View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4812-Insertion-4 (Length: 788)
Name: NF4812-Insertion-4
Description: NF4812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4812-Insertion-4 |
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| [»] scaffold0202 (2 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 457; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 8 - 644
Target Start/End: Complemental strand, 31051860 - 31051191
Alignment:
| Q |
8 |
ctcaagtcctcattcaaatgggaatgctatatatgaaacttggtgattcaccctttcaataattccttttccttccgttatttgcgtttcaggtgaatca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
31051860 |
ctcaagtcctcattcaaatgggaatgctatatatgaaacttggtgattcaccctttcaataattccttttccttccgttatttgcgtttctggtgaatcg |
31051761 |
T |
|
| Q |
108 |
gcctcaaagcattaag----------cct---caaagccttggtgctgaatatgcaccagattgatgaatgtacgaggcctaaaaatataattcaagaaa |
194 |
Q |
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|||||||||| ||||| ||| || |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| || |
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| T |
31051760 |
gcctcaaagccttaagttccttctatcctaagcacagccttggtgctgaatatgcaccagattgatgaatgcatgaggcctaaaaatataattcaaggaa |
31051661 |
T |
|
| Q |
195 |
gtatttagttgaagtagatttattagctttcattcaaagatgttctagcataaatcgtattcccaacattactataccgctttcattcatattgatagaa |
294 |
Q |
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| T |
31051660 |
gcatttagttgaagtagatttattagctttcattcaaagagattctagcataaatcgtattcccaacattactataccgctttcattcatattgatagaa |
31051561 |
T |
|
| Q |
295 |
tctgaagaaagtnnnnnnnccaatccataaccctagctagattcatgggtctcaaatacattgattaataatctacatctatataagtaagtatcaaagc |
394 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
31051560 |
tctgaagaaagtaaaaaaaccaatccataaccctagctagattcatgggtctcaaatacattgattaataatctatatctatataaataagtatcaaagc |
31051461 |
T |
|
| Q |
395 |
aaacaat---------------------agaacatgtatcaactcgtagaaatatatcatgacccattaaaaataaggtgaacgaggaagtaattatgtt |
473 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31051460 |
aaacaatatagataggttctgttcaatgagaacatgtatcaactcgtagaaatatatcatgatccattaaaaataaggtgaacgaggaagtaattatgtt |
31051361 |
T |
|
| Q |
474 |
ttagaatattgcaaatttttgttactctaattgaagtccaaaccatcaccacttttcttaacgccccttactactattgcttccatgtttgttttcttga |
573 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||| |
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| T |
31051360 |
ttagaatattgcaaatttttgttactctaattgaagtccaaaccatcaccacttttctcaacgccccttactactattgcttccatgtttgtctt-ttga |
31051262 |
T |
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| Q |
574 |
ggcaattgtttgcaacaatctgaattgaatttgaacatttcaaacaactccacaagtttgttatctaaatg |
644 |
Q |
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| T |
31051261 |
ggcatttgtttgcaacaatctgaattgaatttgaacatttcaaataactccacaagtttgttatctaaatg |
31051191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 465 - 697
Target Start/End: Original strand, 31093922 - 31094164
Alignment:
| Q |
465 |
aattatgttttagaatattgcaaatttttgttactctaattgaagtccaaaccatcaccacttttcttaacgcccctta-----ctactattgcttc-ca |
558 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||| ||||||| | | |||||||||||| || |
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| T |
31093922 |
aattatgttttagaatattgcaaatttctgttactctaattgaaatccaaaccatcaccacttatctcaacgcccttaatttaactactattgcttgtca |
31094021 |
T |
|
| Q |
559 |
tgtttg----ttttcttgaggcaattgtttgcaacaatctgaattgaatttgaacatttcaaacaactccacaagtttgttatctaaatgtaacaatgat |
654 |
Q |
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| || || |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31094022 |
tcttgaggcattgaattgaggcatgtgtttgcaaatatctgaattgaatttgaacatttcaaacaactccacaagtttgttatctaaatgtaacaatgat |
31094121 |
T |
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| Q |
655 |
gataatacctaaatgcaactaatattggtaacaataaattcag |
697 |
Q |
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| T |
31094122 |
gttaatatctaaatgcaactaatattggtaacaataaattcag |
31094164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 9 - 117
Target Start/End: Complemental strand, 31110361 - 31110254
Alignment:
| Q |
9 |
tcaagtcctcattcaaatgggaatgctatatatgaaacttggtgattcaccctttcaataattccttttccttccgttatttgcgtttcaggtgaatcag |
108 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | || | ||| |
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| T |
31110361 |
tcaagtcctcattcaa-tgggaatgctatatatgaaacttggtgattcaccctttcaataattccttttccttccgtaatttgcgtttctgttgtaacag |
31110263 |
T |
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| Q |
109 |
cctcaaagc |
117 |
Q |
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||||||||| |
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| T |
31110262 |
cctcaaagc |
31110254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 663 - 697
Target Start/End: Complemental strand, 31051197 - 31051163
Alignment:
| Q |
663 |
ctaaatgcaactaatattggtaacaataaattcag |
697 |
Q |
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|||||||||||||||||| |||||||||||||||| |
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| T |
31051197 |
ctaaatgcaactaatatttgtaacaataaattcag |
31051163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 92; Significance: 3e-44; HSPs: 2)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 545 - 697
Target Start/End: Original strand, 2709 - 2867
Alignment:
| Q |
545 |
tactattgcttccatgtttgttttcttgaggcaattgtttgcaacaatctgaattgaatttgaacatttcaaacaactccacaagtttgttatc------ |
638 |
Q |
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||||||| ||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
2709 |
tactattacttccatgtttgtcttcttgaggcatgtgcttgcaacaatctgaattgaatttgaacatttcgaagaactccacaagtttgttatctaaatg |
2808 |
T |
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| Q |
639 |
taaatgtaacaatgatgataatacctaaatgcaactaatattggtaacaataaattcag |
697 |
Q |
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||||||||||||||||| ||||| ||||||||||||||| | ||||||||||||||||| |
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| T |
2809 |
taaatgtaacaatgatgttaatatctaaatgcaactaatgtcggtaacaataaattcag |
2867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 426 - 499
Target Start/End: Original strand, 2639 - 2712
Alignment:
| Q |
426 |
tatatcatgacccattaaaaataaggtgaacgaggaagtaattatgttttagaatattgcaaatttttgttact |
499 |
Q |
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|||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
2639 |
tataccatgatccattaaaaataaggtgaacgaggaactaattatgttttagaatattgcaaattttagttact |
2712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 591 - 661
Target Start/End: Original strand, 173390 - 173460
Alignment:
| Q |
591 |
atctgaattgaatttgaacatttcaaacaactccacaagtttgttatctaaatgtaacaatgatgataata |
661 |
Q |
| |
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||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||| ||||| |
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| T |
173390 |
atctgaattgaatttgaacatttcaaataactcgacaagtttgttatctgaatgtaacaatgatgttaata |
173460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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