View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4812-Insertion-1 (Length: 1027)

Name: NF4812-Insertion-1
Description: NF4812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4812-Insertion-1
NF4812-Insertion-1
[»] chr3 (35 HSPs)
chr3 (133-636)||(38393631-38394134)
chr3 (824-1027)||(38210067-38210276)
chr3 (824-1011)||(50493676-50493869)
chr3 (693-824)||(38393439-38393574)
chr3 (824-1003)||(53896570-53896754)
chr3 (881-1003)||(25388655-25388781)
chr3 (824-1003)||(6063822-6064006)
chr3 (824-1003)||(22114657-22114842)
chr3 (840-1003)||(5899476-5899643)
chr3 (824-1003)||(5885983-5886168)
chr3 (824-1003)||(18099522-18099707)
chr3 (823-925)||(35777162-35777265)
chr3 (8-88)||(38394179-38394259)
chr3 (824-908)||(7606878-7606963)
chr3 (825-967)||(5191374-5191520)
chr3 (880-924)||(6066211-6066255)
chr3 (824-905)||(18097339-18097422)
chr3 (824-925)||(38889757-38889860)
chr3 (950-1003)||(6066149-6066203)
chr3 (855-925)||(11162923-11162993)
chr3 (882-1003)||(10956379-10956505)
chr3 (930-1003)||(3859357-3859433)
chr3 (819-868)||(6066246-6066296)
chr3 (855-925)||(11170177-11170247)
chr3 (824-868)||(25388618-25388663)
chr3 (22-75)||(54237485-54237538)
chr3 (22-57)||(3755607-3755642)
chr3 (22-64)||(29127956-29127998)
chr3 (8-57)||(47219166-47219216)
chr3 (824-868)||(3859317-3859362)
chr3 (875-950)||(10085481-10085557)
chr3 (875-950)||(10192401-10192477)
chr3 (824-898)||(32218836-32218912)
chr3 (824-922)||(32264481-32264580)
chr3 (22-75)||(49021220-49021273)
[»] chr7 (16 HSPs)
chr7 (824-1011)||(1047310-1047503)
chr7 (824-1027)||(9027477-9027687)
chr7 (824-1027)||(22136878-22137088)
chr7 (824-1027)||(40551905-40552115)
chr7 (824-1017)||(2935070-2935269)
chr7 (824-1027)||(22107867-22108077)
chr7 (824-1027)||(40549627-40549837)
chr7 (822-925)||(40837159-40837263)
chr7 (822-967)||(3878320-3878469)
chr7 (824-905)||(26804345-26804428)
chr7 (824-1003)||(27306583-27306767)
chr7 (22-75)||(365180-365233)
chr7 (860-967)||(25542317-25542427)
chr7 (10-64)||(38578894-38578949)
chr7 (22-75)||(16802163-16802216)
chr7 (22-75)||(48804723-48804776)
[»] chr4 (29 HSPs)
chr4 (824-1011)||(16932167-16932360)
chr4 (824-1011)||(16934521-16934714)
chr4 (824-1011)||(22783124-22783317)
chr4 (824-1011)||(22780759-22780952)
chr4 (824-1003)||(9176850-9177035)
chr4 (824-1012)||(9174490-9174684)
chr4 (824-1003)||(11006595-11006781)
chr4 (823-925)||(7941132-7941236)
chr4 (826-967)||(51015042-51015187)
chr4 (823-925)||(11434768-11434872)
chr4 (823-1003)||(37089728-37089915)
chr4 (824-1003)||(3824927-3825112)
chr4 (824-967)||(5637860-5638006)
chr4 (824-1003)||(36919941-36920125)
chr4 (826-967)||(22803125-22803270)
chr4 (824-1003)||(18846923-18847110)
chr4 (855-967)||(31849991-31850106)
chr4 (855-967)||(22044781-22044898)
chr4 (881-1003)||(11008946-11009074)
chr4 (33-86)||(43468400-43468453)
chr4 (846-905)||(22801296-22801356)
chr4 (824-961)||(36921893-36922033)
chr4 (10-64)||(7246673-7246728)
chr4 (22-57)||(31588728-31588763)
chr4 (8-64)||(5472875-5472932)
chr4 (20-57)||(8889062-8889099)
chr4 (22-63)||(14077988-14078029)
chr4 (854-907)||(22048491-22048544)
chr4 (34-75)||(50485997-50486038)
[»] chr6 (13 HSPs)
chr6 (822-1027)||(26068672-26068884)
chr6 (824-1027)||(33310954-33311164)
chr6 (824-1027)||(26066401-26066611)
chr6 (824-1027)||(33308685-33308895)
chr6 (823-1027)||(29755069-29755280)
chr6 (822-965)||(14507569-14507718)
chr6 (855-969)||(19227799-19227916)
chr6 (855-965)||(8995287-8995400)
chr6 (855-965)||(9019734-9019847)
chr6 (828-967)||(11983421-11983562)
chr6 (824-905)||(1072312-1072395)
chr6 (23-64)||(8932703-8932744)
chr6 (23-64)||(8944169-8944210)
[»] chr1 (23 HSPs)
chr1 (824-1003)||(47179428-47179612)
chr1 (828-980)||(16225891-16226047)
chr1 (824-1003)||(47177078-47177261)
chr1 (824-1003)||(51752104-51752290)
chr1 (823-1003)||(51749777-51749964)
chr1 (824-1003)||(13761577-13761762)
chr1 (843-1003)||(6823643-6823809)
chr1 (824-958)||(23783238-23783376)
chr1 (824-925)||(6822775-6822878)
chr1 (824-969)||(20302198-20302348)
chr1 (853-925)||(16231371-16231443)
chr1 (824-1003)||(10400184-10400369)
chr1 (824-925)||(20291280-20291383)
chr1 (950-1003)||(23783389-23783443)
chr1 (950-1003)||(16231450-16231504)
chr1 (22-57)||(45726468-45726503)
chr1 (821-905)||(47451402-47451488)
chr1 (22-75)||(33004032-33004085)
chr1 (856-905)||(13214854-13214904)
chr1 (22-64)||(28324608-28324650)
chr1 (23-65)||(48798097-48798139)
chr1 (22-75)||(26325850-26325903)
chr1 (930-1003)||(28207422-28207498)
[»] chr2 (16 HSPs)
chr2 (824-1027)||(36559148-36559358)
chr2 (823-1027)||(45332466-45332676)
chr2 (824-1003)||(24162566-24162752)
chr2 (824-968)||(19502402-19502550)
chr2 (823-958)||(36561539-36561678)
chr2 (828-1003)||(27104519-27104700)
chr2 (824-968)||(19504736-19504884)
chr2 (930-1027)||(36561425-36561526)
chr2 (824-1003)||(21521049-21521234)
chr2 (824-905)||(43624002-43624085)
chr2 (22-63)||(2550905-2550946)
chr2 (824-905)||(40032503-40032586)
chr2 (22-57)||(14169643-14169678)
chr2 (22-88)||(6358154-6358220)
chr2 (8-57)||(10046511-10046560)
chr2 (22-63)||(13026439-13026480)
[»] chr5 (24 HSPs)
chr5 (824-1026)||(10749505-10749714)
chr5 (824-1027)||(15354855-15355065)
chr5 (824-1027)||(15357131-15357341)
chr5 (824-1017)||(10756960-10757159)
chr5 (824-1003)||(34477448-34477632)
chr5 (824-1001)||(31544798-31544981)
chr5 (823-1003)||(31542441-31542627)
chr5 (824-1027)||(23664834-23665044)
chr5 (824-1027)||(23667109-23667319)
chr5 (824-1027)||(23793543-23793753)
chr5 (881-1027)||(31179744-31179896)
chr5 (824-925)||(34479870-34479972)
chr5 (824-1027)||(38960415-38960604)
chr5 (855-1003)||(38881877-38882030)
chr5 (824-925)||(25921889-25921992)
chr5 (824-925)||(2174680-2174782)
chr5 (822-925)||(39797847-39797951)
chr5 (828-967)||(4236374-4236517)
chr5 (824-887)||(21684905-21684969)
chr5 (824-905)||(18186504-18186587)
chr5 (950-1003)||(34479809-34479863)
chr5 (824-868)||(31179888-31179933)
chr5 (824-905)||(20504369-20504452)
chr5 (824-905)||(20507918-20508001)
[»] scaffold0127 (1 HSPs)
scaffold0127 (824-1003)||(12870-13054)
[»] chr8 (9 HSPs)
chr8 (824-1003)||(43079347-43079531)
chr8 (824-1003)||(43081722-43081906)
chr8 (824-1003)||(18812668-18812852)
chr8 (823-1003)||(18810482-18810667)
chr8 (824-1003)||(44720617-44720802)
chr8 (828-967)||(14807552-14807695)
chr8 (824-967)||(27826782-27826929)
chr8 (824-967)||(27829093-27829240)
chr8 (844-925)||(3886337-3886419)
[»] scaffold0140 (2 HSPs)
scaffold0140 (824-1027)||(21915-22125)
scaffold0140 (824-1027)||(24190-24400)
[»] scaffold0472 (1 HSPs)
scaffold0472 (822-1003)||(5925-6111)
[»] scaffold0068 (1 HSPs)
scaffold0068 (824-887)||(28941-29005)
[»] scaffold0025 (1 HSPs)
scaffold0025 (828-898)||(69757-69829)
[»] scaffold0223 (1 HSPs)
scaffold0223 (8-57)||(16904-16954)


Alignment Details
Target: chr3 (Bit Score: 472; Significance: 0; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 133 - 636
Target Start/End: Complemental strand, 38394134 - 38393631
Alignment:
Q  133 ctgcatttcgagtagctatcaaggctaatttacagtcggacgatgcaaaccaggtgtttgcataaatttcatagtggtttatgccgcccataatgaagtt 232  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38394134 ctgcatttggagtagctatcaaggctaatttacagtcggacgatgcaaaccaggtgtttgcataaatttcatagtggtttatgccgcccataatgaagtt 38394035  T
Q  233 ctagtttgtggtgttagtggaaatggtacttcaaaatgtggggttgaccctctacaataatttacttttgcattttaacaaccactacgattttttaaat 332  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38394034 ctagtttgtggtggcagtggaaatggtacttcaaaatgtggggttgaccctctacaataatttacttttgcattttaacaaccactacgattttttaaat 38393935  T
Q  333 tcacatttgatttaaatatgccctaattcattgaatagtacatagtacatcagcatacacttcaactaacaaagacaaagagagggaccaagacgactca 432  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  38393934 tcacatttgatttaaacatgccctaattcattgaatagtacatagtacatcagcatacacttcaactaacaaagacaaggagagggaccaacacgactca 38393835  T
Q  433 tttgcaaaattagggtgttgaaagctcccactttttcaattttaagagattaacaaatatatttaagtgtcaatttatctcatcattaattaaaccttaa 532  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  38393834 tttgcaaaattagggtgttgaaagctcccactttttcaattttaagagattaaaaaatatatttaagtgtcaatttatctcatcattaattaaaccttaa 38393735  T
Q  533 gagattaaaaaatatatttgtgtcaatttgtcatcattaattaaacctacacattttctatttgagaggaactatcaagaatgatccaaaaattaatgag 632  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38393734 gagattaaaaaatatatttgtgtcaatttgtcatcattaattaaacctacacattttgtatttgagaggaactatcaagaatgatccaaaaattaatgag 38393635  T
Q  633 tcag 636  Q
    ||||    
T  38393634 tcag 38393631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 824 - 1027
Target Start/End: Original strand, 38210067 - 38210276
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||     
T  38210067 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacggctgggcaacgtggcacgatggaggttttagttttttgggcaaggcactgga 38210166  T
Q  922 aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttg-tacagtttttgttac 1017  Q
    |||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||    
T  38210167 aaaatcgtggcacgatggggtctcatcgtggcacgatagtgcgctggcggataaaaataaaacgtatttttgggagcagatttgttacag-ttttgttac 38210265  T
Q  1018 -gatttgttac 1027  Q
     ||||||||||    
T  38210266 agatttgttac 38210276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 122; E-Value: 5e-62
Query Start/End: Original strand, 824 - 1011
Target Start/End: Original strand, 50493676 - 50493869
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||  | ||||||| |||||||||||||||||||||||||||||||||||||||||     
T  50493676 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgatagctgggcaacgtggcacgatggaggttttagttttttgggcaaggcactgga 50493775  T
Q  922 aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttg-tacagtttt 1011  Q
    |||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  50493776 aaaatcgtggcacgatggagtctcatcgtggcacgatggtgcgctggcggataaaaataaaacgtatttttgggagcagatttgttacagtttt 50493869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 115; E-Value: 7e-58
Query Start/End: Original strand, 693 - 824
Target Start/End: Complemental strand, 38393574 - 38393439
Alignment:
Q  693 accattagccaacaatttaattaattgttgcttctacattttcattcaacttaacttctcccttatttc----cttcttccaatagtgacttgcaaccaa 788  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||    
T  38393574 accattagccaacaatttaattaattgttgcttctacattttcattcaacttaacttctcccttatttaattacttcttccaatagtgacttgcaaccaa 38393475  T
Q  789 gtgatctctacgataattggcaactatgatatgact 824  Q
    ||||||||||||||||||||||||||||||||||||    
T  38393474 gtgatctctacgataattggcaactatgatatgact 38393439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 824 - 1003
Target Start/End: Complemental strand, 53896754 - 53896570
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||  | ||||||| ||||||||||||||||||||||||||||||||||| |||||     
T  53896754 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgattgctgggcaacgtggcacgatggaggttttagttttttgggcaaggtactgga 53896655  T
Q  922 aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttgt 1003  Q
    |||||||| |||||||||||||||||||| |||||||||||| || |||||||||||| ||||||||||||||||||||||||||    
T  53896654 aaaatcgtggcacgatggggtctcatcgtggcacgatggtgctcttgcggataaaaataaaacgtatttttgggagcagatttgt 53896570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 881 - 1003
Target Start/End: Original strand, 25388655 - 25388781
Alignment:
Q  881 gtggcacgatggaggttttagttttttgggcaaggcactgg-aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat 977  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||    
T  25388655 gtggcacgatggaggttttagttttttgggcaaggcactggaaaaatcgtggcacgatggggtctcatcgtggcacgatggtgcgctggcagataaaaat 25388754  T
Q  978 -aaacgtatttttgggagcagatttgt 1003  Q
     |||| |||||||||||||||||||||    
T  25388755 aaaacatatttttgggagcagatttgt 25388781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 824 - 1003
Target Start/End: Complemental strand, 6064006 - 6063822
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactg-g 921  Q
    ||||||| |||||||||| |||||||| | |||||||||||||||| ||   ||||| ||||||| ||||||||||||||||||||||||||||||||      
T  6064006 tgtgagaattaacttaaaatcaggtttatgcagaatcgtggcacgatggcaaggcaacgtggcacaatggaggttttagttttttgggcaaggcactgaa 6063907  T
Q  922 aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttgt 1003  Q
    |||||||| ||||||||||||| |||||| |||||||||||  ||||||||||||||| |||| |||||||||| ||||||||||    
T  6063906 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtggactggcggataaaaataaaacatatttttgggtgcagatttgt 6063822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 824 - 1003
Target Start/End: Complemental strand, 22114842 - 22114657
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    |||||||||||||||||| ||||||||||  ||||||||||||||| |||||||||| |||||||||||||||||| |||||||  |||||||||||||     
T  22114842 tgtgagagttaacttaaaatcaggtttctgtagaatcgtggcacgatggttgggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 22114743  T
Q  922 aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcg--gataaaaataaacgtatttttgggagcagatttgt 1003  Q
    ||||| || ||||||||||||| |||||| ||||||||||||| |||||  ||  || | ||||||||||||||| ||||||||||    
