View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4811-Insertion-3 (Length: 845)
Name: NF4811-Insertion-3
Description: NF4811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4811-Insertion-3 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-125; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 586 - 845
Target Start/End: Complemental strand, 8885526 - 8885269
Alignment:
| Q |
586 |
gggattgactgatcagtgaagtttcttgggtgtgtgatatgatagatagatagatataaacttcctatggatctgatcctcttgattgttaagttactgt |
685 |
Q |
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| T |
8885526 |
gggattgactgatcagtgaagtttcttgggtgtgtgatatgatagatagatagatataaacttcctatggatctgatcctcttgattgttaagttactgt |
8885427 |
T |
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| Q |
686 |
ataggaaggggagataaatatgaaagaaagggaaatgagagacagatcgatgctacttaagtattaaaggattgaattggacttagaaagtcttttcctt |
785 |
Q |
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| T |
8885426 |
ataggaagaggagataaatatgaaagaaagggaaatgagagacagatcgatgctacttaagtattaaaggattgaatt-gacctagaaagtcttttctct |
8885328 |
T |
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| Q |
786 |
ctatctccctttgttgatattttatttattattttggatagacaagaattattattaaga |
845 |
Q |
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| T |
8885327 |
ctatctccctttgttgatattttatttattatttt-gatagacaagaattattattaaga |
8885269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 308 - 509
Target Start/End: Complemental strand, 8885804 - 8885603
Alignment:
| Q |
308 |
tctataattagtatcttaattcttaattaaaagggtcataaaaagacatgttttataaagagaaagtgtgatgagataagataataccgcgagaacagtg |
407 |
Q |
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| T |
8885804 |
tctataattagtatcttaattcttaattaaaagggtcataaaaagacatgttttataaagagaaagtgtgatgagataagataataccgcgagaacagtg |
8885705 |
T |
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| Q |
408 |
tcacagaaattgcaatggacataacaaagctggtccgaaggagagagttgttgctgttgttgctggtccggtgaaaaggaagtggatgatgaagaggaca |
507 |
Q |
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| T |
8885704 |
tcgcagaaattgcaatggacataacaaagctggtccgaaggagagagttgttgctgttgttgctggtccggtgaaaaggaagtggatgatgaagaggaca |
8885605 |
T |
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| Q |
508 |
tg |
509 |
Q |
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| T |
8885604 |
tg |
8885603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 117 - 280
Target Start/End: Complemental strand, 8885993 - 8885830
Alignment:
| Q |
117 |
cacacataccataagagtttgagggttgaagtaagtgtgtccaaggtgaagctgattaggagcaggaaggagcaaagcacgcatgttaactgagagaagg |
216 |
Q |
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| T |
8885993 |
cacacataccataagagtttgagggttgaagtaagtgtgtccaaggtgaagctgattaggagcaggaaggagcaaagcacgcatgttaactgagagaagg |
8885894 |
T |
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| Q |
217 |
ttggtgcaatgaccacatctcactgtcacagtcttgaacaaacttgtgcaaggaacactcacct |
280 |
Q |
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| T |
8885893 |
ttggtgcaatgaccacatctcactgtcacagtcttgaacaaacttgtgcaaggaacactcacct |
8885830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 193 - 280
Target Start/End: Original strand, 42026227 - 42026314
Alignment:
| Q |
193 |
gcacgcatgttaactgagagaaggttggtgcaatgaccacatctcactgtcacagtcttgaacaaacttgtgcaaggaacactcacct |
280 |
Q |
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| T |
42026227 |
gcacgcatgttgactggaagcagattagtgcaatgaccgcatctcacagtcacggtcttgaacaagcttgtgcaaggaacactcacct |
42026314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 101
Target Start/End: Complemental strand, 8886023 - 8885993
Alignment:
| Q |
71 |
atatttgcttgtataaaaatcacacaaacac |
101 |
Q |
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| T |
8886023 |
atatttgcttgtataaaaatcacacaaacac |
8885993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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