View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4812-Insertion-12 (Length: 228)
Name: NF4812-Insertion-12
Description: NF4812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4812-Insertion-12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 7019049 - 7019271
Alignment:
| Q |
8 |
gatgagtgaccaagactcaagctctccttcgaccacgtccttgtgctgatgcggtgatgagctaccaatgctcaagctctccttcgatcgacgtctttat |
107 |
Q |
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| T |
7019049 |
gatgagtgaccaagactcaagctctccttcgaccacgtccttgtgctgatgcggtgatgagctaccaatgctcaagctctccttcgaccgacgtctttat |
7019148 |
T |
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| Q |
108 |
ttcagttcttggtataactcaaacgggagaaaattgtaggactagtgaaattaaaacaatattgat--tatgagagaattgttacaacaaatagtacatt |
205 |
Q |
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| T |
7019149 |
ttcagttcttggtataactcaaacgggagaaaattataggacaagtgaaattaaaataatattgattatatgagagaattgttacaacaaatagtacatt |
7019248 |
T |
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| Q |
206 |
aaggtttagatagccaattgaac |
228 |
Q |
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| T |
7019249 |
aaggtttagatagccaattgaac |
7019271 |
T |
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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 26925818 - 26925882
Alignment:
| Q |
160 |
aaaacaatattgattatgagagaattgttacaacaaatagtacattaaggtttagatagccaatt |
224 |
Q |
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| T |
26925818 |
aaaataatattgattatgagagaattgttacattaactagtacattaaggcttatatagccaatt |
26925882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 42395649 - 42395697
Alignment:
| Q |
159 |
taaaacaatattgattatgagagaattgttacaacaaatagtacattaa |
207 |
Q |
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| T |
42395649 |
taaaaaaatattgattattagagaattgttacatcaagtagtacattaa |
42395697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 20199413 - 20199457
Alignment:
| Q |
160 |
aaaacaatattgattatgagagaattgttacaacaaatagtacat |
204 |
Q |
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| T |
20199413 |
aaaataatattcattatgagagagttgttacatcaaatagtacat |
20199457 |
T |
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