View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4812-Insertion-5 (Length: 753)

Name: NF4812-Insertion-5
Description: NF4812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4812-Insertion-5
NF4812-Insertion-5
[»] chr8 (18 HSPs)
chr8 (206-753)||(5920530-5921076)
chr8 (12-138)||(5921143-5921269)
chr8 (555-730)||(5983739-5983911)
chr8 (12-130)||(5949043-5949161)
chr8 (8-130)||(5960308-5960430)
chr8 (12-130)||(5984571-5984689)
chr8 (555-687)||(5948166-5948298)
chr8 (12-129)||(5887180-5887297)
chr8 (8-129)||(5849783-5849904)
chr8 (555-710)||(5959238-5959393)
chr8 (8-129)||(5843041-5843162)
chr8 (555-709)||(5886795-5886949)
chr8 (535-685)||(5842521-5842671)
chr8 (535-685)||(5849231-5849381)
chr8 (359-517)||(42456825-42456983)
chr8 (387-501)||(41581075-41581189)
chr8 (359-406)||(16677124-16677171)
chr8 (395-486)||(31645145-31645236)
[»] chr2 (15 HSPs)
chr2 (359-512)||(5357552-5357705)
chr2 (556-645)||(42788746-42788835)
chr2 (359-516)||(27249739-27249896)
chr2 (410-518)||(25271796-25271904)
chr2 (18-121)||(42788930-42789033)
chr2 (375-514)||(29923843-29923982)
chr2 (359-435)||(42013377-42013453)
chr2 (443-515)||(29699507-29699579)
chr2 (359-405)||(12037306-12037352)
chr2 (375-447)||(14389320-14389393)
chr2 (375-419)||(4964140-4964184)
chr2 (380-499)||(6069134-6069251)
chr2 (359-406)||(29699591-29699638)
chr2 (457-518)||(3848157-3848218)
chr2 (469-514)||(11915371-11915416)
[»] chr6 (7 HSPs)
chr6 (359-514)||(33629362-33629516)
chr6 (456-515)||(2285561-2285620)
chr6 (458-516)||(3445346-3445404)
chr6 (359-515)||(27176962-27177118)
chr6 (375-447)||(33929922-33929994)
chr6 (458-515)||(33900099-33900156)
chr6 (359-518)||(21611017-21611176)
[»] chr7 (5 HSPs)
chr7 (359-516)||(2729785-2729937)
chr7 (457-512)||(28443764-28443819)
chr7 (359-447)||(6687755-6687844)
chr7 (8-49)||(45676080-45676121)
chr7 (408-514)||(7682728-7682834)
[»] chr4 (6 HSPs)
chr4 (359-515)||(18489619-18489774)
chr4 (359-515)||(21512017-21512173)
chr4 (359-523)||(12868429-12868594)
chr4 (359-516)||(24699347-24699504)
chr4 (359-515)||(9672114-9672270)
chr4 (375-516)||(45073218-45073356)
[»] chr3 (5 HSPs)
chr3 (359-514)||(54524940-54525095)
chr3 (359-486)||(39028122-39028249)
chr3 (359-432)||(48723349-48723422)
chr3 (359-518)||(31984362-31984519)
chr3 (359-515)||(51380958-51381110)
[»] chr5 (2 HSPs)
chr5 (359-515)||(10315713-10315869)
chr5 (359-400)||(37283756-37283797)
[»] chr1 (9 HSPs)
chr1 (359-507)||(68900-69046)
chr1 (359-423)||(22023136-22023200)
chr1 (457-515)||(28108185-28108244)
chr1 (457-516)||(36979733-36979792)
chr1 (457-514)||(25992971-25993028)
chr1 (392-435)||(33150390-33150433)
chr1 (359-434)||(46878162-46878237)
chr1 (357-515)||(46915909-46916067)
chr1 (561-645)||(51044664-51044748)


Alignment Details
Target: chr8 (Bit Score: 476; Significance: 0; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 206 - 753
Target Start/End: Complemental strand, 5921076 - 5920530
Alignment:
Q  206 ggagaatagaaattaatattaattaagtgacattattgattatttcgcaactgtttagagaatttaaactccgtctcttaaagctatatgatcaagttct 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5921076 ggagaatagaaattaatattaattaagtgacattattgattatttagcaactgtttagagaatttaaactccgtctcttaaagctatatgatcaagttct 5920977  T
Q  306 taacccatagctgaaatcttatagacatttgtcattatcaaaattaaaaatatttcactcaatgctaggaaacaccagtactttaccaatataatctcat 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5920976 taacccatagctgaaatcttatagacatttgtcattatcaaaattcaaaatgtttcactcaatgctaggaaacaccagtactttaccaatataatctcat 5920877  T