T  22114742 aaaattgtggcacgatggggtcgcatcgtggcacgatggtgcgatggcggcgaataacagaaacgtatttttgggtgcagatttgt 22114657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 840 - 1003
Target Start/End: Original strand, 5899476 - 5899643
Alignment:
Q  840 aatcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg-aaaatcgt-gcacgatg 937  Q
    |||||||||||| || |||| ||||||||  |  |||||| ||||||||||||| ||||||||||||| ||||||||||||| |||||| | ||||||||    
T  5899476 aatcaggtttctgcataatcatggcacgattgaagggcaacgtggcacgatggatgttttagttttttaggcaaggcactggaaaaatcatggcacgatg 5899575  T
Q  938 gggtctcatcgt-gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttgt 1003  Q
    ||||| |||||| |||||||||||||||||| ||||||||| |||||||||||||||  |||||||||    
T  5899576 gggtcgcatcgtggcacgatggtgcgctggcagataaaaataaaacgtatttttgggtacagatttgt 5899643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 824 - 1003
Target Start/End: Original strand, 5885983 - 5886168
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaat-gtggcacgatggaggttttagttttttgggcaaggcactgg 921  Q
    |||||||||||||||||| | |||||| ||||||||||||||||||  |  | ||||  ||||||||||||| ||||||||||||| ||||||| |||||    
T  5885983 tgtgagagttaacttaaaattaggtttttacagaatcgtggcacgattgaagcgcaaacgtggcacgatggatgttttagttttttaggcaaggtactgg 5886082  T
Q  922 -aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttgt 1003  Q
     |||||||| ||||||||||||| |||||| | |||||||||||||||| ||||||||| ||||||||||||||| ||| ||||||    
T  5886083 aaaaatcgtggcacgatggggtcgcatcgtggtacgatggtgcgctggcagataaaaataaaacgtatttttgggtgcaaatttgt 5886168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 824 - 1003
Target Start/End: Complemental strand, 18099707 - 18099522
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacga-tggaggttttagttttttgggcaaggcactgg 921  Q
    |||||||||||||||||| |||||||||| || ||||||||||||| || ||||||| ||||||||| ||||||||| || ||||  |||||| ||||||    
T  18099707 tgtgagagttaacttaaaatcaggtttctgcaaaatcgtggcacgatggctgggcaacgtggcacgattggaggtttcag-ttttgaggcaagacactgg 18099609  T
Q  922 -aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat--aaacgtatttttgggagcagatttgt 1003  Q
     |||||||| ||||||||||||| |||||| ||||||||||||||||||||  || |||  ||||||||||||||| ||||||||||    
T  18099608 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcggcgaacaatagaaacgtatttttgggtgcagatttgt 18099522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 823 - 925
Target Start/End: Original strand, 35777162 - 35777265
Alignment:
Q  823 ctgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg 921  Q
    ||||||||||||||||||| | || ||||| ||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  35777162 ctgtgagagttaacttaaaattagatttctgcagaatcgtggcacgacagctgggcaacgtggcacgatggaggttttagttttttgggcaaggcactgg 35777261  T
Q  922 aaaa 925  Q
    ||||    
T  35777262 aaaa 35777265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 38394259 - 38394179
Alignment:
Q  8 gaaacaacgctcggcagtgcgtatgtctctacgcatgagccggattagtcacccaccagtagtgggtcatagaccggtgtg 88  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  38394259 gaaacaacgctcggcagtgcgtatgtttctacgcatgagccggattagtcacccaccagtggtgggtcagagaccggtgtg 38394179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 824 - 908
Target Start/End: Complemental strand, 7606963 - 7606878
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttg 908  Q
    |||||||||||||||||| |||||||||| |||||||||| ||||| || ||||||| |||||||||||||||||| |||||||||    
T  7606963 tgtgagagttaacttaaaatcaggtttctgcagaatcgtgacacgatggctgggcaacgtggcacgatggaggtttcagttttttg 7606878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 825 - 967
Target Start/End: Original strand, 5191374 - 5191520
Alignment:
Q  825 gtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacga-tggaggttttagttttttgggcaaggcactgg- 921  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||||  | ||||||  ||||||||| ||||||||| || ||||  ||||||| |||||     
T  5191374 gtgagagttaacttaaaatcagatttctgcagaatcgtggcacgattgctgggcatcgtggcacgattggaggtttcag-ttttgaggcaaggtactgga 5191472  T
Q  922 aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggc 967  Q
    |||||||| |||||||||| ||||||||| ||||||||||||||||||    
T  5191473 aaaatcgtggcacgatgggatctcatcgtggcacgatggtgcgctggc 5191520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 880 - 924
Target Start/End: Complemental strand, 6066255 - 6066211
Alignment:
Q  880 tgtggcacgatggaggttttagttttttgggcaaggcactggaaa 924  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  6066255 tgtggcacgatggaggttttagttttttgggcaaggcactggaaa 6066211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 824 - 905
Target Start/End: Complemental strand, 18097422 - 18097339
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacga-tggaggttttagtttt 905  Q
    |||||||||||||||||| |||||||||| || ||||||||||||| || ||||||| ||||||||| ||||||||| ||||||    
T  18097422 tgtgagagttaacttaaaatcaggtttctgcaaaatcgtggcacgatggctgggcaacgtggcacgattggaggtttcagtttt 18097339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 824 - 925
Target Start/End: Original strand, 38889757 - 38889860
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggttt-ctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg 921  Q
    |||||||||||||||||| | |||||| || ||||||||||| |||| ||   ||||| |||||||||||||||||| |||||||| ||||||||| |||    
T  38889757 tgtgagagttaacttaaaattaggttttctgcagaatcgtggtacgatggcaaggcaacgtggcacgatggaggtttcagttttttaggcaaggcattgg 38889856  T
Q  922 aaaa 925  Q
    ||||    
T  38889857 aaaa 38889860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 950 - 1003
Target Start/End: Complemental strand, 6066203 - 6066149
Alignment:
Q  950 gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttgt 1003  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  6066203 gcacgatggtgcgctggcggataaaaataaaatgtatttttgggagcagatttgt 6066149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 855 - 925
Target Start/End: Original strand, 11162923 - 11162993
Alignment:
Q  855 gaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactggaaaa 925  Q
    ||||||||||||||  | ||||||| |||||||||||||||||| |||||||  |||||||||||||||||    
T  11162923 gaatcgtggcacgattgctgggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactggaaaa 11162993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 882 - 1003
Target Start/End: Complemental strand, 10956505 - 10956379
Alignment:
Q  882 tggcacgat-ggaggttttagttttttgggcaaggcactgg-aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggc--ggataaaa 975  Q
    ||||||||| |||||||| ||||||  |||||||||||||| |||||||| ||||||||||||| |||||| ||||||||||||||||||   ||  ||     
T  10956505 tggcacgattggaggtttcagttttg-gggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcagcgaataac 10956407  T
Q  976 ataaacgtatttttgggagcagatttgt 1003  Q
    |||||||||||||| || ||||||||||    
T  10956406 ataaacgtatttttaggtgcagatttgt 10956379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 930 - 1003
Target Start/End: Original strand, 3859357 - 3859433
Alignment:
Q  930 gcacgatggggtctcatcgtg-cacgatggtgcgctggcggataaaaata--aacgtatttttgggagcagatttgt 1003  Q
    ||||||||||||| ||||||| |||||||||||||||||||  || ||||  |||||||||||||| ||||||||||    
T  3859357 gcacgatggggtcacatcgtggcacgatggtgcgctggcggcgaataatataaacgtatttttgggtgcagatttgt 3859433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 819 - 868
Target Start/End: Complemental strand, 6066296 - 6066246
Alignment:
Q  819 atgactgtgagagttaactt-aaatcaggtttctacagaatcgtggcacga 868  Q
    |||||||||||||||||||| ||||||||||||| |||||| |||||||||    
T  6066296 atgactgtgagagttaacttaaaatcaggtttctgcagaattgtggcacga 6066246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 855 - 925
Target Start/End: Original strand, 11170177 - 11170247
Alignment:
Q  855 gaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactggaaaa 925  Q
    |||||||||||||   | ||||||| ||||||||||||||||||  ||||||  |||||||||||||||||    
T  11170177 gaatcgtggcacggttgctgggcaacgtggcacgatggaggtttcggtttttgaggcaaggcactggaaaa 11170247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 824 - 868
Target Start/End: Original strand, 25388618 - 25388663
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacga 868  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||    
T  25388618 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacga 25388663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 54237485 - 54237538
Alignment:
Q  22 cagtgcgtatgtctctacgcatgagccggattagtcacccaccagtagtgggtc 75  Q
    ||||||| ||||||||||||||||||||||| ||||  |||||| |||||||||    
T  54237485 cagtgcgcatgtctctacgcatgagccggataagtcgtccaccattagtgggtc 54237538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 57
Target Start/End: Original strand, 3755607 - 3755642
Alignment:
Q  22 cagtgcgtatgtctctacgcatgagccggattagtc 57  Q
    ||||||| ||||||||||||||||||||||||||||    
T  3755607 cagtgcgcatgtctctacgcatgagccggattagtc 3755642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 29127956 - 29127998
Alignment:
Q  22 cagtgcgtatgtctctacgcatgagccggattagtcacccacc 64  Q
    ||||||| ||| |||||||||||||||||||||||| ||||||    
T  29127956 cagtgcgcatgcctctacgcatgagccggattagtcgcccacc 29127998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 47219166 - 47219216
Alignment:
Q  8 gaaacaacgctcggc-agtgcgtatgtctctacgcatgagccggattagtc 57  Q
    ||||||||||| ||| |||||| ||| ||||||||||||||||||||||||    
T  47219166 gaaacaacgcttggctagtgcgcatgcctctacgcatgagccggattagtc 47219216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 824 - 868
Target Start/End: Original strand, 3859317 - 3859362
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacga 868  Q
    |||||||||||||||||| |||||||||| || |||||||||||||    
T  3859317 tgtgagagttaacttaaaatcaggtttctgcataatcgtggcacga 3859362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 875 - 950
Target Start/End: Complemental strand, 10085557 - 10085481
Alignment:
Q  875 ggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg-aaaatcgt-gcacgatggggtctcatcgtg 950  Q
    ||||| |||||||||||||||||| || ||||  ||||||||||||| |||||||| |||||||||| || |||||||    
T  10085557 ggcaacgtggcacgatggaggtttcag-ttttgaggcaaggcactggaaaaatcgtggcacgatgggatcacatcgtg 10085481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 875 - 950
Target Start/End: Complemental strand, 10192477 - 10192401
Alignment:
Q  875 ggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg-aaaatcgt-gcacgatggggtctcatcgtg 950  Q
    ||||| |||||||||||||||||| || ||||  ||||||||||||| |||||||| |||||||||| || |||||||    
T  10192477 ggcaacgtggcacgatggaggtttcag-ttttgaggcaaggcactggaaaaatcgtggcacgatgggatcgcatcgtg 10192401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 824 - 898
Target Start/End: Original strand, 32218836 - 32218912
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaa-tcgtggcacgacggttgggcaatgtggcacga-tggaggttt 898  Q
    |||||||||||||||||| ||||||| || ||||| ||||||||||| | |||||||| ||||||||| |||||||||    
T  32218836 tgtgagagttaacttaaaatcaggtt-ctgcagaaatcgtggcacgatgattgggcaacgtggcacgattggaggttt 32218912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 824 - 922
Target Start/End: Complemental strand, 32264580 - 32264481
Alignment:
Q  824 tgtgagagttaactt-aaatcaggtttctacag-aatcgtggcacgacggttgggcaatgtggcacga-tggaggttttagttttttgggcaaggcactg 920  Q
    ||||||||||||||| ||||||||||| | ||| ||||||||||||| || |||| || ||||||||| ||||||||| |||||||  |||||| |||||    
T  32264580 tgtgagagttaacttaaaatcaggttt-tgcagaaatcgtggcacgatggctggg-aacgtggcacgattggaggtttcagtttttgaggcaagtcactg 32264483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 49021273 - 49021220
Alignment:
Q  22 cagtgcgtatgtctctacgcatgagccggattagtcacccaccagtagtgggtc 75  Q
    ||||||| ||| ||||||||||||||||||||||||  |||||| | |||||||    
T  49021273 cagtgcgcatgcctctacgcatgagccggattagtcgtccaccattggtgggtc 49021220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 134; Significance: 3e-69; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 824 - 1011
Target Start/End: Complemental strand, 1047503 - 1047310
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||     
T  1047503 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacggctgggcaacgtggcacgatggaggttttagttttttgggcaaggcactgga 1047404  T
Q  922 aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttg-tacagtttt 1011  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  1047403 aaaatcgtggcacgatggggtctcatcgtggcacgatggtgcgctggcggataaaaataaaacgtatttttgggagcagatttgttacagtttt 1047310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 824 - 1027
Target Start/End: Complemental strand, 9027687 - 9027477
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    |||||||||||||||||| |||||||||| || |||||||||||||||| |||||   | |||||||||||||||||||||||||||||||||||||||     
T  9027687 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacggctgggcttcgcggcacgatggaggttttagttttttgggcaaggcactgga 9027588  T
Q  922 aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttg-tacagtttttgttac 1017  Q
    |||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||    
