View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4812-Insertion-3 (Length: 828)

Name: NF4812-Insertion-3
Description: NF4812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4812-Insertion-3
NF4812-Insertion-3
[»] chr7 (2 HSPs)
chr7 (225-828)||(24519661-24520268)
chr7 (95-160)||(24520332-24520397)


Alignment Details
Target: chr7 (Bit Score: 491; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 225 - 828
Target Start/End: Complemental strand, 24520268 - 24519661
Alignment:
Q  225 gagtcaagagggtaattgagaaagtgaaaaagttgtgaagtttgagatgaaaataagcataagtggtggttgtgaaagaagaagtgaagtggaacagaaa 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24520268 gagtcaagagggtaattgagaaagtgaaaaagttgtgaagtttgagatgaaaataagcataagtggtggttgtgaaagaagaagtgaagtggaacagaaa 24520169  T
Q  325 tgtgtatgatgatgttactttgttgtgtgatttgaaagacagtga----tctatgaaacagggaattgaagagtgagaaaatgaaagaaagagaaagaga 420  Q
    |||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24520168 tgtgtatgatgatgttactttgttgtgtgatttgaaagacagtgagtgatctatgaaacaggaaattgaagagtgagaaaatgaaagaaagagaaagaga 24520069  T
Q  421 ggtcaaagggggtgagttgtgattggtggagataatgtttgtggtggctgaggaataatttatattctttttatattatgagtgaattatatgagccact 520  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24520068 ggtcaaagggggtgagttgtgattggtggagataatgtttgtggtggctgaggaataatttatattctttttatattatgagtgaattatatgagccact 24519969  T
Q  521 ttgattaacnnnnnnnngaaacatgcatgtgataatctttgttttactcgataaaaattagattgattaaaaatcatataannnnnnnngtaaactggtt 620  Q
    |||||||||        || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||    
T  24519968 ttgattaacttttgtttgagacatgcatgtgataatctttgttttactcgataaaaattagattgattaaaaatcatataattttttttgtaaactggtt 24519869  T
Q  621 atcctctaaatagagggaaaactttctttgagaggtttaagtttaacactattgcatgtttaaaaatggatttgaattcaaaattttgtttaagttataa 720  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  24519868 atcctctaaacagagggaaaactttctttgagaggtttaagtttaacactattgcatgtttaaaaatagatttgaatttaaaattttgtttaagttataa 24519769  T
Q  721 gagacatgtattattttatctaagcgtccttatctcaaatttaaaatcatatgtaaattgatcatgacttaattttaagtcatcaacaactcaatttagt 820  Q
    |||| ||||||||| ||||||||||||| |||| |||||||||||||||||| | ||||| ||||||||||||||||||||| |||||||||||||||||    
T  24519768 gagagatgtattatcttatctaagcgtctttatgtcaaatttaaaatcatatatgaattggtcatgacttaattttaagtcaccaacaactcaatttagt 24519669  T
Q  821 ttgatatg 828  Q
    ||||||||    
T  24519668 ttgatatg 24519661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 24520397 - 24520332
Alignment:
Q  95 acaaaacccacatcaagttttagaacatgagggtttttgagtgaaattaagcaactgggtcagttt 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24520397 acaaaacccacatcaagttttagaacatgagggtttttgagtgaaattaagcaactgggtcagttt 24520332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University