Q  406 cagcagttaactgccgatatattttaaccggcaacaattaacggccaatagacatttacgtcattttctgatgtgtttcagccttgttagaagtgtgaac 505  Q
    | |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||| ||||||| |||||||||||||||||||||    
T  5920876 cggcagttaacttccgatatattttaactggcaacaattaacggccaatagacatttacgtatttttctgctgtgttttagccttgttagaagtgtgaac 5920777  T
Q  506 aacaattttcaaatgtttccagtacttctctcaaaaagatttaaatttgtttggacaggtgggctcagattgccaagcacttacctggaagaacagataa 605  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5920776 aacaattttcaaatgtttccagtaattctctcaaaaagatttaaatttgtttggacaggtgggctcagattgcgaagcacttacctggaagaacagataa 5920677  T
Q  606 tgaggtgaaaaacttttggaattcaaccatgaagaagaaaatcccttctcatggtataattccatctttcaccacattttctaatattcacaccccctac 705  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||    
T  5920676 tgaggtgaaaaacttttggaattcaaccatgaagaagaaaatcccttctcatggtatctttccatctttccccacattttctaatattcacaccccctac 5920577  T
Q  706 aataaaaatattggttctatggaaagtatactcccctataaatgcaaa 753  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||    
T  5920576 aataaaaatattggttctatggaaagtttact-ccctataaatgcaaa 5920530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 12 - 138
Target Start/End: Complemental strand, 5921269 - 5921143
Alignment:
Q  12 agattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagctgcactcattctagaactccacagcattctaggca 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5921269 agattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagctgcactcattctagaactccacagcattctaggca 5921170  T
Q  112 ataggtatattcattacatagctatta 138  Q
    |||||||||||||||||||||||||||    
T  5921169 ataggtatattcattacatagctatta 5921143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 555 - 730
Target Start/End: Complemental strand, 5983911 - 5983739
Alignment:
Q  555 tttggacaggtgggctcagattgccaagcacttacctggaagaacagataatgaggtgaaaaacttttggaattcaaccatgaagaagaaaatcccttct 654  Q
    ||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |    
T  5983911 tttggacagatgggctcagattgcaaaacacttacctggaagaacagataatgaggtgaaaaacttttggaattcaaccataaagaagaaaatcctttgt 5983812  T
Q  655 catggtataattccatctttcaccacattttctaatattcacaccccctacaataaaaatattggttctatggaaa 730  Q
    |||| ||| |||||||||||||||||||||||| | ||||||||||||||| ||   ||||||||||| |||||||    
T  5983811 catgatattattccatctttcaccacattttctgaaattcacaccccctaccat---aatattggttcaatggaaa 5983739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 5949161 - 5949043
Alignment:
Q  12 agattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagctgcactcattctagaactccacagcattctaggca 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||| |||| |||||||||||    
T  5949161 agattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgtagaactacacaacattctaggca 5949062  T
Q  112 ataggtatattcattacat 130  Q
    |||||||||||||||||||    
T  5949061 ataggtatattcattacat 5949043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 8 - 130
Target Start/End: Complemental strand, 5960430 - 5960308
Alignment:
Q  8 ttgtagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagctgcactcattctagaactccacagcattcta 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||| |||||||||||| |||| ||    
T  5960430 ttgtagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcaacaagaagtagcactcattgtagaactccacaacatttta 5960331  T
Q  108 ggcaataggtatattcattacat 130  Q
    |||||||||||||||||||||||    
T  5960330 ggcaataggtatattcattacat 5960308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 5984689 - 5984571
Alignment:
Q  12 agattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagctgcactcattctagaactccacagcattctaggca 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||| |||| |||||||||||    