T  9027587 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcggataaaaataaaacatatttttgggagcagatttgttacagtttttgttac 9027488  T
Q  1018 -gatttgttac 1027  Q
     ||||||||||    
T  9027487 agatttgttac 9027477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 7e-58
Query Start/End: Original strand, 824 - 1027
Target Start/End: Original strand, 22136878 - 22137088
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    |||||||||||||||||| |||||||||| || |||||||||||||| | |||||   | |||||||||||||||||||||||||||||||||||||||     
T  22136878 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacagctgggcttcgcggcacgatggaggttttagttttttgggcaaggcactgga 22136977  T
Q  922 aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttg-tacagtttttgttac 1017  Q
    |||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||    
T  22136978 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcggataaaaataaaacatatttttgggagcagatttgttacagtttttgttac 22137077  T
Q  1018 -gatttgttac 1027  Q
     ||||||||||    
T  22137078 agatttgttac 22137088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 115; E-Value: 7e-58
Query Start/End: Original strand, 824 - 1027
Target Start/End: Original strand, 40551905 - 40552115
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    |||||||||||||||||| |||||||||| || |||||||||||||| | |||||   | |||||||||||||||||||||||||||||||||||||||     
T  40551905 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacagctgggcttcgcggcacgatggaggttttagttttttgggcaaggcactgga 40552004  T
Q  922 aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttg-tacagtttttgttac 1017  Q
    |||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||    
T  40552005 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcggataaaaataaaacatatttttgggagcagatttgttacagtttttgttac 40552104  T
Q  1018 -gatttgttac 1027  Q
     ||||||||||    
T  40552105 agatttgttac 40552115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 824 - 1017
Target Start/End: Original strand, 2935070 - 2935269
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    |||||||||||||||||| |||||||||| || |||||||||||||||| |||||   | |||||||||||||||||||||||||||||||||||||||     
T  2935070 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacggctgggcttcgcggcacgatggaggttttagttttttgggcaaggcactgga 2935169  T
Q  922 aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttg-tacagtttttgttac 1017  Q
    |||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| |||| |||||||| ||||||||||| |||||||||||||||    
T  2935170 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcggataaaaataaaacatatttttgagagcagatttgttacagtttttgttac 2935269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 824 - 1027
Target Start/End: Original strand, 22107867 - 22108077
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    |||||||||||||||||| |||||||||| || |||||||||||||| | |||||   | ||||||||| |||||||||||||||||||||||||||||     
T  22107867 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacagctgggcttcgcggcacgatgcaggttttagttttttgggcaaggcactgga 22107966  T
Q  922 aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttg-tacagtttttgttac 1017  Q
    |||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||    
T  22107967 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcggataaaaataaaacatatttttgggagcagatttgttacagtttttgttac 22108066  T
Q  1018 -gatttgttac 1027  Q
     ||||||||||    
T  22108067 agatttgttac 22108077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 824 - 1027
Target Start/End: Original strand, 40549627 - 40549837
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    |||||||||||||||||| |||||||||| || |||||||||||||| | |||||   | ||||||||| |||||||||||||||||||||||||||||     
T  40549627 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacagctgggcttcgcggcacgatgcaggttttagttttttgggcaaggcactgga 40549726  T
Q  922 aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttg-tacagtttttgttac 1017  Q
    |||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||    
T  40549727 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcggataaaaataaaacatatttttgggagcagatttgttacagtttttgttac 40549826  T
Q  1018 -gatttgttac 1027  Q
     ||||||||||    
T  40549827 agatttgttac 40549837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 822 - 925
Target Start/End: Complemental strand, 40837263 - 40837159
Alignment:
Q  822 actgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactg 920  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||| ||| || ||| |||||||||||||||||| |||||||| ||||||||||||    
T  40837263 actgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgatggtcggacaacgtggcacgatggaggtttcagttttttaggcaaggcactg 40837164  T
Q  921 gaaaa 925  Q
    |||||    
T  40837163 gaaaa 40837159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 822 - 967
Target Start/End: Original strand, 3878320 - 3878469
Alignment:
Q  822 actgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacga-tggaggttttagttttttgggcaaggcact 919  Q
    |||||||||||||||||||| |||| ||||| |||||||||||||||| || ||||||| ||||||||| ||||||||| |   |||  ||||| |||||    
T  3878320 actgtgagagttaacttaaaatcagatttctgcagaatcgtggcacgatggctgggcaacgtggcacgattggaggtttca-agtttgaggcaaagcact 3878418  T
Q  920 gg-aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggc 967  Q
    || |||||||| ||||||||||||| |||||| |||||||||| |||||||    
T  3878419 ggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtacgctggc 3878469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 824 - 905
Target Start/End: Original strand, 26804345 - 26804428
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacga-tggaggttttagtttt 905  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| || ||||||| |||| |||| ||||||||| ||||||    
T  26804345 tgtgagagttaacttaaaatcaggtttctacagaatcgtggcacgatggctgggcaacgtggtacgattggaggtttcagtttt 26804428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 824 - 1003
Target Start/End: Complemental strand, 27306767 - 27306583
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacga-tggaggttttagttttttgggcaaggcactgg 921  Q
    |||||||||||||||||| | |||||| | || ||||||||||||| || ||| ||| ||||||||| ||||||||| || ||||  |||||| || |||    
T  27306767 tgtgagagttaacttaaaataaggttt-tgcaaaatcgtggcacgatggctggacaacgtggcacgattggaggtttcag-ttttgaggcaagtcattgg 27306670  T
Q  922 -aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggc--ggataaaaataaacgtatttttgggagcagatttgt 1003  Q
     |||||||| ||||||||||||| | |||| ||||||||||||||| ||   ||  || | ||||||||||||||| ||||||||||    
T  27306669 aaaaatcgtggcacgatggggtcgcttcgtggcacgatggtgcgctagcagcgaataacagaaacgtatttttgggtgcagatttgt 27306583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 365180 - 365233
Alignment:
Q  22 cagtgcgtatgtctctacgcatgagccggattagtcacccaccagtagtgggtc 75  Q
    ||||||| ||| ||||||||||||||| ||||||| |||||||||| |||||||    
T  365180 cagtgcgcatgcctctacgcatgagcctgattagtgacccaccagtggtgggtc 365233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 860 - 967
Target Start/End: Original strand, 25542317 - 25542427
Alignment:
Q  860 gtggcacgacggttgggcaatgtggcacgat-ggaggttttagttttttgggcaaggcactggaaaa-tcgtg-cacgatggggtctcatcgtg-cacga 955  Q
    |||||||||  | ||||||| |||||||||| |||||||| ||||||  || ||||||||| ||||| ||||| ||||||||| || ||||||| |||||    
T  25542317 gtggcacgattgctgggcaacgtggcacgattggaggtttcagttttaagg-caaggcacttgaaaaatcgtggcacgatgggatcgcatcgtggcacga 25542415  T
Q  956 tggtgcgctggc 967  Q
    ||||||||||||    
T  25542416 tggtgcgctggc 25542427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 38578949 - 38578894
Alignment:
Q  10 aacaacgctcggc-agtgcgtatgtctctacgcatgagccggattagtcacccacc 64  Q
    ||||||||| ||| |||||| ||| |||||||||||||||||||||||| ||||||    
T  38578949 aacaacgcttggccagtgcgcatgcctctacgcatgagccggattagtcgcccacc 38578894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 16802163 - 16802216
Alignment:
Q  22 cagtgcgtatgtctctacgcatgagccggattagtcacccaccagtagtgggtc 75  Q
    ||||||||||| ||||||||| |||||||||||||| | ||||| | |||||||    
T  16802163 cagtgcgtatgcctctacgcacgagccggattagtcgctcaccattggtgggtc 16802216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 48804723 - 48804776
Alignment:
Q  22 cagtgcgtatgtctctacgcatgagccggattagtcacccaccagtagtgggtc 75  Q
    ||||||| ||| ||||||||||||||||||||||||  |||||| | |||||||    
T  48804723 cagtgcgcatgcctctacgcatgagccggattagtcgtccaccattggtgggtc 48804776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 134; Significance: 3e-69; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 824 - 1011
Target Start/End: Complemental strand, 16932360 - 16932167
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||     
T  16932360 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacggctgggcaacgtggcacgatggaggttttagttttttgggcaaggcactgga 16932261  T
Q  922 aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttg-tacagtttt 1011  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  16932260 aaaatcgtggcacgatggggtctcatcgtggcacgatggtgcgctggcggataaaaataaaacgtatttttgggagcagatttgttacagtttt 16932167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 5e-62
Query Start/End: Original strand, 824 - 1011
Target Start/End: Complemental strand, 16934714 - 16934521
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||     
T  16934714 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacggctgggcaacatggcacgatggaggttttagttttttgggcaaggcactgga 16934615  T
Q  922 aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttg-tacagtttt 1011  Q
    |||||||| |||||||||||||||||| | |||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||    
T  16934614 aaaatcgtggcacgatggggtctcatcctggcacgatggtgcgctgtcggataaaaataaaacgtatttttgggagcagatttgttacagtttt 16934521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 824 - 1011
Target Start/End: Complemental strand, 22783317 - 22783124
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    |||||||||||||||||| |||||||||| ||||||||||| ||||  | ||||||| |||||||||||||||||||||||||||||||||||||||||     
T  22783317 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggtacgatagctgggcaacgtggcacgatggaggttttagttttttgggcaaggcactgga 22783218  T
Q  922 aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttg-tacagtttt 1011  Q
    |||||| | |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  22783217 aaaatcatggcacgatggggtctcatcgtggcacgatggtgcgctggcggataaaaataaaacgtatttttgggagcagatttgttacagtttt 22783124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 824 - 1011
Target Start/End: Complemental strand, 22780952 - 22780759
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    |||||||||||||||||| |||||||||| ||||||||||| ||||  | ||||||| |||||||||||||||||||||||||||||||||||||||||     
T  22780952 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggtacgatagctgggcaacgtggcacgatggaggttttagttttttgggcaaggcactgga 22780853  T
Q  922 aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttg-tacagtttt 1011  Q
    |||||| | ||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  22780852 aaaatcatggcacgatggggtctcattgtggcacgatggtgcgctggcggataaaaataaaacgtatttttgggagcagatttgttacagtttt 22780759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 824 - 1003
Target Start/End: Complemental strand, 9177035 - 9176850
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||     
T  9177035 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacggttaggcaacgtggcacgatggaggttttagttttttaggcaaggcactgga 9176936  T
Q  922 aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggc--ggataaaaataaacgtatttttgggagcagatttgt 1003  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||  ||| ||| | |||| |||||||||| ||||||||||    
T  9176935 aaaatcgtggcacgatggggtctcatcgtggcacgatggtgcgctggcagggaaaaacagaaacatatttttgggtgcagatttgt 9176850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 824 - 1012
Target Start/End: Complemental strand, 9174684 - 9174490
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    |||||||||||||||||| ||||||| || ||||||||||||||||||| | ||||| || ||||||||||||||||||||| || |||||||||||||     
T  9174684 tgtgagagttaacttaaaatcaggtt-ctgcagaatcgtggcacgacggctaggcaacgtagcacgatggaggttttagtttattaggcaaggcactgga 9174586  T
Q  922 aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggc--ggataaaaataaacgtatttttgggagcagatttg-tacagttttt 1012  Q
    |||||| | |||||||||||||||||||| ||||||||||||||||||  ||| ||| | |||| |||||||||| ||||||||| ||||||||||    
T  9174585 aaaatcatggcacgatggggtctcatcgtggcacgatggtgcgctggcagggaaaaacagaaacatatttttgggtgcagatttgttacagttttt 9174490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 824 - 1003
Target Start/End: Complemental strand, 11006781 - 11006595
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttc-tacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg 921  Q
    |||||||||||||||||| ||||||||  | ||||||||||||||||  | ||||||| |||||||||||||||||| | |||||| |||||||||||||    
T  11006781 tgtgagagttaacttaaaatcaggttttatgcagaatcgtggcacgatcgctgggcaacgtggcacgatggaggtttcaattttttaggcaaggcactgg 11006682  T
Q  922 -aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcgg--ataaaaataaacgtatttttgggagcagatttgt 1003  Q
