View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4812-Insertion-10 (Length: 159)
Name: NF4812-Insertion-10
Description: NF4812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4812-Insertion-10 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 5e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 5e-79
Query Start/End: Original strand, 7 - 159
Target Start/End: Original strand, 32515553 - 32515705
Alignment:
| Q |
7 |
agttgaagtctttggatatttccattgtcctgatttcgcaaaaagcttgaggaacattccacaagcttgaagacagataactatgtgtttcctcaatcaa |
106 |
Q |
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| T |
32515553 |
agttgaagtctttggatatttccattgtcctgatttcgcaaaaagcttgaggaacattccacaagcttgaagacagataactatgtgtttcctcaatcaa |
32515652 |
T |
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| Q |
107 |
tgcaggaaagaatgaattcacgtagtcatttgttgacatgaacgtctttggaa |
159 |
Q |
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| T |
32515653 |
tgcaggaaagaatgaattcacgtagtcatttgttgagatgaacgtctttggaa |
32515705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 32542188 - 32542047
Alignment:
| Q |
21 |
gatatttccattgtcctgatttcgcaaaaag---cttgaggaacattccacaagcttgaagacagataactatgtgtttcctcaatcaatgcaggaaaga |
117 |
Q |
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| T |
32542188 |
gatatttccattgttctgatttcacaaaaagaagctttaggcacactcatcaagcttgaatatagatcactatgtgtttcctcaatcaatgcaggaaaga |
32542089 |
T |
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| Q |
118 |
atgaattcacgtagtcatttgttgacatgaacgtctttggaa |
159 |
Q |
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| T |
32542088 |
atgaattcgtgtaatcatttgttgacaagaatgtcttcggaa |
32542047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 114
Target Start/End: Original strand, 28858330 - 28858377
Alignment:
| Q |
67 |
acaagcttgaagacagataactatgtgtttcctcaatcaatgcaggaa |
114 |
Q |
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| T |
28858330 |
acaagcttgaagacagatcactatgagtttcctcaaccaatgaaggaa |
28858377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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