatt |
220 |
Q |
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|||||||| ||||||||||| ||||| || |||||||||| ||| ||||||||| |
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| T |
33521372 |
atagcagctggagcagttgaggtaggtactcacagaagtgatggacagagaatt |
33521319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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