     |||||||| ||||||||||||| |||||| |||||||||||||||||| |  | ||| | |||| |||||||||| ||||||||||    
T  11006681 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcagcaaaaaacagaaacatatttttgggtgcagatttgt 11006595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 823 - 925
Target Start/End: Original strand, 7941132 - 7941236
Alignment:
Q  823 ctgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttg-ggcaaggcactg 920  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||| || ||||||| |||||||||||||||||| ||||||||| ||||||||||||    
T  7941132 ctgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgatggctgggcaacgtggcacgatggaggtttcagttttttgaggcaaggcactg 7941231  T
Q  921 gaaaa 925  Q
    |||||    
T  7941232 gaaaa 7941236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 826 - 967
Target Start/End: Original strand, 51015042 - 51015187
Alignment:
Q  826 tgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg-aa 923  Q
    |||||||||||||||| |||| ||||| ||||||||||||| || ||   ||||| |||||||||||||||||| |||||||| ||||||||||||| ||    
T  51015042 tgagagttaacttaaaatcagatttctgcagaatcgtggcatgatggcaaggcaacgtggcacgatggaggtttcagttttttaggcaaggcactggaaa 51015141  T
Q  924 aatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggc 967  Q
    ||| || ||||||||||||| |||||| ||||||||||||||||||    
T  51015142 aattgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 51015187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 823 - 925
Target Start/End: Original strand, 11434768 - 11434872
Alignment:
Q  823 ctgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttg-ggcaaggcactg 920  Q
    ||||||||||||||||||| |||||||||| ||||||||||| |||| || ||||||| |||||||||||||||||| ||||||||| |||||| |||||    
T  11434768 ctgtgagagttaacttaaaatcaggtttctgcagaatcgtggtacgatggctgggcaacgtggcacgatggaggtttcagttttttgaggcaagacactg 11434867  T
Q  921 gaaaa 925  Q
    |||||    
T  11434868 gaaaa 11434872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 823 - 1003
Target Start/End: Complemental strand, 37089915 - 37089728
Alignment:
Q  823 ctgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatg-gaggttttagttttttgggcaaggcactg 920  Q
    |||| |||||||||||||| |||| ||||| |||||||||||||||| ||   ||||| ||||||||||| || ||||||||||||| ||  ||||||||    
T  37089915 ctgtaagagttaacttaaaatcagatttctgcagaatcgtggcacgatggcaaggcaacgtggcacgatgagatgttttagttttttaggtgaggcactg 37089816  T
Q  921 g-aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcg--gataaaaataaacgtatttttgggagcagatttgt 1003  Q
    | |||||||| ||||||||||||| |||||| |||||||||||||||||||  ||  || | |||||||||||| || ||||||||||    
T  37089815 gaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcggcgaataacagaaacgtatttttaggtgcagatttgt 37089728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 824 - 1003
Target Start/End: Complemental strand, 3825112 - 3824927
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacga-tggaggttttagttttttgggcaaggcactgg 921  Q
    |||||||||||||||||| |||||||||| |||||||||| ||||| || |||||||  |||||||| ||||||||| || ||||  ||||| |||||||    
T  3825112 tgtgagagttaacttaaaatcaggtttctgcagaatcgtgacacgatggctgggcaacatggcacgattggaggtttcag-ttttgaggcaaagcactgg 3825014  T
Q  922 -aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcg--gataaaaataaacgtatttttgggagcagatttgt 1003  Q
     |||||| | |||| |||||||| |||||| ||||||||||||| |||||  ||  || | ||||||||||||||| ||||||||||    
T  3825013 aaaaatcatggcacaatggggtcgcatcgtggcacgatggtgcgttggcgacgaataacagaaacgtatttttgggtgcagatttgt 3824927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 824 - 967
Target Start/End: Complemental strand, 5638006 - 5637860
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    |||||||||||||||||| |||||||||| | ||||||||||||||  | ||||||| |||||||||||||||||| || ||||  |||||||||||||     
T  5638006 tgtgagagttaacttaaaatcaggtttctgcggaatcgtggcacgattgctgggcaacgtggcacgatggaggtttcag-ttttgaggcaaggcactgga 5637908  T
Q  922 aaaatcgtg-cacgatggggtctcatcgt-gcacgatggtgcgctggc 967  Q
    |||||| || ||||||||| || |||||| ||| ||||||| ||||||    
T  5637907 aaaatcatgtcacgatgggatcgcatcgtggcatgatggtgagctggc 5637860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 824 - 1003
Target Start/End: Complemental strand, 36920125 - 36919941
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacga-tggaggttttagttttttgggcaaggcactgg 921  Q
    |||||||||||||||||| ||||||| || || ||||||||||||| || ||||||| ||||||||| ||||||||| |  ||||  |||||| ||||||    
T  36920125 tgtgagagttaacttaaaatcaggtt-ctgcaaaatcgtggcacgatggctgggcaacgtggcacgattggaggtttca-attttgaggcaagtcactgg 36920028  T
Q  922 -aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaa--ataaacgtatttttgggagcagatttgt 1003  Q
     |||||||| ||||||||||||| |||||| |||||||||||||||||| |  || |  | ||||||||||||||| ||||||||||    
T  36920027 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcagcgaatagtagaaacgtatttttgggtgcagatttgt 36919941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 826 - 967
Target Start/End: Complemental strand, 22803270 - 22803125
Alignment:
Q  826 tgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgat-ggaggttttagttttttgggcaaggcactggaa 923  Q
    |||||||||||||||| |||  |||||| |||||||||| |||| || ||||||| |||||||||| |||||||| ||||||  ||  ||||||||||||    
T  22803270 tgagagttaacttaaaatcaaatttctatagaatcgtggtacgatggctgggcaacgtggcacgattggaggtttcagttttgagga-aaggcactggaa 22803172  T
Q  924 aa-tcgtg-cacgatggggtctcatcgtg-cacgatggtgcgctggc 967  Q
    || ||||| | |||||||||| ||||||| |||||||||||||||||    
T  22803171 aaatcgtggctcgatggggtcgcatcgtggcacgatggtgcgctggc 22803125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 824 - 1003
Target Start/End: Original strand, 18846923 - 18847110
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggttt--ctacagaatcgtggcacgacggttgggcaatgtggcacga-tggaggttttagttttttgggcaaggcact 919  Q
    |||||||||||||||||| |||| |||  || ||||||||||||||||  |||||| |  ||||||||| ||||||||| || ||||  ||||||| |||    
T  18846923 tgtgagagttaacttaaaatcagatttttctgcagaatcgtggcacgattgttgggaatcgtggcacgattggaggtttcag-ttttgaggcaaggtact 18847021  T
Q  920 gg-aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggc--ggataaaaataaacgtatttttgggagcagatttgt 1003  Q
    || |||||||| | ||||||||||| |||||| ||||||||||||||| ||  ||| ||| | |||| |||||||||| ||||||||||    
T  18847022 ggaaaaatcgtggtacgatggggtcgcatcgtggcacgatggtgcgctcgcggggaaaaacagaaacatatttttgggtgcagatttgt 18847110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 855 - 967
Target Start/End: Complemental strand, 31850106 - 31849991
Alignment:
Q  855 gaatcgtggcacgacggttgggcaatgtggcacgat-ggaggttttagttttttgggcaaggcactgg-aaaatcgt-gcacgatggggtctcatcgt-g 950  Q
    |||| |||||||||  | ||||||| |||||||||| |||||||| ||||||  |||||||||||||| |||||| | ||||||||||||| |||||| |    
T  31850106 gaattgtggcacgattgctgggcaacgtggcacgattggaggtttcagttttg-gggcaaggcactggaaaaatcttggcacgatggggtcgcatcgtgg 31850008  T
Q  951 cacgatggtgcgctggc 967  Q
    |||||||||||||||||    
T  31850007 cacgatggtgcgctggc 31849991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 855 - 967
Target Start/End: Complemental strand, 22044898 - 22044781
Alignment:
Q  855 gaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagtttttt--gggcaaggcactgg-aaaatcgt-gcacgatggggtctcatcgt- 949  Q
    ||||||||||||||  |  |||||| |||||||||||||||||| | ||||||   ||||||||||||| |||||||| |||||||||| || ||||||     
T  22044898 gaatcgtggcacgattgaagggcaacgtggcacgatggaggtttcattttttttgaggcaaggcactggaaaaatcgtggcacgatgggatcgcatcgtg 22044799  T
Q  950 gcacgatggtgcgctggc 967  Q
    ||||||||||| ||||||    
T  22044798 gcacgatggtgtgctggc 22044781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 881 - 1003
Target Start/End: Complemental strand, 11009074 - 11008946
Alignment:
Q  881 gtggcacgatggaggttttagttttttg-ggcaaggcactgg-aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcgg--ataaa 974  Q
    ||||||| |||||||||| | ||||||  ||||||||||||| |||||||| ||||||||||||| |||||| |||||||||||| ||||| |  | |||    
T  11009074 gtggcacaatggaggtttcaatttttttaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcactggcagcaaaaaa 11008975  T
Q  975 aataaacgtatttttgggagcagatttgt 1003  Q
     | |||| |||||||||| ||||||||||    
T  11008974 cagaaacatatttttgggtgcagatttgt 11008946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 43468400 - 43468453
Alignment:
Q  33 tctctacgcatgagccggattagtcacccaccagtagtgggtcatagaccggtg 86  Q
    ||||||||||||||||||||||||| ||||||||| |||||||  |||||||||    
T  43468400 tctctacgcatgagccggattagtcgcccaccagtggtgggtcggagaccggtg 43468453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 846 - 905
Target Start/End: Complemental strand, 22801356 - 22801296
Alignment:
Q  846 gtttctacagaatcgtggcacgacggttgggcaatgtggcacga-tggaggttttagtttt 905  Q
    ||||||||||||||||||||||| |||||||||| ||| ||||| ||||||||| ||||||    
T  22801356 gtttctacagaatcgtggcacgatggttgggcaacgtgacacgattggaggtttcagtttt 22801296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 824 - 961
Target Start/End: Complemental strand, 36922033 - 36921893
Alignment:
Q  824 tgtgagagttaactt-aaatcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacga-tggaggttttagttttttgggcaaggcactgg 921  Q
    ||||||||||||||| |||||||| |||| || |||||||| |||| || |||||||  |||||||| ||||||||| || ||||  |||||| ||||||    
T  36922033 tgtgagagttaacttaaaatcagg-ttctgcaaaatcgtggtacgatggctgggcaacatggcacgattggaggtttcag-ttttgaggcaagtcactgg 36921936  T
Q  922 -aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgc 961  Q
     |||||||| ||||||||||||| ||| || ||||||||||||    
T  36921935 aaaaatcgtggcacgatggggtcgcattgtggcacgatggtgc 36921893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 7246728 - 7246673
Alignment:
Q  10 aacaacgctcggc-agtgcgtatgtctctacgcatgagccggattagtcacccacc 64  Q
    ||||||||| ||| |||||| ||| |||||||||||||||||||||||| ||||||    
T  7246728 aacaacgcttggccagtgcgcatgcctctacgcatgagccggattagtcgcccacc 7246673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 57
Target Start/End: Original strand, 31588728 - 31588763
Alignment:
Q  22 cagtgcgtatgtctctacgcatgagccggattagtc 57  Q
    ||||||| ||||||||||||||||||||||||||||    
T  31588728 cagtgcgcatgtctctacgcatgagccggattagtc 31588763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 5472932 - 5472875
Alignment:
Q  8 gaaacaacgctcggc-agtgcgtatgtctctacgcatgagccggattagtcacccacc 64  Q
    ||||||||||| ||| |||||| ||| ||||||||| |||||||||||||| ||||||    
T  5472932 gaaacaacgcttggccagtgcgcatgcctctacgcacgagccggattagtcgcccacc 5472875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 8889062 - 8889099
Alignment:
Q  20 ggcagtgcgtatgtctctacgcatgagccggattagtc 57  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  8889062 ggcagtgcgcatggctctacgcatgagccggattagtc 8889099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 14077988 - 14078029
Alignment:
Q  22 cagtgcgtatgtctctacgcatgagccggattagtcacccac 63  Q
    ||||||| ||||||||||||| ||| ||||||||||||||||    
T  14077988 cagtgcgcatgtctctacgcacgagtcggattagtcacccac 14078029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 854 - 907
Target Start/End: Complemental strand, 22048544 - 22048491
Alignment:
Q  854 agaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagtttttt 907  Q
    |||||||||||||||  |  |||||| |||||||||||||||||| ||||||||    
T  22048544 agaatcgtggcacgattgaagggcaacgtggcacgatggaggtttcagtttttt 22048491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 50485997 - 50486038
Alignment:
Q  34 ctctacgcatgagccggattagtcacccaccagtagtgggtc 75  Q
    ||||||||| |||||||||||||| ||||||| |||||||||    
T  50485997 ctctacgcacgagccggattagtcgcccaccattagtgggtc 50486038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 3e-66; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 822 - 1027
Target Start/End: Complemental strand, 26068884 - 26068672
Alignment:
Q  822 actgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactg 920  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||   ||||| |||||| |||||||||||||||||||||||||||||||||    
T  26068884 actgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacggcaaggcaacgtggcatgatggaggttttagttttttgggcaaggcactg 26068785  T
Q  921 g-aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttg-tacagtttttgtt 1015  Q
    | |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||    
T  26068784 gaaaaatcgtggcacgatggggtctcatcgtggcacgatggtgcgctggcggataaaaataaaacgtatttttgggagcagatttgttaccgtttttgtt 26068685  T
Q  1016 ac-gatttgttac 1027  Q
    || ||||||||||    
T  26068684 acagatttgttac 26068672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 127; E-Value: 5e-65
Query Start/End: Original strand, 824 - 1027
Target Start/End: Original strand, 33310954 - 33311164
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||| |||||   |||||||||||||||||||||||||||||||||||||||||     
T  33310954 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacggctgggcttcgtggcacgatggaggttttagttttttgggcaaggcactgga 33311053  T
Q  922 aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttg-tacagtttttgttac 1017  Q
    |||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||    
