View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4811-Insertion-15 (Length: 479)

Name: NF4811-Insertion-15
Description: NF4811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4811-Insertion-15
NF4811-Insertion-15
[»] chr4 (12 HSPs)
chr4 (6-435)||(55664866-55665291)
chr4 (6-231)||(54861679-54861899)
chr4 (6-220)||(52985381-52985589)
chr4 (93-277)||(54627526-54627717)
chr4 (94-231)||(55658855-55658992)
chr4 (6-152)||(55635665-55635807)
chr4 (298-435)||(54627767-54627899)
chr4 (298-359)||(55635985-55636046)
chr4 (341-412)||(55636063-55636134)
chr4 (136-213)||(3671612-3671689)
chr4 (309-364)||(52985206-52985261)
chr4 (298-327)||(54861546-54861575)
[»] chr8 (2 HSPs)
chr8 (6-277)||(9889943-9890206)
chr8 (298-378)||(9890255-9890337)
[»] chr2 (2 HSPs)
chr2 (93-227)||(13401927-13402061)
chr2 (298-414)||(13402240-13402357)


Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 6 - 435
Target Start/End: Complemental strand, 55665291 - 55664866
Alignment:
Q  6 caggtgtatgtggcagactggtggagcttcttcagtaagtaccaatttttctatccccagtgcaccaataatttgtttcaattattgattgattattttg 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    ||||||    
T  55665291 caggtgtatgtggcagactggtggagcttcttcagtaagtaccaatttttctatccctggtgcaccaataatttgtttcaattattgatt----attttg 55665196  T
Q  106 gctctaaatgtatgcgcatgttttgaaggcacccatctccttcagtgttgactcctgtacttcacacgttgggaaatattgttgctggagacaatatgca 205  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  55665195 gctctaaatgtatgcgcatgttttgaaggtacccatctccttcagtgttgactcctgtacttcacacgctgggaaatattgttgctggggacaatatgca 55665096  T
Q  206 gactcaggtaatgtcataatggattgatataattagctgttacccaaatatttctaattaaatttaactttttattgcgtaaagaactatagattaaaat 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  55665095 gactcaggtaatgtcataatggattgatataattagctgttacccaattatttctaattaaatttaactttttattgcgtaaagaactataaattaaaat 55664996  T
Q  306 ttgaaatattataacctgaaatcattgataggtatgttttgtaagtctaattttattaagaaaaaacatcaaagtgcaataggatgtggttgttgaagct 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  55664995 ttgaaatattataacctgaaatcattgataggtatgttttgtaagtctaattttattaagagtaaacatcaaagtgcaataggatgtggttgttgaagct 55664896  T
Q  406 ggattgatagttatataaatattagcctag 435  Q
    ||||||||||||||||||||||||||||||    
T  55664895 ggattgatagttatataaatattagcctag 55664866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 6 - 231
Target Start/End: Complemental strand, 54861899 - 54861679
Alignment:
Q  6 caggtgtatgtggcagactggtggagcttcttcagtaagtaccaatttttctatccccagtgcaccaataatttgtttcaattattgattgattattttg 105  Q
    ||||||||||||||||||||||| |||| |||| ||||||||||||| || | ||||  ||   |||||| | | || ||||||||||||    ||||||    
T  54861899 caggtgtatgtggcagactggtgcagctccttctgtaagtaccaattcttat-tccctggtcagccaatattctattgcaattattgatt----attttg 54861805  T
Q  106 gctctaaatgtatgcgcatgttttgaaggcacccatctccttcagtgttgactcctgtacttcacacgttgggaaatattgttgctggagacaatatgca 205  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||| ||| ||||||  ||| |||  |||||||||||||  ||||||||||||||||    
T  54861804 gctctaaatatatgtgcatgttttgaaggcacccatctccttcagtgctgattcctgtcgttcgcacaatgggaaatattgtaactggagacaatatgca 54861705  T
Q  206 gactcaggtaatgtcataatggattg 231  Q
    ||||||||||||||||||||||||||    
T  54861704 gactcaggtaatgtcataatggattg 54861679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 6 - 220
Target Start/End: Complemental strand, 52985589 - 52985381
Alignment:
Q  6 caggtgtatgtggcagactggtggagcttcttcagtaagtaccaatttttctatccccagtgcaccaataatttgtttcaattattgattgattattttg 105  Q
    ||||| |||||||||||||||||||||| |||| ||||||||||||||| | |||||  ||  ||||||  |||||| ||||||||||||    ||||||    
T  52985589 caggtatatgtggcagactggtggagctacttctgtaagtaccaatttt-cgatccctggtcaaccaatt-tttgttgcaattattgatt----attttg 52985496  T
Q  106 gctctaaatgtatgcgcatgttttgaaggcacccatctccttcagtgttgactcctgtacttcacacgttgggaaatattgttgctggagacaatatgca 205  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||  |||||| ||  |||  | |||||||||||  |||||||| |||||||    