T  5984689 agattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgtagaactacacaacattctaggca 5984590  T
Q  112 ataggtatattcattacat 130  Q
    |||||||||||||||||||    
T  5984589 ataggtatattcattacat 5984571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 555 - 687
Target Start/End: Complemental strand, 5948298 - 5948166
Alignment:
Q  555 tttggacaggtgggctcagattgccaagcacttacctggaagaacagataatgaggtgaaaaacttttggaattcaaccatgaagaagaaaatcccttct 654  Q
    ||||||||| |||||||| ||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||| ||||||| ||||    
T  5948298 tttggacagatgggctcaaattgcaaagcacttacctggaagaacagataatgagataaaaaacttttggaattcaaccataaagaaaaaaatcctttct 5948199  T
Q  655 catggtataattccatctttcaccacattttct 687  Q
    |||||||| ||||||||||||||||||||||||    
T  5948198 catggtattattccatctttcaccacattttct 5948166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 12 - 129
Target Start/End: Complemental strand, 5887297 - 5887180
Alignment:
Q  12 agattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagctgcactcattctagaactccacagcattctaggca 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||| |||| |||||||||||    
T  5887297 agattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgtagaactacacaacattctaggca 5887198  T
Q  112 ataggtatattcattaca 129  Q
    |||||||||| |||||||    
T  5887197 ataggtatatccattaca 5887180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 5849904 - 5849783
Alignment:
Q  8 ttgtagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagctgcactcattctagaactccacagcattcta 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||  ||| ||||| ||||||| ||||||||||||    
T  5849904 ttgtagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctcttatgaagaagtagcaatcattatagaactacacagcattcta 5849805  T
Q  108 ggcaataggtatattcattaca 129  Q
    |||||||||||||| |||||||    
T  5849804 ggcaataggtatatccattaca 5849783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 555 - 710
Target Start/End: Complemental strand, 5959393 - 5959238
Alignment:
Q  555 tttggacaggtgggctcagattgccaagcacttacctggaagaacagataatgaggtgaaaaacttttggaattcaaccatgaagaagaaaatcccttct 654  Q
    ||||||||| |||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| | ||||    
T  5959393 tttggacagatgggctcagattgcaaaacacttaactggaagaacagataatgaggtgaaaaacttttggaattctaccataaagaagaaaattcattct 5959294  T
Q  655 catggtataattccatctttcaccacattttctaatattcacaccccctacaataa 710  Q
    || | ||| | ||||||||||| |||||||||| || |||||||||| ||| ||||    
T  5959293 cacgatattactccatctttcatcacattttctgatgttcacaccccataccataa 5959238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 5843162 - 5843041
Alignment:
Q  8 ttgtagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagctgcactcattctagaactccacagcattcta 107  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||  ||| ||||| ||||||| ||||||||||||    
T  5843162 ttgtagattaagatggataaattatctaagacctgatttaaaacgtggaagtttctcttatgaagaagtagcaatcattatagaactacacagcattcta 5843063  T
Q  108 ggcaataggtatattcattaca 129  Q
    |||||||||||||| |||||||    
T  5843062 ggcaataggtatatccattaca 5843041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 555 - 709
Target Start/End: Complemental strand, 5886949 - 5886795
Alignment:
Q  555 tttggacaggtgggctcagattgccaagcacttacctggaagaacagataatgaggtgaaaaacttttggaattcaaccatgaagaagaaaatcccttct 654  Q
    ||||||||| ||||| || ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||| ||| ||  ||||    