T  33311054 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcggataaaaataaaacatatttttgggagcagatttgttacagtttttgttac 33311153  T
Q  1018 -gatttgttac 1027  Q
     ||||||||||    
T  33311154 agatttgttac 33311164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 824 - 1027
Target Start/End: Complemental strand, 26066611 - 26066401
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    |||||||||||||||||| ||||||||||  ||||||||||||||||||   ||||| ||||||||||||||||||||||| |||||||||||||||||     
T  26066611 tgtgagagttaacttaaaatcaggtttctgtagaatcgtggcacgacggcaaggcaacgtggcacgatggaggttttagttatttgggcaaggcactgga 26066512  T
Q  922 aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttg-tacagtttttgttac 1017  Q
    |||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  26066511 aaaatcgtggcacgatggggtctcatcgtggcacaatggtgcgctggcggataaaaataaaacgtatttttgggagcagatttgttacagtttttgttac 26066412  T
Q  1018 -gatttgttac 1027  Q
     ||||||||||    
T  26066411 agatttgttac 26066401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 824 - 1027
Target Start/End: Original strand, 33308685 - 33308895
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||| |||||   |||||||||||||||||||||||||||||||||||||||||     
T  33308685 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacggctgggcttcgtggcacgatggaggttttagttttttgggcaaggcactgga 33308784  T
Q  922 aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttg-tacagtttttgttac 1017  Q
    |||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||| ||||||||||    
T  33308785 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcggataaaaataaaacatatttttgggagcagatttgttacattttttgttac 33308884  T
Q  1018 -gatttgttac 1027  Q
     ||||||||||    
T  33308885 agatttgttac 33308895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 823 - 1027
Target Start/End: Complemental strand, 29755280 - 29755069
Alignment:
Q  823 ctgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg 921  Q
    ||||||||||||||||||| |||||||||| || |||||||||||||||| |||||   | |||||||||||||||||||||||||||||||||||||||    
T  29755280 ctgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacggctgggcttcgcggcacgatggaggttttagttttttgggcaaggcactgg 29755181  T
Q  922 -aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttg-tacagtttttgtta 1016  Q
     |||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||    
T  29755180 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcggataaaaataaaacatatttttgggagcagatttgttacagtttttgtta 29755081  T
Q  1017 c-gatttgttac 1027  Q
    | ||||||||||    
T  29755080 cagatttgttac 29755069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 822 - 965
Target Start/End: Complemental strand, 14507718 - 14507569
Alignment:
Q  822 actgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgg--gcaaggcac 918  Q
    |||||||||||||||||||| |||| ||||| |||||||||||||||| || ||||||| |||||||||||||||||| |||||||| |   ||||||||    
T  14507718 actgtgagagttaacttaaaatcagatttctgcagaatcgtggcacgatggctgggcaacgtggcacgatggaggtttcagtttttttgatacaaggcac 14507619  T
Q  919 tgg-aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctg 965  Q
    ||| ||||| || ||||||||||||| |||||| ||||||||||||||||    
T  14507618 tggaaaaatggtggcacgatggggtcgcatcgtggcacgatggtgcgctg 14507569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 855 - 969
Target Start/End: Complemental strand, 19227916 - 19227799
Alignment:
Q  855 gaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg-aaaatcgt-gcacgatggggtctcatcgt-gc 951  Q
    |||||||||||||| |||||||||| |||||| ||||||||||| | |||||  ||||||||||||| |||||||| ||||||||||||| |||||| ||    
T  19227916 gaatcgtggcacgatggttgggcaacgtggcatgatggaggtttcaatttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 19227817  T
Q  952 acgatggtgcgctggcgg 969  Q
    ||||||||||||||||||    
T  19227816 acgatggtgcgctggcgg 19227799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 855 - 965
Target Start/End: Original strand, 8995287 - 8995400
Alignment:
Q  855 gaatcgtggcacgacggttgggcaatgtggcacga-tggaggttttagttttttgggcaaggcactgg-aaaatcgt-gcacgatggggtctcatcgt-g 950  Q
    |||||||||||||| || ||||||| ||||||||| ||||||||| || ||||||||||||||||||| |||||||| ||||||||||||| |||||| |    
T  8995287 gaatcgtggcacgatggctgggcaacgtggcacgattggaggtttcag-tttttgggcaaggcactggaaaaatcgtggcacgatggggtcacatcgtgg 8995385  T
Q  951 cacgatggtgcgctg 965  Q
    |||||||||||||||    
T  8995386 cacgatggtgcgctg 8995400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 855 - 965
Target Start/End: Original strand, 9019734 - 9019847
Alignment:
Q  855 gaatcgtggcacgacggttgggcaatgtggcacga-tggaggttttagttttttgggcaaggcactgg-aaaatcgt-gcacgatggggtctcatcgt-g 950  Q
    |||||||||||||| || ||||||| ||||||||| ||||||||| || ||||||||||||||||||| |||||||| ||||||||||||| |||||| |    
T  9019734 gaatcgtggcacgatggctgggcaacgtggcacgattggaggtttcag-tttttgggcaaggcactggaaaaatcgtggcacgatggggtcacatcgtgg 9019832  T
Q  951 cacgatggtgcgctg 965  Q
    |||||||||||||||    
T  9019833 cacgatggtgcgctg 9019847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 828 - 967
Target Start/End: Complemental strand, 11983562 - 11983421
Alignment:
Q  828 agagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg-aaaa 925  Q
    |||||||||||||| |||||||||| ||||||||||| |||| ||||||||||  ||| ||||||||||||| ||  || || |  | ||||||| ||||    
T  11983562 agagttaacttaaaatcaggtttctgcagaatcgtggtacgatggttgggcaacatggtacgatggaggtttcag--ttgtgaggtaagcactggaaaaa 11983465  T
Q  926 tcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggc 967  Q
    |||| ||||||||||||| |||||| ||||||||||||||||||    
T  11983464 tcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 11983421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 824 - 905
Target Start/End: Complemental strand, 1072395 - 1072312
Alignment:
Q  824 tgtgagagttaactt-aaatcaggtttctacag-aatcgtggcacgacggttgggcaatgtggcacga-tggaggttttagtttt 905  Q
    ||||||||||||||| |||||||| |||| ||| |||||||| |||| |||||||||| ||||||||| ||||||||| ||||||    
T  1072395 tgtgagagttaacttaaaatcagg-ttctgcagaaatcgtggtacgatggttgggcaacgtggcacgattggaggtttaagtttt 1072312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 8932703 - 8932744
Alignment:
Q  23 agtgcgtatgtctctacgcatgagccggattagtcacccacc 64  Q
    |||||| ||| ||||||||||||||||||||| |||||||||    
T  8932703 agtgcgcatgcctctacgcatgagccggattaatcacccacc 8932744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 8944169 - 8944210
Alignment:
Q  23 agtgcgtatgtctctacgcatgagccggattagtcacccacc 64  Q
    |||||| ||| ||||||||||||||||||||| |||||||||    
T  8944169 agtgcgcatgcctctacgcatgagccggattaatcacccacc 8944210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 8e-64; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 8e-64
Query Start/End: Original strand, 824 - 1003
Target Start/End: Original strand, 47179428 - 47179612
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactg-g 921  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||      
T  47179428 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacggctgggcaacgtggcacgatggaggttttagttttttgggcaaggcactgaa 47179527  T
Q  922 aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttgt 1003  Q
    |||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  47179528 aaaatcgtggcacgatggggtctcatcgtggcacgatggtgcgcttgcggataaaaataaaacgtatttttgggagcagatttgt 47179612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 828 - 980
Target Start/End: Original strand, 16225891 - 16226047
Alignment:
Q  828 agagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg-aaaa 925  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  16225891 agagttaacttaaaatcaggtttctgcagaatcgtggcacgacggttgggcaacgtggcacgatggaggttttagttttttgggcaaggcactggaaaaa 16225990  T
Q  926 tcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaataaa 980  Q
    |||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  16225991 tcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcggataaaaataaa 16226047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 824 - 1003
Target Start/End: Original strand, 47177078 - 47177261
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||  ||||||| ||||||||||||||||||||| |||||||||||| ||||||     
T  47177078 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacgactgggcaacgtggcacgatggaggttttag-tttttgggcaagacactgga 47177176  T
Q  922 aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttgt 1003  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  47177177 aaaatcgtggcacgatggggtctcatcgtggcacgatggtgcgctggcggataaaaataaaacctatttttgggagcagatttgt 47177261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 824 - 1003
Target Start/End: Original strand, 51752104 - 51752290
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttg-ggcaaggcactgg 921  Q
    |||||||||||||||||| |||||||||| |||||||||||||||| |||||||||| |||||||||||||||||| ||||||||| |||||||||||||    
T  51752104 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgatggttgggcaacgtggcacgatggaggtttcagttttttgaggcaaggcactgg 51752203  T
Q  922 -aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcg--gataaaaataaacgtatttttgggagcagatttgt 1003  Q
     |||||||| ||||||||||| | |||||| |||||||||||||||||||  ||  || ||||||||||||||||| ||||||||||    
T  51752204 aaaaatcgtggcacgatggggccgcatcgtggcacgatggtgcgctggcggcgaataacataaacgtatttttgggtgcagatttgt 51752290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 823 - 1003
Target Start/End: Original strand, 51749777 - 51749964
Alignment:
Q  823 ctgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttg-ggcaaggcactg 920  Q
    ||||||||||||||||||| ||| |||||| |||||||||||||||| |||||||||| |||| ||||||||||||| ||||||||| ||||||||||||    
T  51749777 ctgtgagagttaacttaaaatcaagtttctgcagaatcgtggcacgatggttgggcaacgtggtacgatggaggtttcagttttttgaggcaaggcactg 51749876  T
Q  921 g-aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcg--gataaaaataaacgtatttttgggagcagatttgt 1003  Q
    | |||||||| ||||||||||||| |||||| ||||||| |||||||||||  ||  || | ||||||||||||||| ||||||||||    
T  51749877 gaaaaatcgtggcacgatggggtcgcatcgtggcacgatagtgcgctggcggcgaataacagaaacgtatttttgggtgcagatttgt 51749964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 824 - 1003
Target Start/End: Original strand, 13761577 - 13761762
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    |||||||||||||||||| |||||||||| |||||||||||||||| || ||||||| |||||| ||||||||||| |||||||  |||||||||||||     
T  13761577 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgatggctgggcaacgtggcatgatggaggtttcagtttttgaggcaaggcactgga 13761676  T
Q  922 aaaatcgt-gcacgatggggtctcatcg-tgcacgatggtgcgctggcg--gataaaaataaacgtatttttgggagcagatttgt 1003  Q
    |||||||| ||||||||||||| |||||  ||||||||||| |||||||  ||  || | ||||||||||||||| ||||||||||    
T  13761677 aaaatcgtggcacgatggggtcgcatcgcggcacgatggtgtgctggcggcgaataacagaaacgtatttttgggtgcagatttgt 13761762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 843 - 1003
Target Start/End: Original strand, 6823643 - 6823809
Alignment:
Q  843 caggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttg-ggcaaggcactgg-aaaatcgt-gcacgatggg 939  Q
    ||||||| | ||||||| |||||||| |||||||||| |||||||||||||||||| ||||||||| ||||||||||||| |||||||| ||| ||||||    
T  6823643 caggtttttgcagaatcatggcacgatggttgggcaacgtggcacgatggaggtttcagttttttgaggcaaggcactggaaaaatcgtggcatgatggg 6823742  T
Q  940 gtctcatcgt-gcacgatggtgcgctggcg--gataaaaataaacgtatttttgggagcagatttgt 1003  Q
    ||| |||||| |||||||||||||||||||  ||  || ||||||||||||||||| ||||||||||    
T  6823743 gtcgcatcgtggcacgatggtgcgctggcggcgaataacataaacgtatttttgggtgcagatttgt 6823809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 824 - 958
Target Start/End: Original strand, 23783238 - 23783376
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    |||||||||||||||||| |||||||||| || |||||||||||||| | |||||   | |||||||||||||||||||||||||||||||||||||||     
T  23783238 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacagctgggcttcgcggcacgatggaggttttagttttttgggcaaggcactgga 23783337  T
Q  922 aaaatcgt-gcacgatggggtctcatcgt-gcacgatgg 958  Q
    |||||||| ||||||||||||| |||||| |||||||||    
T  23783338 aaaatcgtggcacgatggggtcgcatcgtggcacgatgg 23783376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 824 - 925
Target Start/End: Original strand, 6822775 - 6822878
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttg-ggcaaggcactgg 921  Q
    |||||||||||||||||| |||||||||| |||||||||||||||| || ||||||| |||||||||||||||||| ||||||||| |||||||||||||    
T  6822775 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgatggctgggcaacgtggcacgatggaggtttcagttttttgaggcaaggcactgg 6822874  T
Q  922 aaaa 925  Q
    ||||    
T  6822875 aaaa 6822878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 824 - 969
Target Start/End: Original strand, 20302198 - 20302348
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttg-ggcaaggcactgg 921  Q
    |||||||||||||||||| |||| ||||| |||||||| |||| || ||   ||||| |||||||||||||||||| ||||||||| |||||||||||||    
T  20302198 tgtgagagttaacttaaaatcagatttctgcagaatcgcggcatgatggcaaggcaacgtggcacgatggaggtttcagttttttgaggcaaggcactgg 20302297  T
