View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4811-Insertion-14 (Length: 499)
Name: NF4811-Insertion-14
Description: NF4811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4811-Insertion-14 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 440; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 8 - 499
Target Start/End: Original strand, 47461736 - 47462224
Alignment:
| Q |
8 |
tatcacgcatatatgctatataaaaatgtcttcatcgactgctaagaaatgtgcaatatatttccaatagaaacaatttaatttgtattagtgaataacg |
107 |
Q |
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| T |
47461736 |
tatcacgcatatatgctatataaaaatgtcttcattgactgctaagaaatgtgcaatatatttgcaatagaaacaatttaatttgtattagtgaataacg |
47461835 |
T |
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| Q |
108 |
taactgaacaagtgtcggtgtttgtttgcaggtgcaagtttgagttttgctattcttgcggagcacaatggacatcttctcatggtggttgtcaaagaaa |
207 |
Q |
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| T |
47461836 |
taactgaacaagtgtcggtgtttgtttgcaggtgcaagtttgagttttgctattcttgcggagcacaatggacatcttctcatggtggttgtcaaagaaa |
47461935 |
T |
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| Q |
208 |
ttagatttaagaaaacatgatgattcatatagatgggttgtggttgtggttattttgatatggatattggatggttgtaaaagtttagaaagaagactat |
307 |
Q |
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| T |
47461936 |
ttagatttaagaaaagatgatgattcatatagatgggttgtggttgtggttattttgatatggatattggatggttgtaaaagtttagaaagaagactat |
47462035 |
T |
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| Q |
308 |
ataagcaagtctaggaaaactaagccggaaaattctcagcctttattatttaataattattttcaaaaagttattcctcatcttcttctgcattcttttg |
407 |
Q |
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| T |
47462036 |
ataagcaagtctaggaaaactaagccggaaaa-tctcagcctttattatttaataattattttcaaaaagttattcctcatcttcttctgcattc-tttg |
47462133 |
T |
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| Q |
408 |
gaaaagctctgatctcaaaaaatgaaggaaatatgattaaaacataggtgagtgttacacatgggaaagtcttgtgactttcctagcgtgga |
499 |
Q |
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| T |
47462134 |
gaaaacctctgatctcaaaaaatgaaggaaatatgattaaaacataggtgagattta-gcatgggaaagtcttgtgactttcctagcgtgga |
47462224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 124 - 213
Target Start/End: Original strand, 47468797 - 47468886
Alignment:
| Q |
124 |
ggtgtttgtttgcaggtgcaagtttgagttttgctattcttgcggagcacaatggacatcttctcatggtggttgtcaaagaaattagat |
213 |
Q |
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| T |
47468797 |
ggtgtttgtttgcaggtgcaaatttgagttttgctatgcgtgtggtgcaggatggacatcttctcatggtggttgtcaaagaaattagat |
47468886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 124 - 210
Target Start/End: Original strand, 47464682 - 47464768
Alignment:
| Q |
124 |
ggtgtttgtttgcaggtgcaagtttgagttttgctattcttgcggagcacaatggacatcttctcatggtggttgtcaaagaaatta |
210 |
Q |
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| T |
47464682 |
ggtgtttgtttgcaggtgcaaatttcagttttgctatgctcgcggagcacaatcaacatcttctcaccgtggttgtcaaagaaatta |
47464768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 124 - 198
Target Start/End: Original strand, 47456058 - 47456132
Alignment:
| Q |
124 |
ggtgtttgtttgcaggtgcaagtttgagttttgctattcttgcggagcacaatggacatcttctcatggtggttg |
198 |
Q |
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| T |
47456058 |
ggtgtttgtttgcaggtgccggtttgagttttgctatgcttgtggagaacaatggacttctactcatggtggttg |
47456132 |
T |
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