T  52985495 gctctaaatgtatgtgcatgttttgaaggcacccatctccttcagtgctgatacctgtaatttgcacaattggaaatattgtaactggagacgatatgca 52985396  T
Q  206 gactcaggtaatgtc 220  Q
    |||||| ||||||||    
T  52985395 gactcaagtaatgtc 52985381  T

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Target: chr4; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 93 - 277
Target Start/End: Original strand, 54627526 - 54627717
Alignment:
Q  93 attgattattttggctctaaatgtatgcgcatgttttgaaggcacccatctccttcagtgttgactcctgtacttcacacgttgggaaatattgttgctg 192  Q
    ||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||||| | ||  ||||| ||||| |||  |||||||||||||  |||    
T  54627526 attgattattttggctctaaatgtatgtgcatgttttgaagggaaccatctctttcagcgctgtttcctgcacttcgcacagtgggaaatattgtatctg 54627625  T
Q  193 gagacaatatgcagactcaggtaatgtcataatgg-------attgatataattagctgttacccaaatatttctaattaaatttaactttt 277  Q
    ||||  ||||||||||||||||| |||||||||||       |||| |||||||||||| |||| || |||||||||||||||||| |||||    
T  54627626 gagatgatatgcagactcaggtattgtcataatggattgggaattgttataattagctgctacctaattatttctaattaaatttacctttt 54627717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 94 - 231
Target Start/End: Complemental strand, 55658992 - 55658855
Alignment:
Q  94 ttgattattttggctctaaatgtatgcgcatgttttgaaggcacccatctccttcagtgttgactcctgtacttcacacgttgggaaatattgttgctgg 193  Q
    ||||||||||||||||||||| || ||||||||||||||||| ||| |||||||||||||||||||||| |||||| ||| |||||||| || |    |     
T  55658992 ttgattattttggctctaaatctacgcgcatgttttgaaggcgcccgtctccttcagtgttgactcctgcacttcaaacggtgggaaattttataaaagt 55658893  T
Q  194 agacaatatgcagactcaggtaatgtcataatggattg 231  Q
     ||  |||||||||||||||||||||||||||||||||    
T  55658892 ggatgatatgcagactcaggtaatgtcataatggattg 55658855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 6 - 152
Target Start/End: Original strand, 55635665 - 55635807
Alignment:
Q  6 caggtgtatgtggcagactggtggagcttcttcagtaagtaccaatttttctatccccagtgcaccaataatttgtttcaattattgattgattattttg 105  Q
    |||||||||||||||||||||||||||| |||| ||||| ||||||| |||||||||   |  ||||||  | | || |||||||||    |||||||||    
T  55635665 caggtgtatgtggcagactggtggagctccttctgtaagcaccaattcttctatccctgttcaaccaattttctattgcaattattg----attattttg 55635760  T
Q  106 gctctaaatgtatgcgcatgttttgaaggcacccatctccttcagtg 152  Q
     ||||||||||||| | ||||||||||||||||||||||||||||||    
T  55635761 cctctaaatgtatgtgaatgttttgaaggcacccatctccttcagtg 55635807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 298 - 435
Target Start/End: Original strand, 54627767 - 54627899
Alignment:
Q  298 attaaaatttgaaatattataacctgaaatcattgataggtatgttttgtaagtctaattttattaagaaaaaacatcaaagtgcaataggatgtggttg 397  Q
    |||||||||||||||||||||  ||| ||| |||||| |||| |||||||||||||||||| ||||||| |||||| |||| |||      |||||||||    
T  54627767 attaaaatttgaaatattatagtctgtaattattgattggtaagttttgtaagtctaatttgattaagagaaaacaccaaaatgc-----tatgtggttg 54627861  T
Q  398 ttgaagctggattgatagttatataaatattagcctag 435  Q
    |||||||| ||| || | || || ||||||||||||||    
T  54627862 ttgaagcttgatagagaattttagaaatattagcctag 54627899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 298 - 359
Target Start/End: Original strand, 55635985 - 55636046
Alignment:
Q  298 attaaaatttgaaatattataacctgaaatcattgataggtatgttttgtaagtctaatttt 359  Q
    ||||||||||||||| || ||||||||||| ||||||||||| ||||||||| |||||||||    
T  55635985 attaaaatttgaaatgttgtaacctgaaattattgataggtaagttttgtaactctaatttt 55636046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 341 - 412
Target Start/End: Original strand, 55636063 - 55636134
Alignment:
Q  341 gttttgtaagtctaattttattaagaaaaaacatcaaagtgcaataggatgtggttgttgaagctggattga 412  Q
    ||||||||| |||||||||||||||| |||||| |||| | | |||| ||||||||||||||||| ||||||    
T  55636063 gttttgtaactctaattttattaagagaaaacaccaaaatactatagtatgtggttgttgaagcttgattga 55636134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 136 - 213