Q  922 -aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcgg 969  Q
     ||||| || ||||||||||||| |||||| ||||||||||||||||||||    
T  20302298 aaaaattgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcgg 20302348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 853 - 925
Target Start/End: Original strand, 16231371 - 16231443
Alignment:
Q  853 cagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactggaaaa 925  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  16231371 cagaatcgtggcacgacggctgggcaacgtggcacgatggaggttttagttttttgggcaagacactggaaaa 16231443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 824 - 1003
Target Start/End: Complemental strand, 10400369 - 10400184
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacga-tggaggttttagttttttgggcaaggcactgg 921  Q
    |||||||||||||||||| |||||||||| | ||||||||||||||  | ||||||| ||||||||| ||||||||| |   |||  ||||| |||||||    
T  10400369 tgtgagagttaacttaaaatcaggtttctgcggaatcgtggcacgattgctgggcaacgtggcacgattggaggtttca-agtttgaggcaaagcactgg 10400271  T
Q  922 aaa-atcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcgg--ataaaaataaacgtatttttgggagcagatttgt 1003  Q
    ||| ||||| ||||||||||||| |||||| |||||||||||||||||| |  |  || ||||||||||||||||| ||||||||||    
T  10400270 aaatatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcagcaaataacataaacgtatttttgggtgcagatttgt 10400184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 824 - 925
Target Start/End: Original strand, 20291280 - 20291383
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttg-ggcaaggcactgg 921  Q
    |||||||||||||||||| |||| ||||| |||||||||||||||| ||   ||||| |||||||| ||||||||| ||||||||| |||| ||||||||    
T  20291280 tgtgagagttaacttaaaatcagatttctgcagaatcgtggcacgatggcaaggcaacgtggcacggtggaggtttcagttttttgaggcatggcactgg 20291379  T
Q  922 aaaa 925  Q
    ||||    
T  20291380 aaaa 20291383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 950 - 1003
Target Start/End: Original strand, 23783389 - 23783443
Alignment:
Q  950 gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttgt 1003  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  23783389 gcacgatggtgcgctggcggataaaaataaaacatatttttgggagcagatttgt 23783443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 950 - 1003
Target Start/End: Original strand, 16231450 - 16231504
Alignment:
Q  950 gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttgt 1003  Q
    |||||||||||||||||||||||||||| |||| |||||||||| ||||||||||    
T  16231450 gcacgatggtgcgctggcggataaaaataaaacatatttttgggtgcagatttgt 16231504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 45726503 - 45726468
Alignment:
Q  22 cagtgcgtatgtctctacgcatgagccggattagtc 57  Q
    ||||||||||||||||||||||||||||||||||||    
T  45726503 cagtgcgtatgtctctacgcatgagccggattagtc 45726468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 821 - 905
Target Start/End: Original strand, 47451402 - 47451488
Alignment:
Q  821 gactgtgagagttaactt-aaatcaggtttctacagaa-tcgtggcacgacggttgggcaatgtggcacga-tggaggttttagtttt 905  Q
    |||||||||||||||||| ||||||| ||| | ||||| ||||||||||| || ||||||||||||||||| ||||||||| ||||||    
T  47451402 gactgtgagagttaacttcaaatcagattt-tgcagaaatcgtggcacgatggctgggcaatgtggcacgattggaggtttcagtttt 47451488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 33004085 - 33004032
Alignment:
Q  22 cagtgcgtatgtctctacgcatgagccggattagtcacccaccagtagtgggtc 75  Q
    ||||||| ||| ||||||||| |||||||||||||||||||||| | |||||||    
T  33004085 cagtgcgcatgcctctacgcacgagccggattagtcacccaccaatggtgggtc 33004032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 856 - 905
Target Start/End: Original strand, 13214854 - 13214904
Alignment:
Q  856 aatcgtggcacgacggttgggcaatgtggcacga-tggaggttttagtttt 905  Q
    ||||||||||||| |||||||||| ||||||||| ||||||||| ||||||    
T  13214854 aatcgtggcacgatggttgggcaacgtggcacgattggaggtttcagtttt 13214904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 28324650 - 28324608
Alignment:
Q  22 cagtgcgtatgtctctacgcatgagccggattagtcacccacc 64  Q
    ||||||| ||| |||||||||||||||||||||||||| ||||    
T  28324650 cagtgcgcatgcctctacgcatgagccggattagtcactcacc 28324608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 48798139 - 48798097
Alignment:
Q  23 agtgcgtatgtctctacgcatgagccggattagtcacccacca 65  Q
    |||||| ||| ||||||||||||||||||||||||||| ||||    
T  48798139 agtgcgcatgcctctacgcatgagccggattagtcacctacca 48798097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 26325850 - 26325903
Alignment:
Q  22 cagtgcgtatgtctctacgcatgagccggattagtcacccaccagtagtgggtc 75  Q
    ||||||| ||| ||||||||||||||||||||||||  |||||| | |||||||    
T  26325850 cagtgcgcatgcctctacgcatgagccggattagtcgtccaccattggtgggtc 26325903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 930 - 1003
Target Start/End: Complemental strand, 28207498 - 28207422
Alignment:
Q  930 gcacgatggggtctcatcgtg-cacgatggtgcgctggcg--gataaaaataaacgtatttttgggagcagatttgt 1003  Q
    ||||||||||||| || |||| ||||||||||||||||||  ||  || |||||||| |||||||| ||||||||||    
T  28207498 gcacgatggggtcacaacgtggcacgatggtgcgctggcggcgaataacataaacgtttttttgggtgcagatttgt 28207422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 3e-60; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 824 - 1027
Target Start/End: Complemental strand, 36559358 - 36559148
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    |||||||||||||||||| |||||||||| || |||||||||||||||| |||||   | |||||||||||||||||||||||||||||||||||||||     
T  36559358 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacggctgggcttcgcggcacgatggaggttttagttttttgggcaaggcactgga 36559259  T
Q  922 aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttg-tacagtttttgttac 1017  Q
    |||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||    
T  36559258 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcggataaaaataaaacatatttttgggagcagatttgttacagtttttgttac 36559159  T
Q  1018 -gatttgttac 1027  Q
     ||||||||||    
T  36559158 agatttgttac 36559148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 823 - 1027
Target Start/End: Complemental strand, 45332676 - 45332466
Alignment:
Q  823 ctgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg 921  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||   | ||||||||||||||||||||||||||||||||| |||||    
T  45332676 ctgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacggctgggcttcgcggcacgatggaggttttagttttttgggcaaggaactgg 45332577  T
Q  922 -aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttg-tacagtttttgtta 1016  Q
     |||||||| | ||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||    
T  45332576 aaaaatcgtggaacgatggggtcacatcgtggcacgatggtgcgctggcggataaaaataaaacgtatttttgggagcagatttgttacag-ttttgtta 45332478  T
Q  1017 c-gatttgttac 1027  Q
    | ||||||||||    
T  45332477 cagatttgttac 45332466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 824 - 1003
Target Start/End: Complemental strand, 24162752 - 24162566
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttg-ggcaaggcactgg 921  Q
    |||||||||||||||||| ||| |||||| |||||||||||||| | |||||||||| |||||||||||||||||| ||||||||| |||||||||||||    
T  24162752 tgtgagagttaacttaaaatcaagtttctgcagaatcgtggcacaatggttgggcaacgtggcacgatggaggtttcagttttttgaggcaaggcactgg 24162653  T
Q  922 -aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaa--ataaacgtatttttgggagcagatttgt 1003  Q
     |||||||| ||||||||||||| |||||| ||||||| |||||||||| |  || |  | ||||||||||||||| ||||||||||    
T  24162652 aaaaatcgtggcacgatggggtcgcatcgtggcacgattgtgcgctggctgcgaatattagaaacgtatttttgggtgcagatttgt 24162566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 824 - 968
Target Start/End: Complemental strand, 19502550 - 19502402
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    ||||| |||||||||||| |||||||||| |||||||||||||||| ||   ||||| |||||||||||||||||| |||||||| |||||||||||||     
T  19502550 tgtgatagttaacttaaaatcaggtttctgcagaatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagttttttaggcaaggcactgga 19502451  T
Q  922 aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcg 968  Q
    |||||||| ||||||||||||| |||||| |||||||||||||||||||    
T  19502450 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcg 19502402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 823 - 958
Target Start/End: Complemental strand, 36561678 - 36561539
Alignment:
Q  823 ctgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg 921  Q
    ||||||||||||||||||| |||||||||| || |||||||||||||||| |||||     |||||||||||||||||||||||||||||||||||||||    
T  36561678 ctgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacggctgggcttcacggcacgatggaggttttagttttttgggcaaggcactgg 36561579  T
Q  922 -aaaatcgt-gcacgatggggtctcatcgt-gcacgatgg 958  Q
     |||||||| ||||||||||||| |||||| |||||||||    
T  36561578 aaaaatcgtggcacgatggggtcgcatcgtggcacgatgg 36561539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 828 - 1003
Target Start/End: Original strand, 27104519 - 27104700
Alignment:
Q  828 agagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg-aaaa 925  Q
    |||||||||||||| |||| ||||| ||||||||||||||||  |  |||||| |||||||||||||||||| |||||||  ||||||||||||| ||||    
T  27104519 agagttaacttaaaatcagatttctgcagaatcgtggcacgattgaagggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactggaaaaa 27104618  T
Q  926 tcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggc--ggataaaaataaacgtatttttgggagcagatttgt 1003  Q
    |||| |||||||||| || |||||| ||||||||||||||||||  ||| ||| |||||| |||||||| | ||||||||||    
T  27104619 tcgtggcacgatgggatcgcatcgtggcacgatggtgcgctggcagggaaaaacataaacatatttttgagtgcagatttgt 27104700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 824 - 968
Target Start/End: Complemental strand, 19504884 - 19504736
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    ||||| |||||||||||| |||||||||  ||||||| |||||||| ||   ||||| |||||||||||||||||||| |||||| |||||||||||||     
T  19504884 tgtgaaagttaacttaaaatcaggtttcagcagaatcatggcacgatggcaaggcaacgtggcacgatggaggttttaattttttaggcaaggcactgga 19504785  T
Q  922 aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcg 968  Q
    |||||||| ||||||||||||| |||||| |||||||||||||||||||    
T  19504784 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcg 19504736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 930 - 1027
Target Start/End: Complemental strand, 36561526 - 36561425
Alignment:
Q  930 gcacgatggggtctcatcgtg-cacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttg-tacagtttttgttac-gatttgtt 1025  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||| ||||||||    
T  36561526 gcacgatggggtcgcatcgtggcacgatggtgcgctggcggataaaaataaaacatatttttgggagcagatttgttacagtttttgttacagatttgtt 36561427  T
Q  1026 ac 1027  Q
    ||    
T  36561426 ac 36561425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 824 - 1003
Target Start/End: Complemental strand, 21521234 - 21521049
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacag-aatcgtggcacgacggttgggcaatgtggcacga-tggaggttttagttttttgggcaaggcactg 920  Q
    |||||||||||||||||| ||||||| |||||| ||||||||||||| || ||||||| ||||||||| ||||||||| || ||||   ||||| |||||    
T  21521234 tgtgagagttaacttaaaatcaggtt-ctacaggaatcgtggcacgatggctgggcaacgtggcacgattggaggtttcag-ttttgaagcaagccactg 21521137  T
Q  921 g-aaaatcgtg-cacgatggggtctcatcgt-gcacgatggtgcgctggc--ggataaaaataaacgtatttttgggagcagatttgt 1003  Q
    | ||||||||| ||||||||| || || ||| ||||||||||||||||||   ||  || ||||||||||||||||| ||||||||||    
T  21521136 gaaaaatcgtgccacgatgggatcgcaacgtggcacgatggtgcgctggcagcgaataacataaacgtatttttgggtgcagatttgt 21521049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 824 - 905
Target Start/End: Complemental strand, 43624085 - 43624002
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacga-tggaggttttagtttt 905  Q
    ||||| |||||||||||| |||||||||| ||||||| |||||||| || |||||||  |||||||| ||||||||| ||||||    
T  43624085 tgtgaaagttaacttaaaatcaggtttctgcagaatcatggcacgatggctgggcaacatggcacgattggaggtttcagtttt 43624002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 2550905 - 2550946
Alignment:
Q  22 cagtgcgtatgtctctacgcatgagccggattagtcacccac 63  Q
    ||||||| |||||||||||||||||||||||||||| |||||    
T  2550905 cagtgcgcatgtctctacgcatgagccggattagtcgcccac 2550946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 824 - 905
Target Start/End: Complemental strand, 40032586 - 40032503
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaa-tcgtggcacgacggttgggcaatgtggcacga-tggaggttttagtttt 905  Q
    |||||||||||||||||| ||||||| || ||||| ||||||||||| || ||||||| ||||||||| ||||||||| ||||||    
T  40032586 tgtgagagttaacttaaaatcaggtt-ctgcagaaatcgtggcacgatggctgggcaacgtggcacgattggaggtttcagtttt 40032503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 14169678 - 14169643
Alignment:
Q  22 cagtgcgtatgtctctacgcatgagccggattagtc 57  Q
    ||||||| ||||||||||||||||||||||||||||    
T  14169678 cagtgcgcatgtctctacgcatgagccggattagtc 14169643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 6358220 - 6358154
Alignment:
Q  22 cagtgcgtatgtctctacgcatgagccggattagtcacccaccagtagtgggtcatagaccggtgtg 88  Q
