View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4811-Insertion-9 (Length: 122)
Name: NF4811-Insertion-9
Description: NF4811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4811-Insertion-9 |
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| [»] chr8 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 115; Significance: 7e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 7e-59
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 13393213 - 13393327
Alignment:
| Q |
8 |
ttgacaagtttatgatccataagaacagtcttggtcaaaaactcaacaccaattgtagctttagatttcaaatgaaactcatttctaacaaatctattca |
107 |
Q |
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| T |
13393213 |
ttgacaagtttatgatccataagaacagtcttggtcaaaaactcaacaccaattgtagctttagatttcaaatgaaactcatttctaacaaatctattca |
13393312 |
T |
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| Q |
108 |
aaagctgagattttc |
122 |
Q |
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| T |
13393313 |
aaagctgagattttc |
13393327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 5e-35
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 41766864 - 41766762
Alignment:
| Q |
20 |
tgatccataagaacagtcttggtcaaaaactcaacaccaattgtagctttagatttcaaatgaaactcatttctaacaaatctattcaaaagctgagatt |
119 |
Q |
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|||| |||||||||| | |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
41766864 |
tgatacataagaacaattttggtcaaaaactcaataccaactgtagctttagatttcaaatgaaactcatttctatcaaacctattcaaaagctgagatt |
41766765 |
T |
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| Q |
120 |
ttc |
122 |
Q |
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||| |
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| T |
41766764 |
ttc |
41766762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 2e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 21247959 - 21247857
Alignment:
| Q |
20 |
tgatccataagaacagtcttggtcaaaaactcaacaccaattgtagctttagatttcaaatgaaactcatttctaacaaatctattcaaaagctgagatt |
119 |
Q |
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|||| |||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
21247959 |
tgatgcataagaacagttttggtcaaaaactcaataccaactgtagctttagatttcaaatgaaactcatttctatcaaacctattcaaaagctgagatt |
21247860 |
T |
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| Q |
120 |
ttc |
122 |
Q |
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||| |
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| T |
21247859 |
ttc |
21247857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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