View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4811-Insertion-5 (Length: 527)
Name: NF4811-Insertion-5
Description: NF4811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4811-Insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 8 - 267
Target Start/End: Complemental strand, 6686987 - 6686730
Alignment:
| Q |
8 |
aatgcaaggtggttttacctttaaatatgagaatcatacgtgtattgagtattcttgattagaggtgattttatctttgtaatgtacgttaacctaaaca |
107 |
Q |
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| T |
6686987 |
aatgcaaggtggttttatctttaaacatgagaatcatacgtgtattgagtattcttgattagaggtgattttatctttgtaatgtacattaacctaaaca |
6686888 |
T |
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| Q |
108 |
tagacgcaattcaccnnnnnnnncatatatcaataaaacaattcattaaaaattaattttcgtcattgactaaatcaaattacacacatgacacatggtg |
207 |
Q |
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| T |
6686887 |
tagacgcaattcaccttttttttc--atatcaataaaacaaatcattaaaaatcaattttcgtcattcactaaatcaaattacacacatgacacatggtg |
6686790 |
T |
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| Q |
208 |
tataacaacaaacacaactaaatcttatcctattaagtttgatcggttatatggattaaa |
267 |
Q |
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| T |
6686789 |
tataacaacatacacaactaaatcttatcctattaagttgggtcggttacattgattaaa |
6686730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 300 - 426
Target Start/End: Complemental strand, 6686709 - 6686590
Alignment:
| Q |
300 |
attgtgctacgctcgcaaatgcatcatcttgggcattatttgattgtgccctgaaggctgaaggctaacagtttagatagtgattatcaagctgcttaaa |
399 |
Q |
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| T |
6686709 |
attgtgctacgctcgcaaatgcataatcttgggcattatttgattgtgccctgaaggct-------aacagtttagatagtgattatcaagctgcttaaa |
6686617 |
T |
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| Q |
400 |
aagtagcagttgccctacgctctatac |
426 |
Q |
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| T |
6686616 |
aagtagcagttaccctacgctctatac |
6686590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 424 - 501
Target Start/End: Complemental strand, 6686279 - 6686202
Alignment:
| Q |
424 |
tacaaattagtgatgtaaaaaatagtgtatacaaagtaggagtaagtattaaaactctagtacacaaagaatgtttat |
501 |
Q |
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| T |
6686279 |
tacaaattagtgatgtaaaaaatagtgtatacaaagtaggagtaagtattaaaactctagtacacgaagaatgtttat |
6686202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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