    ||||||| ||| ||||||||||||||||||||||||  |||||| | |||||||  | |||||||||    
T  6358220 cagtgcgcatgcctctacgcatgagccggattagtcgtccaccattggtgggtcgaaaaccggtgtg 6358154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 10046560 - 10046511
Alignment:
Q  8 gaaacaacgctcggcagtgcgtatgtctctacgcatgagccggattagtc 57  Q
    ||||||||| | | ||||||| ||| ||||||||||||||||||||||||    
T  10046560 gaaacaacgtttgacagtgcgcatgcctctacgcatgagccggattagtc 10046511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 13026480 - 13026439
Alignment:
Q  22 cagtgcgtatgtctctacgcatgagccggattagtcacccac 63  Q
    ||||||| ||| ||||||||||||||||||||||||| ||||    
T  13026480 cagtgcgcatgcctctacgcatgagccggattagtcagccac 13026439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 1e-59; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 824 - 1026
Target Start/End: Original strand, 10749505 - 10749714
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    |||||||||||||||||| |||||||||| || |||||||||||||||| |||||   | |||||||||||||||||||||||||||||||||||||||     
T  10749505 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacggctgggcttcgcggcacgatggaggttttagttttttgggcaaggcactgga 10749604  T
Q  922 aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttg-tacagtttttgttac 1017  Q
    |||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||    
T  10749605 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcggataaaaataaaacatatttttgggagcagatttgttacagtttttgttac 10749704  T
Q  1018 -gatttgtta 1026  Q
     |||||||||    
T  10749705 agatttgtta 10749714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 115; E-Value: 7e-58
Query Start/End: Original strand, 824 - 1027
Target Start/End: Complemental strand, 15355065 - 15354855
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    |||||||||||||||||| |||||||||| || |||||||||||||| | |||||   | |||||||||||||||||||||||||||||||||||||||     
T  15355065 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacagctgggcttcgcggcacgatggaggttttagttttttgggcaaggcactgga 15354966  T
Q  922 aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttg-tacagtttttgttac 1017  Q
    |||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||    
T  15354965 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcggataaaaataaaacatatttttgggagcagatttgttacagtttttgttac 15354866  T
Q  1018 -gatttgttac 1027  Q
     ||||||||||    
T  15354865 agatttgttac 15354855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 115; E-Value: 7e-58
Query Start/End: Original strand, 824 - 1027
Target Start/End: Complemental strand, 15357341 - 15357131
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    |||||||||||||||||| |||||||||| || |||||||||||||| | |||||   | |||||||||||||||||||||||||||||||||||||||     
T  15357341 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacagctgggcttcgcggcacgatggaggttttagttttttgggcaaggcactgga 15357242  T
Q  922 aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttg-tacagtttttgttac 1017  Q
    |||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||    
T  15357241 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcggataaaaataaaacatatttttgggagcagatttgttacagtttttgttac 15357142  T
Q  1018 -gatttgttac 1027  Q
     ||||||||||    
T  15357141 agatttgttac 15357131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 824 - 1017
Target Start/End: Original strand, 10756960 - 10757159
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    |||||||||||||||||| |||||||||| || |||||| ||||||||| |||||   | |||||||||||||||||||||||||||||||||||||||     
T  10756960 tgtgagagttaacttaaaatcaggtttctgcacaatcgtagcacgacggctgggcttcgcggcacgatggaggttttagttttttgggcaaggcactgga 10757059  T
Q  922 aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttg-tacagtttttgttac 1017  Q
    |||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||    
T  10757060 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcggataaaaataaaacatatttttgggagcagatttgttacagtttttgttac 10757159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 824 - 1003
Target Start/End: Complemental strand, 34477632 - 34477448
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    |||||||||||||||||| ||| |||||| |||||||||||||||| || ||||||| ||||||||||||||||||||||||||| |||||||||||||     
T  34477632 tgtgagagttaacttaaaatcaagtttctgcagaatcgtggcacgatggctgggcaacgtggcacgatggaggttttagttttttaggcaaggcactgga 34477533  T
Q  922 aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttgt 1003  Q
    |||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| |||| |||||||||| ||||||||||    
T  34477532 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcggataaaaataaaacatatttttgggtgcagatttgt 34477448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 824 - 1001
Target Start/End: Original strand, 31544798 - 31544981
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    |||||||||||||||||| |||||||||| || |||||||||||||  | ||||||| |||||||||||||||||||||||||||||||||||||||||     
T  31544798 tgtgagagttaacttaaaatcaggtttctgcaaaatcgtggcacgatagctgggcaacgtggcacgatggaggttttagttttttgggcaaggcactgga 31544897  T
Q  922 aaaatcgt-gcacgatggggtctcatcgtg-cacgatggtgcgctggcggataaaa--ataaacgtatttttgggagcagattt 1001  Q
    |||||||| ||||||||||||||||||| | |||||||||||||||||||||||||  | |||| |||||||||| ||||||||    
T  31544898 aaaatcgtggcacgatggggtctcatcgagacacgatggtgcgctggcggataaaaacagaaacatatttttgggtgcagattt 31544981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 823 - 1003
Target Start/End: Original strand, 31542441 - 31542627
Alignment:
Q  823 ctgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg 921  Q
    ||||||||||||||||||| |||||||||| || ||||||| |||||  | ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  31542441 ctgtgagagttaacttaaaatcaggtttctgcaaaatcgtgacacgatagctgggcaacgtggcacgatggaggttttagttttttgggcaaggcactgg 31542540  T
Q  922 -aaaatcgt-gcacgatggggtctcatcgtg-cacgatggtgcgctggcggataaaa--ataaacgtatttttgggagcagatttgt 1003  Q
     |||||||| ||||||||||||||||||| | |||||||||||||||||||||||||  | |||| |||||||||| ||||||||||    
T  31542541 aaaaatcgtggcacgatggggtctcatcgagacacgatggtgcgctggcggataaaaacagaaacatatttttgggtgcagatttgt 31542627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 824 - 1027
Target Start/End: Original strand, 23664834 - 23665044
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    |||||||||||||||||| |||||||||| || |||||||||||||| | |||||   | |||||||||||| ||||| ||||||||| ||||||||||     
T  23664834 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacagctgggcttcgcggcacgatggagtttttatttttttgggaaaggcactgga 23664933  T
Q  922 aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttg-tacagtttttgttac 1017  Q
    |||||||| |||||||||| || |||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||    
T  23664934 aaaatcgtggcacgatgggatcgcatcgtggcacgatggtgcgctggcggataaaaataaaacatatttttgggagcagatttgttacagtttttgttac 23665033  T
Q  1018 -gatttgttac 1027  Q
     ||||||||||    
T  23665034 agatttgttac 23665044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 824 - 1027
Target Start/End: Original strand, 23667109 - 23667319
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    |||||||||||||||||| |||||||||| || |||||||||||||| | |||||   | |||||||||||| ||||| ||||||||| ||||||||||     
T  23667109 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacagctgggcttcgcggcacgatggagtttttatttttttgggaaaggcactgga 23667208  T
Q  922 aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttg-tacagtttttgttac 1017  Q
    |||||||| |||||||||| || |||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||    
T  23667209 aaaatcgtggcacgatgggatcgcatcgtggcacgatggtgcgctggcggataaaaataaaacatatttttgggagcagatttgttacagtttttgttac 23667308  T
Q  1018 -gatttgttac 1027  Q
     ||||||||||    
T  23667309 agatttgttac 23667319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 824 - 1027
Target Start/End: Complemental strand, 23793753 - 23793543
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    |||||||||||||||||| |||||||||| || |||||||||||||| | |||||   | |||||||||||| ||||| ||||||||| ||||||||||     
T  23793753 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacagctgggcttcgcggcacgatggagtttttatttttttgggaaaggcactgga 23793654  T
Q  922 aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttg-tacagtttttgttac 1017  Q
    |||||||| |||||||||| || |||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||    
T  23793653 aaaatcgtggcacgatgggatcgcatcgtggcacgatggtgcgctggcggataaaaataaaacatatttttgggagcagatttgttacagtttttgttac 23793554  T
Q  1018 -gatttgttac 1027  Q
     ||||||||||    
T  23793553 agatttgttac 23793543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 881 - 1027
Target Start/End: Complemental strand, 31179896 - 31179744
Alignment:
Q  881 gtggcacgatggaggttttagttttttgggcaaggcactgg-aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat 977  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||    
T  31179896 gtggcacgatggaggttttagttttttgggcaagacactggaaaaatcgtggcacgatggggtctcatcgtggcacgatggtgcgctggcgggtaaaaat 31179797  T
Q  978 -aaacgtatttttgggagcagatttg-tacagtttttgttac-gatttgttac 1027  Q
     ||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  31179796 aaaacgtatttttgggagcagatttgttacagtttttgttacagatttgttac 31179744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 824 - 925
Target Start/End: Complemental strand, 34479972 - 34479870
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgga 922  Q
    |||||||||||||||||| |||||||||| |||||||||||||||| || ||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  34479972 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgatggctgggcaacgtggcacgatggaggttttagttttttaggcaaggcactgga 34479873  T
Q  923 aaa 925  Q
    |||    
T  34479872 aaa 34479870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 824 - 1027
Target Start/End: Complemental strand, 38960604 - 38960415
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    |||||||||||||||||| |||||||||| || |||||||||||||||| |||||  || |||||||||||||||||||||||||||||||||||||||     
T  38960604 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacggctgggctttgcggcacgatggaggttttagttttttgggcaaggcactgga 38960505  T
Q  922 aaaatcgtgcacgatggggtctcatcgtgcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttg-tacagtttttgttac-g 1018  Q
    |||||||||                   ||||||||||||| |||||||||||||| |||| |||||||||||||||||||| ||||||||||||||| |    
T  38960504 aaaatcgtg-------------------gcacgatggtgcgttggcggataaaaataaaacatatttttgggagcagatttgttacagtttttgttacag 38960424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 855 - 1003
Target Start/End: Original strand, 38881877 - 38882030
Alignment:
Q  855 gaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg-aaaatcgt-gcacgatggggtctcatcgt-gc 951  Q
    ||||||||||||||  | ||||||| ||||||||||||||||||||||||||  ||||||||||||| |||||||| ||||||||||||| |||||| ||    
T  38881877 gaatcgtggcacgattgctgggcaacgtggcacgatggaggttttagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 38881976  T
Q  952 acgatggtgcgctggcg--gataaaaataaacgtatttttgggagcagatttgt 1003  Q
    |||||||||||||||||  ||  || | ||||||||||||||| ||||||||||    
T  38881977 acgatggtgcgctggcggcgaataacagaaacgtatttttgggtgcagatttgt 38882030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 824 - 925
Target Start/End: Complemental strand, 25921992 - 25921889
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttg-ggcaaggcactgg 921  Q
    |||||||||||||||||| |||||||||| |||||||||||||||| |||||| ||| |||||||||||||||||| ||||||||| |||||||||||||    
T  25921992 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgatggttggacaacgtggcacgatggaggtttcagttttttgaggcaaggcactgg 25921893  T
Q  922 aaaa 925  Q
    ||||    
T  25921892 aaaa 25921889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 824 - 925
Target Start/End: Original strand, 2174680 - 2174782
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgga 922  Q
    |||||||||||||||||| |||||||||| |||||||||||||||| ||   ||||| |||||||||||||||||| |||||||| ||||||||||||||    
T  2174680 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagttttttaggcaaggcactgga 2174779  T
Q  923 aaa 925  Q
    |||    
T  2174780 aaa 2174782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 822 - 925
Target Start/End: Original strand, 39797847 - 39797951
Alignment:
Q  822 actgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactg 920  Q
    |||||||||||||||||||| |||||||||| || ||||||||||||| || ||||||| |||||| ||||||||||| |||||||  |||||||||| |    
T  39797847 actgtgagagttaacttaaaatcaggtttctgcataatcgtggcacgatggctgggcaacgtggcatgatggaggtttcagtttttgaggcaaggcaccg 39797946  T
Q  921 gaaaa 925  Q
    |||||    
T  39797947 gaaaa 39797951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 828 - 967
Target Start/End: Original strand, 4236374 - 4236517
Alignment:
Q  828 agagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgat-ggaggttttagttttttgggcaaggcactggaaaa 925  Q
    |||||||||||||| |||| ||||| |||||| ||||||||| || ||||||| |||||||||| |||||||| ||||||  || |||||||||||||||    
T  4236374 agagttaacttaaaatcagatttctgcagaattgtggcacgatggctgggcaacgtggcacgattggaggtttcagttttaagg-caaggcactggaaaa 4236472  T
