View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4811-Insertion-17 (Length: 216)
Name: NF4811-Insertion-17
Description: NF4811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4811-Insertion-17 |
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| [»] chr7 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 8 - 216
Target Start/End: Original strand, 21971395 - 21971602
Alignment:
| Q |
8 |
aaatagcaataacttaattttgatacttttgacttttgctaaggggtaagcattaaaaacacgatgggaggaatttacgaagcctagttatgtttaccat |
107 |
Q |
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| T |
21971395 |
aaatagcaataacttaattttaatacttttgacttttgctaaggggtaagcattaaaaacactatgggaggaatttacgaagcctagttatgtttaccat |
21971494 |
T |
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| Q |
108 |
cctcaatttctttaaactgtaaatcaatttgggcaatgtaaaccggtgccccgaggaccaataaataataattaaataaatgatctcccttaactcatct |
207 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |||| |||| ||| |||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
21971495 |
cctctatttctttaaactgtaaatcaatttgggcaatgcaaacgggtg-cccaaggaacaataaataataattaaataaatgatctcacttaactcatct |
21971593 |
T |
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| Q |
208 |
caattaaag |
216 |
Q |
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||||||||| |
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| T |
21971594 |
caattaaag |
21971602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 31167063 - 31167007
Alignment:
| Q |
161 |
aggaccaataaataataattaaataaatg-atctcccttaactcatctcaattaaag |
216 |
Q |
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|||| ||||||||| |||||||||||||| ||||| ||||| ||||||||||||||| |
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| T |
31167063 |
aggaacaataaatagtaattaaataaatgaatctcacttaattcatctcaattaaag |
31167007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 26759216 - 26759272
Alignment:
| Q |
161 |
aggaccaataaataataattaaataaat-gatctcccttaactcatctcaattaaag |
216 |
Q |
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| T |
26759216 |
aggaacaataaatagtaattaaataaatggatctcacttaattcatctcaattaaag |
26759272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 39865407 - 39865351
Alignment:
| Q |
161 |
aggaccaataaataataattaaataaatg-atctcccttaactcatctcaattaaag |
216 |
Q |
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|||| ||||||||| |||||||||||||| ||||| ||||| ||||||||||||||| |
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| T |
39865407 |
aggaacaataaatagtaattaaataaatgaatctcacttaattcatctcaattaaag |
39865351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 29770779 - 29770835
Alignment:
| Q |
161 |
aggaccaataaataataattaaataaatg-atctcccttaactcatctcaattaaag |
216 |
Q |
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|||| ||||||||| |||||||||||||| ||||| ||||| |||||||| |||||| |
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| T |
29770779 |
aggaacaataaatagtaattaaataaatgaatctcacttaattcatctcagttaaag |
29770835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 28103811 - 28103864
Alignment:
| Q |
161 |
aggaccaataaataataattaaataaat-gatctcccttaactcatctcaatta |
213 |
Q |
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| T |
28103811 |
aggaacaataaataatcattaaataaatggatctcacttaattcatctcaatta |
28103864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 39121943 - 39121887
Alignment:
| Q |
161 |
aggaccaataaataataattaaataaatg-atctcccttaactcatctcaattaaag |
216 |
Q |
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|||| ||||||||| |||||||||||||| ||||| ||||| | ||||||||||||| |
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| T |
39121943 |
aggaacaataaatagtaattaaataaatgaatctcacttaatttatctcaattaaag |
39121887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 23566998 - 23566942
Alignment:
| Q |
161 |
aggaccaataaataataattaaataaatg-atctcccttaactcatctcaattaaag |
216 |
Q |
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|||| ||||||||| |||||||||||||| || || ||||| ||||||||||||||| |
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| T |
23566998 |
aggaacaataaatagtaattaaataaatgaatatcacttaattcatctcaattaaag |
23566942 |
T |
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