T  5886949 tttggacagatgggcacaaattgctaagcacttaccaggaagaacggataatgaggtgaaaaacttttggaattcaagcatgaagaaaaaactcatttct 5886850  T
Q  655 catggtataattccatctttcaccacattttctaatattcacaccccctacaata 709  Q
     ||| ||   |||||||||||||| |||||| | ||||||||| |||||||||||    
T  5886849 tatgataatgttccatctttcaccccattttatgatattcacatcccctacaata 5886795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 535 - 685
Target Start/End: Complemental strand, 5842671 - 5842521
Alignment:
Q  535 ctcaaaaagatttaaatttgtttggacaggtgggctcagattgccaagcacttacctggaagaacagataatgaggtgaaaaacttttggaattcaacca 634  Q
    ||||| ||| |||||| |||||||||||| ||||| || ||||||||| |||| || |||||||| ||||||||||||||||||||||||||||||| ||    
T  5842671 ctcaacaaggtttaaacttgtttggacagatgggcacaaattgccaagtacttgccaggaagaaccgataatgaggtgaaaaacttttggaattcaagca 5842572  T
Q  635 tgaagaagaaaatcccttctcatggtataattccatctttcaccacatttt 685  Q
    | ||||| ||| ||| |||| ||| |||  ||||||| |||||| ||||||    
T  5842571 taaagaaaaaactcctttctgatgatattgttccatccttcaccccatttt 5842521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 535 - 685
Target Start/End: Complemental strand, 5849381 - 5849231
Alignment:
Q  535 ctcaaaaagatttaaatttgtttggacaggtgggctcagattgccaagcacttacctggaagaacagataatgaggtgaaaaacttttggaattcaacca 634  Q
    ||||| ||| |||||| |||||||||||| ||||| || ||| |||||||||| || |||||||| ||||||||||||||||||||||||||||||| ||    
T  5849381 ctcaacaaggtttaaacttgtttggacagatgggcacaaattaccaagcacttgccaggaagaacggataatgaggtgaaaaacttttggaattcaagca 5849282  T
Q  635 tgaagaagaaaatcccttctcatggtataattccatctttcaccacatttt 685  Q
    | ||||| ||| ||| |||| ||| |||  ||||||| |||||| ||||||    
T  5849281 taaagaaaaaactcctttctgatgatattgttccatccttcaccccatttt 5849231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 359 - 517
Target Start/End: Complemental strand, 42456983 - 42456825
Alignment:
Q  359 ttcactcaatgctaggaaacaccagtactttaccaatataatctcatcagcagttaactgccgatatattttaaccggcaacaattaacggccaatagac 458  Q
    |||||| |||||||||||||||||||| ||||||||||||| |||||| | | ||| |||  |||  |||||||||| |   | ||||  | | || |||    
T  42456983 ttcacttaatgctaggaaacaccagtaatttaccaatataacctcatcggtaattagctgttgatggattttaaccgacggtagttaattgtcgatggac 42456884  T
Q  459 atttacgtcattttctgatgtgtttcagccttgttagaagtgtgaacaacaattttcaa 517  Q
    | ||||||| ||||||||||| |||||||||||||||||||||  ||| ||||||||||    
T  42456883 aattacgtctttttctgatgtatttcagccttgttagaagtgtatacagcaattttcaa 42456825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 387 - 501
Target Start/End: Original strand, 41581075 - 41581189
Alignment:
Q  387 tttaccaatataatctcatcagcagttaactgccgatatattttaaccggcaacaattaacggccaatagacatttacgtcattttctgatgtgtttcag 486  Q
    |||| ||||||||  |||||| ||||||||| |||||  ||||||| |  | ||| ||||| | | || |||||||||||| ||||||  ||||||||||    
T  41581075 tttatcaatataacttcatcaacagttaactaccgatgaattttaatctacgacacttaactgtcgatggacatttacgtctttttctagtgtgtttcag 41581174  T
Q  487 ccttgttagaagtgt 501  Q
    ||||||| |||||||    
T  41581175 ccttgtttgaagtgt 41581189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 359 - 406
Target Start/End: Complemental strand, 16677171 - 16677124
Alignment:
Q  359 ttcactcaatgctaggaaacaccagtactttaccaatataatctcatc 406  Q
    ||||||||||||||||||||||||||| |||||| | |||| ||||||    
T  16677171 ttcactcaatgctaggaaacaccagtaatttacctacataacctcatc 16677124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 395 - 486
Target Start/End: Original strand, 31645145 - 31645236
Alignment:
Q  395 tataatctcatcagcagttaactgccgatatattttaaccggcaacaattaacggccaatagacatttacgtcattttctgatgtgtttcag 486  Q