Target Start/End: Complemental strand, 3671689 - 3671612
Alignment:
Q  136 acccatctccttcagtgttgactcctgtacttcacacgttgggaaatattgttgctggagacaatatgcagactcagg 213  Q
    ||||||||||||||||| ||| ||||| ||| | ||| ||||||||||||||||  |||||| | |||||||||||||    
T  3671689 acccatctccttcagtggtgattcctgcactccgcacattgggaaatattgttggcggagacgacatgcagactcagg 3671612  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 364
Target Start/End: Complemental strand, 52985261 - 52985206
Alignment:
Q  309 aaatattataacctgaaatcattgataggtatgttttgtaagtctaattttattaa 364  Q
    |||||||||| |||||||  |||||||||||  ||||||||||||||||| |||||    
T  52985261 aaatattatatcctgaaactattgataggtaaattttgtaagtctaatttgattaa 52985206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 327
Target Start/End: Complemental strand, 54861575 - 54861546
Alignment:
Q  298 attaaaatttgaaatattataacctgaaat 327  Q
    ||||||||||||||||||||||||||||||    
T  54861575 attaaaatttgaaatattataacctgaaat 54861546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 6e-38; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 6 - 277
Target Start/End: Original strand, 9889943 - 9890206
Alignment:
Q  6 caggtgtatgtggcagactggtggagcttcttcagtaagtaccaatttttctatccccagtgcaccaataatttgtttcaattattgattgattattttg 105  Q
    |||||||||||||||||||||||||||| |||  ||||||||||||| |||||||||   ||| |        ||||||||||||| ||| |||    ||    
T  9889943 caggtgtatgtggcagactggtggagctccttttgtaagtaccaattcttctatccc---tgctc--------tgtttcaattatttattaatt----tg 9890027  T
Q  106 gctctaaatgtatgcgcatgttttgaaggcacccatctccttcagtgttgactcctgtacttcacacgttgggaaatattgttgctggagacaatatgca 205  Q
    |||||||||| ||| |||||||||||||| |||| |||||||||||| ||| ||||| ||||| ||| ||||||||||||||||  |||||| | |||||    
T  9890028 gctctaaatgcatgtgcatgttttgaaggaacccttctccttcagtggtgattcctgcacttcgcacattgggaaatattgttggcggagacgacatgca 9890127  T
Q  206 gactcaggtaatgtcataa-------tggattgatataattagctgttacccaaatatttctaattaaatttaactttt 277  Q
     ||||||||||||||||||       ||||||| |  |||||| || ||||||| ||||||||||||||| ||||||||    
T  9890128 aactcaggtaatgtcataattggttgtggattgtttcaattagttgctacccaattatttctaattaaatctaactttt 9890206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 298 - 378
Target Start/End: Original strand, 9890255 - 9890337
Alignment:
Q  298 attaaaatttgaaatattataacctgaaatcattgataggtatgttttgta--agtctaattttattaagaaaaaacatcaaa 378  Q
    |||||||||||||||||||||||||||||  ||||||||||| ||||||||  |||||||||| ||||| | |||||| ||||    
T  9890255 attaaaatttgaaatattataacctgaaactattgataggtaagttttgtaagagtctaatttgattaatagaaaacaccaaa 9890337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 93 - 227
Target Start/End: Original strand, 13401927 - 13402061
Alignment:
Q  93 attgattattttggctctaaatgtatgcgcatgttttgaaggcacccatctccttcagtgttgactcctgtacttcacacgttgggaaatattgttgctg 192  Q
    ||||||| ||||| |||||||| |||  |||||| ||| ||||||||||||||||||||| |||  |||| ||||| |||| |||||||||||||| | |    
T  13401927 attgattgttttgactctaaatttatatgcatgtgttgtaggcacccatctccttcagtgctgatccctgcacttcgcacggtgggaaatattgttacgg 13402026  T
Q  193 gagacaatatgcagactcaggtaatgtcataatgg 227  Q
    ||||  ||   ||||||||||||||||||| ||||    
T  13402027 gagatgatgcacagactcaggtaatgtcatgatgg 13402061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 298 - 414
Target Start/End: Original strand, 13402240 - 13402357
Alignment:
Q  298 attaaaatttgaaatattataacct-gaaatcattgataggtatgttttgtaagtctaattttattaagaaaaaacatcaaagtgcaataggatgtggtt 396  Q
    |||||||||||||||| ||||| || ||||| |||||||| ||  ||||| ||||||||||| ||| ||  |||||| |||| ||| | || ||||||||    
T  13402240 attaaaatttgaaataatataaacttgaaattattgatagttaaattttgcaagtctaatttgatttagggaaaacaccaaaatgctaaagtatgtggtt 13402339  T
Q  397 gttgaagctggattgata 414  Q
    ||||||||| ||||||||    
T  13402340 gttgaagcttgattgata 13402357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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