View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4811-Insertion-8 (Length: 215)
Name: NF4811-Insertion-8
Description: NF4811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4811-Insertion-8 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 214
Target Start/End: Complemental strand, 36672875 - 36672668
Alignment:
| Q |
7 |
actattgcgcggcagtcgtaagaactgttaaggttatgttaccaatttttctcttttctttgaagtctttacctatttctaatacctaccatagcgaaaa |
106 |
Q |
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| T |
36672875 |
actattgcgcggcagtcgtaagaactgttaaggttatgttaccaatttttctcttttctttgaagtctttacctatttctaatacctaccatagcgaaaa |
36672776 |
T |
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| Q |
107 |
catttttgaaagctcgattaatatgtttttaaaagtcaaagttacttgattctgcaaaatgcacctaaagaatcaattacatggccatcaagacatgcta |
206 |
Q |
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| T |
36672775 |
catttttgaaagctcgattaatatgtttttaaaagtcaaagttacttgattctgcaaaatgcacctaaagaatcaattacatggccatcaagacatgcta |
36672676 |
T |
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| Q |
207 |
ataactta |
214 |
Q |
| |
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|| ||||| |
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| T |
36672675 |
attactta |
36672668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 36683224 - 36683155
Alignment:
| Q |
109 |
tttttgaaagctcgattaatatgtttttaaaagtcaaagttacttgattctgcaaaatgcacctaaagaa |
178 |
Q |
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| T |
36683224 |
tttttcaaagctcgtttaatatatttttgaaagtcagagttacttacttttgcaaaatgcacctaaagaa |
36683155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 115 - 153
Target Start/End: Complemental strand, 56462414 - 56462376
Alignment:
| Q |
115 |
aaagctcgattaatatgtttttaaaagtcaaagttactt |
153 |
Q |
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| T |
56462414 |
aaagctcgattaatatatttttaaaagtcaaagttactt |
56462376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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