Q  926 -tcgtg-cacgatggggtctcatcgtg-cacgatggtgcgctggc 967  Q
     ||||| ||| ||||| || ||||||| |||||||||||||||||    
T  4236473 atcgtggcacaatgggatcgcatcgtggcacgatggtgcgctggc 4236517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 824 - 887
Target Start/End: Complemental strand, 21684969 - 21684905
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcac 887  Q
    |||||||||||||||||| |||||||||| |||||||||||||||| || ||||||| |||||||    
T  21684969 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgatggctgggcaacgtggcac 21684905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 824 - 905
Target Start/End: Complemental strand, 18186587 - 18186504
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacga-tggaggttttagtttt 905  Q
    |||||||||||||||||| ||| |||||| ||||||||||| |||| || ||||||| ||||||||| ||||||||| ||||||    
T  18186587 tgtgagagttaacttaaaatcaagtttctgcagaatcgtggtacgatggctgggcaacgtggcacgattggaggtttcagtttt 18186504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 950 - 1003
Target Start/End: Complemental strand, 34479863 - 34479809
Alignment:
Q  950 gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttgt 1003  Q
    |||||||||||||||||||||||||||| |||| |||||||||| ||||||||||    
T  34479863 gcacgatggtgcgctggcggataaaaataaaacatatttttgggtgcagatttgt 34479809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 824 - 868
Target Start/End: Complemental strand, 31179933 - 31179888
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacga 868  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||    
T  31179933 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacga 31179888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 824 - 905
Target Start/End: Complemental strand, 20504452 - 20504369
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaa-tcgtggcacgacggttgggcaatgtggcacga-tggaggttttagtttt 905  Q
    |||||||||||||||||| ||||||| || ||||| |||||||||||  | ||||||| ||||||||| ||||||||||||||||    
T  20504452 tgtgagagttaacttaaaatcaggtt-ctgcagaaatcgtggcacgatagctgggcaacgtggcacgattggaggttttagtttt 20504369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 824 - 905
Target Start/End: Complemental strand, 20508001 - 20507918
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaa-tcgtggcacgacggttgggcaatgtggcacga-tggaggttttagtttt 905  Q
    |||||||||||||||||| ||||||| || ||||| |||||||||||  ||||||||| || |||||| ||||||||||||||||    
T  20508001 tgtgagagttaacttaaaatcaggtt-ctgcagaaatcgtggcacgatagttgggcaacgtagcacgattggaggttttagtttt 20507918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 117; Significance: 4e-59; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 824 - 1003
Target Start/End: Complemental strand, 13054 - 12870
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    |||||||||||||||||| |||||||||| |||||||||||||||| |    ||||| |||||||||||||||||||||||||||||||||||||||||     
T  13054 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgatgtcaaggcaacgtggcacgatggaggttttagttttttgggcaaggcactgga 12955  T
Q  922 aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttgt 1003  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  12954 aaaatcgtggcacgatggggtctcatcgtggcacgatggtgcgctggcggataaaaataaaacgtatttttgggagcagatttgt 12870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 4e-59; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 824 - 1003
Target Start/End: Original strand, 43079347 - 43079531
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||   ||||| |||||||||||||||||||||||||||||||||||||||||     
T  43079347 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacggcaaggcaacgtggcacgatggaggttttagttttttgggcaaggcactgga 43079446  T
Q  922 aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttgt 1003  Q
    |||||||| | |||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  43079447 aaaatcgtggtacgatggggtctcatcgtggcacgatggtgcgctggcggataaaaataaaacgtatctttgggagcagatttgt 43079531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 824 - 1003
Target Start/End: Original strand, 43081722 - 43081906
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||   ||||| |||||||||||||||||||||||||||||||||||||||||     
T  43081722 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacggcaaggcaaagtggcacgatggaggttttagttttttgggcaaggcactgga 43081821  T
Q  922 aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttgt 1003  Q
    |||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||| |||||||||||||||||    
T  43081822 aaaatcgtggcacgatggggtctcatcgtggcacgatggtacgctggcggataaaaataaaacgtatctttgggagcagatttgt 43081906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 824 - 1003
Target Start/End: Original strand, 18812668 - 18812852
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    |||||||||||||||||| ||||||||||  |||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||     
T  18812668 tgtgagagttaacttaaaatcaggtttctgaagaatcgtggcacgacggctgggcaacgtggcacgatggaggttttagttttttaggcaaggcactgga 18812767  T
Q  922 aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttgt 1003  Q
    |||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| |||| |||||||||| ||||||||||    
T  18812768 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcggataaaaataaaacatatttttgggtgcagatttgt 18812852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 823 - 1003
Target Start/End: Original strand, 18810482 - 18810667
Alignment:
Q  823 ctgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg 921  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||| |||||| |||||||||||||    
T  18810482 ctgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacggctgggcaacgtggcacgatggaggttttatttttttaggcaaggcactgg 18810581  T
Q  922 aaaa--tcgtgcacgatggggtctcatcgtg-cacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttgt 1003  Q
    ||||  |   ||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||  ||||||||| ||||||||||    
T  18810582 aaaaattgcggcacgatggggtcacatcgtggcacgatggtgcgctggcggataaaaataaaacacatttttgggtgcagatttgt 18810667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 824 - 1003
Target Start/End: Original strand, 44720617 - 44720802
Alignment:
Q  824 tgtgagagttaactt-aaatcagg-tttctacagaatcgtggcacgacggttgggcaatgtggcacg-atggaggttttagttttttgggcaaggcactg 920  Q
    ||||||||||||||| |||||||| ||||| ||||||||||||| ||  | |||||| |||||||||  ||||||||| || ||||  ||||||| ||||    
T  44720617 tgtgagagttaacttaaaatcaggttttctgcagaatcgtggcatgattgctgggcattgtggcacgtttggaggtttcag-ttttgaggcaaggtactg 44720715  T
Q  921 g-aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggc-ggataaaaataaacgtatttttgggagcagatttgt 1003  Q
    | |||||||| ||||||||||||| |||||| |||||||||||||||||| | | ||| | |||| |||||||||| ||||||||||    
T  44720716 gaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcagcaaaaacagaaacatatttttgggtgcagatttgt 44720802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 828 - 967
Target Start/End: Original strand, 14807552 - 14807695
Alignment:
Q  828 agagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacga-tggaggttttagttttttgggcaaggcactgg-aaa 924  Q
    |||||||||||||| |||||||||| ||||||||||||| || |||||||||| ||| ||||| ||||||||| |   |||  ||||| ||||||| |||    
T  14807552 agagttaacttaaaatcaggtttctgcagaatcgtggcatgatggttgggcaacgtgacacgattggaggtttca-agtttgaggcaaagcactggaaaa 14807650  T
Q  925 atcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggc 967  Q
    ||||| ||||||||||||| |||||| ||||| ||||||||||||    
T  14807651 atcgtggcacgatggggtcgcatcgtggcacggtggtgcgctggc 14807695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 824 - 967
Target Start/End: Original strand, 27826782 - 27826929
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacag-aatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg 921  Q
    |||||||||||||||||| ||||| | || ||| |||||||||||||  | ||||||| |||||||||||||||||| | |||||   |||| |||||||    
T  27826782 tgtgagagttaacttaaaatcaggat-ctgcaggaatcgtggcacgattgctgggcaacgtggcacgatggaggtttcattttttgaagcaaagcactgg 27826880  T
Q  922 -aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggc 967  Q
     |||||||| |||||||||| || |||||| ||||||||||||||||||    
T  27826881 aaaaatcgtggcacgatgggatcgcatcgtggcacgatggtgcgctggc 27826929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 824 - 967
Target Start/End: Original strand, 27829093 - 27829240
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacag-aatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg 921  Q
    |||||||||||||||||| ||||| | || ||| |||||||||||||  | ||||||| |||||||||||||||||| | |||||  |||||  ||||||    
T  27829093 tgtgagagttaacttaaaatcaggat-ctgcaggaatcgtggcacgattgctgggcaacgtggcacgatggaggtttcattttttgaggcaaaacactgg 27829191  T
Q  922 -aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggc 967  Q
     |||||||| |||||||||| || |||||| ||||||||||||||||||    
T  27829192 aaaaatcgtggcacgatgggatcgcatcgtggcacgatggtgcgctggc 27829240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 844 - 925
Target Start/End: Complemental strand, 3886419 - 3886337
Alignment:
Q  844 aggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttg-ggcaaggcactggaaaa 925  Q
    |||||||| |||||||||| || || || ||| ||| |||||||||||||||||| ||||||||| |||||| ||||||||||    
T  3886419 aggtttctgcagaatcgtgacatgatggctggacaacgtggcacgatggaggtttcagttttttgaggcaagacactggaaaa 3886337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 115; Significance: 7e-58; HSPs: 2)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 115; E-Value: 7e-58
Query Start/End: Original strand, 824 - 1027
Target Start/End: Original strand, 21915 - 22125
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    |||||||||||||||||| |||||||||| || |||||||||||||| | |||||   | |||||||||||||||||||||||||||||||||||||||     
T  21915 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacagctgggcttcgcggcacgatggaggttttagttttttgggcaaggcactgga 22014  T
Q  922 aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttg-tacagtttttgttac 1017  Q
    |||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||    
T  22015 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcggataaaaataaaacatatttttgggagcagatttgttacagtttttgttac 22114  T
Q  1018 -gatttgttac 1027  Q
     ||||||||||    
T  22115 agatttgttac 22125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140; HSP #2
Raw Score: 115; E-Value: 7e-58
Query Start/End: Original strand, 824 - 1027
Target Start/End: Original strand, 24190 - 24400
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactgg- 921  Q
    |||||||||||||||||| |||||||||| || |||||||||||||| | |||||   | |||||||||||||||||||||||||||||||||||||||     
T  24190 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacagctgggcttcgcggcacgatggaggttttagttttttgggcaaggcactgga 24289  T
Q  922 aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttg-tacagtttttgttac 1017  Q
    |||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||    
T  24290 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcggataaaaataaaacatatttttgggagcagatttgttacagtttttgttac 24389  T
Q  1018 -gatttgttac 1027  Q
     ||||||||||    
T  24390 agatttgttac 24400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 99; Significance: 2e-48; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 822 - 1003
Target Start/End: Original strand, 5925 - 6111
Alignment:
Q  822 actgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacgatggaggttttagttttttgggcaaggcactg 920  Q
    |||||||||||||||||||| |||||||||| || |||||||||||||||| |||||   | ||||||||||||||||||||||||| ||||||||||||    
T  5925 actgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacggctgggcttcgcggcacgatggaggttttagttttttaggcaaggcactg 6024  T
Q  921 g-aaaatcgt-gcacgatggggtctcatcgt-gcacgatggtgcgctggcggataaaaat-aaacgtatttttgggagcagatttgt 1003  Q
    | |||||||| ||| |||||||||||||| | |||||||||||||||||||||||||||| |||| |||||||||| ||||||||||    
T  6025 gaaaaatcgtggcatgatggggtctcatcatggcacgatggtgcgctggcggataaaaataaaacatatttttgggtgcagatttgt 6111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 824 - 887
Target Start/End: Original strand, 28941 - 29005
Alignment:
Q  824 tgtgagagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcac 887  Q
    |||||||||||||||||| |||||||||| |||||||||||||||| || ||||||| |||||||    
T  28941 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgatggctgggcaacgtggcac 29005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 828 - 898
Target Start/End: Complemental strand, 69829 - 69757
Alignment:
Q  828 agagttaacttaaa-tcaggtttctacagaatcgtggcacgacggttgggcaatgtggcacga-tggaggttt 898  Q
    |||||||||||||| |||| ||||| |||||||||||||||| || | ||||| ||||||||| |||||||||    
T  69829 agagttaacttaaaatcagatttctgcagaatcgtggcacgatggctaggcaacgtggcacgattggaggttt 69757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 16904 - 16954
Alignment:
Q  8 gaaacaacgctcgg-cagtgcgtatgtctctacgcatgagccggattagtc 57  Q
    ||||||||||| || ||||||||||||||||||||| ||||| ||||||||    
T  16904 gaaacaacgcttggtcagtgcgtatgtctctacgcacgagccagattagtc 16954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University