    ||||| |||||| ||| ||||||||||||  |||||||||| |  || ||||| ||| || | ||||||| |||||||||| ||||||||||    
T  31645145 tataacctcatcggcacttaactgccgatggattttaaccgacggcagttaactgccgatggtcatttacttcattttctggtgtgtttcag 31645236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 4e-31; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 359 - 512
Target Start/End: Complemental strand, 5357705 - 5357552
Alignment:
Q  359 ttcactcaatgctaggaaacaccagtactttaccaatataatctcatcagcagttaactgccgatatattttaaccggcaacaattaacggccaatagac 458  Q
    ||||||||||| |   |||||| |||| ||||||||||||| |||||| ||||||||||| ||||  | |||||||||||||| ||||| | | || |||    
T  5357705 ttcactcaatgttgaaaaacactagtaatttaccaatataacctcatcggcagttaactgtcgatggaatttaaccggcaacagttaactgtcgatggac 5357606  T
Q  459 atttacgtcattttctgatgtgtttcagccttgttagaagtgtgaacaacaatt 512  Q
    ||||||||| ||||||  |||||||||||||||||||||||||||||| |||||    
T  5357605 atttacgtctttttctagtgtgtttcagccttgttagaagtgtgaacaccaatt 5357552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 556 - 645
Target Start/End: Complemental strand, 42788835 - 42788746
Alignment:
Q  556 ttggacaggtgggctcagattgccaagcacttacctggaagaacagataatgaggtgaaaaacttttggaattcaaccatgaagaagaaa 645  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||| |||||||||||||||| ||| |||||||||    
T  42788835 ttggacaggtgggctcagatagcaaagcatttaccaggaagaacagataatgaggtgaagaacttttggaattcaagcataaagaagaaa 42788746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 359 - 516
Target Start/End: Complemental strand, 27249896 - 27249739
Alignment:
Q  359 ttcactcaatgctaggaaacaccagtactttaccaatataatctcatcagcagttaactgccgatatattttaaccggcaacaattaacggccaatagac 458  Q
    ||||||||||| |||||||||| |||| |||| ||||||||  |||||| ||||||||  |||||  |||||||| |||  || ||||| ||| || |||    
T  27249896 ttcactcaatgttaggaaacactagtaatttatcaatataacttcatcatcagttaaccaccgatggattttaacaggcggcagttaactgccgatggac 27249797  T
Q  459 atttacgtcattttctgatgtgtttcagccttgttagaagtgtgaacaacaattttca 516  Q
    |||||| || ||||| | ||||||||||||||||| |||||||  |||||||||||||    
T  27249796 atttacatctttttccggtgtgtttcagccttgtttgaagtgtatacaacaattttca 27249739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 410 - 518
Target Start/End: Original strand, 25271796 - 25271904
Alignment:
Q  410 agttaactgccgatatattttaaccggcaacaattaacggccaatagacatttacgtcattttctgatgtgtttcagccttgttagaagtgtgaacaaca 509  Q
    ||||||||||||||  ||||||| | ||  || ||||| ||| |||||| |||||||| ||||||||||||||||||||||||| ||||||| |||||||    
T  25271796 agttaactgccgatgaattttaaacagcggcagttaaccgccgatagacctttacgtctttttctgatgtgtttcagccttgtttgaagtgtaaacaaca 25271895  T
Q  510 attttcaaa 518  Q
    |||||||||    
T  25271896 attttcaaa 25271904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 42789033 - 42788930
Alignment:
Q  18 agatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagctgcactcattctagaactccacagcattctaggcaataggt 117  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||  ||||||||||| || ||| | ||||| || | ||||||||| || ||||    
T  42789033 agatggataaattatttaagacctgatttgaaacgtggaagtttttctccacaagaagctgctcttattattgaacttcataccattctaggaaacaggt 42788934  T
Q  118 atat 121  Q
    ||||    
T  42788933 atat 42788930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 375 - 514
Target Start/End: Complemental strand, 29923982 - 29923843
Alignment:
Q  375 aaacaccagtactttaccaatataatctcatcagcagttaactgccgatatattttaaccggcaacaattaacggccaatagacatttacgtcattttct 474  Q
    ||||||||||| ||||| ||||||| |||||| |||||||| ||| |||  ||||||||||||  || ||||| | | ||| ||||||| ||| ||||||    
