View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4811_low_3 (Length: 331)
Name: NF4811_low_3
Description: NF4811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4811_low_3 |
 | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 6 - 316
Target Start/End: Original strand, 45769008 - 45769319
Alignment:
| Q |
6 |
agtgagaagaattcctagataaatttcaagatgtttgcatcataatttgaagtaattaattgggaagaatagtactgtaccttgaggatggaagatccac |
105 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45769008 |
agtgataagaattcctagacaaatttcaagatgtttgcatcataatttgaagtaattaattgggaagaatagtactgtaccttgaggatggaagatccac |
45769107 |
T |
|
| Q |
106 |
cgaattttgtactatagacatgatgtggttgctcatattcttcagggacctacaattaagtagataaatttacaacacaaaaggagaggttaatgatcac |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45769108 |
cgaattttgtactatagacatgatgtggttgctcatattcttcagggacctacaattaagtagataaatttacaacacaaaaggagaggttaatgatcac |
45769207 |
T |
|
| Q |
206 |
caatcgttatttttaagccagtcaaaaaacaatttattttttgagtgatact-aaatacttataattcaatttaaatgttaaccataatccagcctaaaa |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
45769208 |
caatcgttatttttaagccagtcaaaaaacaatttattttttgagtaatactaaaatacttataattcaatttaaatgttaaccataatccaacctaaaa |
45769307 |
T |
|
| Q |
305 |
cagcatgtatat |
316 |
Q |
| |
|
|||||||||||| |
|
|
| T |
45769308 |
cagcatgtatat |
45769319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 156
Target Start/End: Original strand, 40432 - 40505
Alignment:
| Q |
83 |
taccttgaggatggaagatccaccgaattttgtactatagacatgatgtggttgctcatattcttcagggacct |
156 |
Q |
| |
|
|||||||||||||||||||||| | ||||| |||||||||||| || |||| |||||||| || ||||| |||| |
|
|
| T |
40432 |
taccttgaggatggaagatccatcaaatttcgtactatagacacgaagtgggtgctcataatcatcaggaacct |
40505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University