View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4811_low_1 (Length: 496)
Name: NF4811_low_1
Description: NF4811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4811_low_1 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 140 - 496
Target Start/End: Original strand, 36672993 - 36673347
Alignment:
| Q |
140 |
tggaatgaggagagtttaggttcattttcttaatacatgtgggggagatatattatacatatatttgagcaataacacactgataggcatagctgttcaa |
239 |
Q |
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| T |
36672993 |
tggaatgaggagagtttaggttcattttcttaatacatgttggggagatatattatacatatatttgagcaataacacactgataggcatagctgttcaa |
36673092 |
T |
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| Q |
240 |
ctttttattattttcaggagagcaatacaactttttattacaatgatacagagagtcgtaacattannnnnnnctccgatataacaaaacctatggatgt |
339 |
Q |
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| T |
36673093 |
ctttttatt-ttttcaggagagcaatacaactttttattacaatgatacagagagtcgtaacattatttttttctccgatataacaaaacctatggatgc |
36673191 |
T |
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| Q |
340 |
gtacacctgatcttattatttaaaactcaacaatttcgtctatagtaattgaagtagcatattctaatccccttaatctgtcagaattattaacagagct |
439 |
Q |
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| T |
36673192 |
gtacacctgatcttattatttaaa-ctcaacaatttcgtctatagtaattgaagtagcatattctaatccccttaatctgtcagaattattaacagagct |
36673290 |
T |
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| Q |
440 |
attttgtcccttccttacattgctcatattgttgtaaacttcaagcattgttggcct |
496 |
Q |
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| T |
36673291 |
attttgtcccttccttacattgctcatattgttgtaaacttcaagcattgttggcct |
36673347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 348 - 496
Target Start/End: Original strand, 36675954 - 36676102
Alignment:
| Q |
348 |
gatcttattatttaaaactcaacaatttcgtctatagtaattgaagtagcatattctaatccccttaatctgtcagaattattaacagagctattttgtc |
447 |
Q |
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| T |
36675954 |
gatctaattatttaaaactcgacaatttcgtccataggaatagaagaagcatattctaatccccttaatgtgtcagaatcatcaccagaaccatttggtc |
36676053 |
T |
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| Q |
448 |
ccttccttacattgctcatattgttgtaaacttcaagcattgttggcct |
496 |
Q |
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| T |
36676054 |
ccttcctaacgttcctcatattgttgtaaacttcaagcattgttggcct |
36676102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 396 - 492
Target Start/End: Original strand, 36695531 - 36695627
Alignment:
| Q |
396 |
gcatattctaatccccttaatctgtcagaattattaacagagctattttgtcccttccttacattgctcatattgttgtaaacttcaagcattgttg |
492 |
Q |
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| T |
36695531 |
gcatattcaaatccccttaatgtgtcagaatcatcaccataaccatttggtggcttcctgtcattgctcatattgttgtaaacttcaagcattgttg |
36695627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 36675810 - 36675867
Alignment:
| Q |
159 |
gttcattttcttaatacatgtgggggagatatattatacatatatttgagcaataaca |
216 |
Q |
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| T |
36675810 |
gttcaattttttaatatatgtgggggagacatattatacatatatttgaccaataaca |
36675867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 36672870 - 36672905
Alignment:
| Q |
17 |
aatagtccctacatctgcagtagaggattagggttc |
52 |
Q |
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| T |
36672870 |
aatagtccctacatcagcagtagaggattagggttc |
36672905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 493
Target Start/End: Original strand, 36683740 - 36683775
Alignment:
| Q |
458 |
attgctcatattgttgtaaacttcaagcattgttgg |
493 |
Q |
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| T |
36683740 |
attgctcaaattgttgtaaacttcaagcattgttgg |
36683775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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