T  29923982 aaacaccagtaatttactaatataacctcatcggcagttaattgctgatggattttaaccggcggcagttaactgtcgataaacatttatgtctttttct 29923883  T
Q  475 gatgtgtttcagccttgttagaagtgtgaacaacaatttt 514  Q
    | |||||||||||||| | | | ||||  |||||||||||    
T  29923882 gttgtgtttcagccttatcacatgtgtatacaacaatttt 29923843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 359 - 435
Target Start/End: Original strand, 42013377 - 42013453
Alignment:
Q  359 ttcactcaatgctaggaaacaccagtactttaccaatataatctcatcagcagttaactgccgatatattttaaccg 435  Q
    ||||||||||||||||||||||||||| |||| |||| ||||||||    |||||||||| ||||| ||||||||||    
T  42013377 ttcactcaatgctaggaaacaccagtaatttatcaatttaatctcaatgacagttaactgtcgataaattttaaccg 42013453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 443 - 515
Target Start/End: Complemental strand, 29699579 - 29699507
Alignment:
Q  443 ttaacggccaatagacatttacgtcattttctgatgtgtttcagccttgttagaagtgtgaacaacaattttc 515  Q
    ||||| ||| || |||||||||||| ||||||| ||||||||||||||||||||| | |||| | ||||||||    
T  29699579 ttaactgccgatggacatttacgtctttttctggtgtgtttcagccttgttagaaatatgaataccaattttc 29699507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 359 - 405
Target Start/End: Original strand, 12037306 - 12037352
Alignment:
Q  359 ttcactcaatgctaggaaacaccagtactttaccaatataatctcat 405  Q
    ||||||||||||||||||||||||||| |||| |||||||| |||||    
T  12037306 ttcactcaatgctaggaaacaccagtaatttatcaatataacctcat 12037352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 375 - 447
Target Start/End: Original strand, 14389320 - 14389393
Alignment:
Q  375 aaacaccagtactttaccaatataatctcatcagcagttaactgccgatata-ttttaaccggcaacaattaac 447  Q
    ||||||||||| ||||| ||||||| |||||||| ||||||||||||||  | |||||||||||| || |||||    
T  14389320 aaacaccagtaatttactaatataacctcatcagtagttaactgccgattgatttttaaccggcagcagttaac 14389393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 375 - 419
Target Start/End: Complemental strand, 4964184 - 4964140
Alignment:
Q  375 aaacaccagtactttaccaatataatctcatcagcagttaactgc 419  Q
    ||||||||||| ||||| |||||||||||||| ||||||||||||    
T  4964184 aaacaccagtaatttactaatataatctcatcggcagttaactgc 4964140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 380 - 499
Target Start/End: Complemental strand, 6069251 - 6069134
Alignment:
Q  380 ccagtactttaccaatataatctcatcagcagttaactgccgatatattttaaccggcaacaattaacggccaatagacatttacgtcattttctgatgt 479  Q
    |||||| |||| |||||||||||||||  |||||||||||||||  |||||||||| |   ||||||| ||| ||| | |||||| |  |||| |  |||    
T  6069251 ccagtaatttatcaatataatctcatcgacagttaactgccgatgaattttaaccgacggtaattaactgccgataaaaatttacat--tttttttgtgt 6069154  T
Q  480 gtttcagccttgttagaagt 499  Q
    ||||||||||| ||||||||    
T  6069153 gtttcagccttcttagaagt 6069134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 359 - 406
Target Start/End: Complemental strand, 29699638 - 29699591
Alignment:
Q  359 ttcactcaatgctaggaaacaccagtactttaccaatataatctcatc 406  Q
    ||||||||||| |||||||||| |||| ||||||||||||| ||||||    
T  29699638 ttcactcaatgttaggaaacactagtaatttaccaatataacctcatc 29699591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 457 - 518
Target Start/End: Original strand, 3848157 - 3848218
Alignment:
Q  457 acatttacgtcattttctgatgtgtttcagccttgttagaagtgtgaacaacaattttcaaa 518  Q
    ||||||| ||| ||||||||||||||||||| ||  || ||||||||| ||||||| |||||    
T  3848157 acatttatgtctttttctgatgtgtttcagctttcataaaagtgtgaataacaattctcaaa 3848218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 469 - 514
Target Start/End: Complemental strand, 11915416 - 11915371
Alignment:
Q  469 ttttctgatgtgtttcagccttgttagaagtgtgaacaacaatttt 514  Q
