View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4811-Insertion-16 (Length: 465)
Name: NF4811-Insertion-16
Description: NF4811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4811-Insertion-16 |
 | |
|
| [»] scaffold0565 (3 HSPs) |
| |
|
Alignment Details
Target: scaffold0565 (Bit Score: 173; Significance: 8e-93; HSPs: 3)
Name: scaffold0565
Description:
Target: scaffold0565; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 256 - 465
Target Start/End: Original strand, 3186 - 3395
Alignment:
| Q |
256 |
ctagttactattgaaaaagattgatcgtgaatcaaatattcatgtgattaattttcattcattgataatgtaannnnnnnaacacatacatccaatcaca |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3186 |
ctagttactattgaaaaagattgatcgtgaatcaaatattcatgtgattaattttcattcattgataatgtaatttttttaacacatacatccaatcaca |
3285 |
T |
|
| Q |
356 |
tcacggcaaatagataatttcaaaaaatctgaaagaaaataatatcttaccaattatccattttctatgaaaatgtcatatgccattaaatagtattcac |
455 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3286 |
tcacggcaaatagataatatcaaaaaatctaaaagaaaataatatcttatcaattatccattttctatgaaaatgtcatatgccatgaaatagtattcac |
3385 |
T |
|
| Q |
456 |
tattcatcat |
465 |
Q |
| |
|
|||||||||| |
|
|
| T |
3386 |
tattcatcat |
3395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0565; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 7 - 156
Target Start/End: Original strand, 2156 - 2306
Alignment:
| Q |
7 |
aattacaact-aatgtatttccacttgtatccttatcaatggattccacaaagtaacttgttttgacttgaatcctaccacccacttggcctcaaaaggt |
105 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2156 |
aattacaactcaatgtatttccacttgtatccttatcaatggattccactaactaacttgatttgacttgaatcctaccacccacttggcctcaaaaggt |
2255 |
T |
|
| Q |
106 |
aattgttatcatggttttacaatattcatattaatataatcgttttccttt |
156 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2256 |
tattgttatcatggttttactatattcatattaatataatcgttttccttt |
2306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0565; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 261
Target Start/End: Original strand, 2348 - 2380
Alignment:
| Q |
229 |
ttttaatcttcgatatcttactttagcctagtt |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
2348 |
ttttaatcttcgatatcttactttagcctagtt |
2380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University