View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4811-Insertion-6 (Length: 394)
Name: NF4811-Insertion-6
Description: NF4811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4811-Insertion-6 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 158 - 394
Target Start/End: Complemental strand, 47066525 - 47066289
Alignment:
| Q |
158 |
gagaatatggcccataggaaatgtttacttgaattagcttatcaaaaaattgtgtagtaaattataagctataagctctcgagaaagtgacagttagcac |
257 |
Q |
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| T |
47066525 |
gagaatatggcccataggaaatgtttacttgaattagcttatcaaaaaattgtgtagtaaattataagctataagctctcgagaaagtgacagttagcac |
47066426 |
T |
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| Q |
258 |
aaatattttatagtcaaatgagcttataaacataagttataagctataagctcaaaaatggatctttccaaacatatatgacttgtgaaaaacgcaatat |
357 |
Q |
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| T |
47066425 |
aaatattttttagtcaaatgagcttataaacataagttataagctataagctcaaaaatggatctttccaaacatatatgacttgtgaaaaacgcaatat |
47066326 |
T |
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| Q |
358 |
atcatgaattttgtacaaggaaaacactttttattta |
394 |
Q |
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| T |
47066325 |
atcatgaattttgtacaaggaaaacactttttattta |
47066289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 47066673 - 47066555
Alignment:
| Q |
11 |
gcctcacaataaacagtcgtggaaaattagcatagcaagagtgcaagaccttgaccaagcaagtcttcccttgagcctaccaatatccatcaggaaacaa |
110 |
Q |
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| T |
47066673 |
gcctcacaataaacagtcgtggaaaattagcatagcaagagtgcaagaccttgaccaagcaagtcttcccttgagcctaccaatatccatcaggaaacaa |
47066574 |
T |
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| Q |
111 |
aatatctttcaatgaagac |
129 |
Q |
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| T |
47066573 |
aatatctttcaatgaagac |
47066555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 47077651 - 47077765
Alignment:
| Q |
10 |
tgcctcacaataaacagtcgtggaaaattagcatagcaagagtgcaagaccttgaccaagcaagtcttcccttgagcctaccaatatccatcaggaaaca |
109 |
Q |
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| T |
47077651 |
tgcctcacaataaacagttgtggaaaattagcatagcaagagtgcaagaccttgaccaagcaagtcttcccttgagc---ccaa-atccatcaggaaa-g |
47077745 |
T |
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| Q |
110 |
aaatatctttcaatgaagac |
129 |
Q |
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| T |
47077746 |
aaatatcttttaatgaagac |
47077765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 315
Target Start/End: Complemental strand, 39033530 - 39033477
Alignment:
| Q |
263 |
ttttatagtcaaatgagcttataa-acataagttataagctataagctcaaaaa |
315 |
Q |
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|||| |||||||| |||||||| | ||||||| ||||||||||||||||||||| |
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| T |
39033530 |
ttttctagtcaaaagagcttatcagacataagatataagctataagctcaaaaa |
39033477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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