    ||||||| |||||||||| ||||||||||||||| ||| |||||||    
T  11915416 ttttctggtgtgtttcagtcttgttagaagtgtgtacaccaatttt 11915371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 3e-25; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 359 - 514
Target Start/End: Original strand, 33629362 - 33629516
Alignment:
Q  359 ttcactcaatgctaggaaacaccagtactttaccaatataatctcatcagcagttaactgccgatatattttaaccggcaacaattaacggccaatagac 458  Q
    |||||||||||||||||||||  |||| |||||||||||||||||||||  | |||||||| |||  |||||  |||    || ||||| | |  |||||    
T  33629362 ttcactcaatgctaggaaacaatagtaatttaccaatataatctcatcaata-ttaactgctgattgatttttgccgatggcagttaactgacgctagac 33629460  T
Q  459 atttacgtcattttctgatgtgtttcagccttgttagaagtgtgaacaacaatttt 514  Q
    ||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||    
T  33629461 atttacgtctttttctgatgtgtttcagccttgttaaaagtgcgaacaacaatttt 33629516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 456 - 515
Target Start/End: Complemental strand, 2285620 - 2285561
Alignment:
Q  456 gacatttacgtcattttctgatgtgtttcagccttgttagaagtgtgaacaacaattttc 515  Q
    |||||||||||| |||||| |||||||||| ||||||| |||||||||||| ||||||||    
T  2285620 gacatttacgtctttttctaatgtgtttcaaccttgtttgaagtgtgaacagcaattttc 2285561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 458 - 516
Target Start/End: Complemental strand, 3445404 - 3445346
Alignment:
Q  458 catttacgtcattttctgatgtgtttcagccttgttagaagtgtgaacaacaattttca 516  Q
    |||||||||| |||||| |||||||||||||||||| || || ||||||||||||||||    
T  3445404 catttacgtctttttctaatgtgtttcagccttgtttgaggtatgaacaacaattttca 3445346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 359 - 515
Target Start/End: Original strand, 27176962 - 27177118
Alignment:
Q  359 ttcactcaatgctaggaaacaccagtactttaccaatataatctcatcagcagttaactgccgatatattttaaccggcaacaattaacggccaatagac 458  Q
    |||||||||| |||  ||||| ||||| ||||  ||||||| |||||| ||||||||||  ||||  ||||||| ||||  || ||||| | | ||  ||    
T  27176962 ttcactcaatactaaaaaacatcagtaatttattaatataacctcatcggcagttaactatcgatgaattttaatcggcggcagttaactgtcgatgaac 27177061  T
Q  459 atttacgtcattttctgatgtgtttcagccttgttagaagtgtgaacaacaattttc 515  Q
    ||||||||| |||||| ||||||||||  ||||||||||| ||  ||| ||||||||    
T  27177062 atttacgtctttttctaatgtgtttcaatcttgttagaagcgtacacaccaattttc 27177118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 375 - 447
Target Start/End: Complemental strand, 33929994 - 33929922
Alignment:
Q  375 aaacaccagtactttaccaatataatctcatcagcagttaactgccgatatattttaaccggcaacaattaac 447  Q
    ||||||||||| |||| ||||||| ||||||| | ||||||||||||||  |||||||||||||  |||||||    
T  33929994 aaacaccagtaatttatcaatatactctcatcggtagttaactgccgatggattttaaccggcagtaattaac 33929922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 458 - 515
Target Start/End: Complemental strand, 33900156 - 33900099
Alignment:
Q  458 catttacgtcattttctgatgtgtttcagccttgttagaagtgtgaacaacaattttc 515  Q
    |||||||||| ||||||| |||||||| || ||||| ||||||| |||||||||||||    
T  33900156 catttacgtctttttctggtgtgtttcggcattgtttgaagtgtaaacaacaattttc 33900099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 359 - 518
Target Start/End: Original strand, 21611017 - 21611176
Alignment:
Q  359 ttcactcaatgctaggaaacaccagtactttaccaatataatctcatcagcagttaactgccgatatattttaaccggcaacaattaacggccaatagac 458  Q
    |||||||||| |||| ||| || |||| |||| ||||||||  | ||| | |||||||  |||||  |||||||||| | ||| |||||   | ||  ||    
T  21611017 ttcactcaatactagaaaatactagtaatttatcaatataactttatcggtagttaacaaccgatgaattttaaccgacgacagttaactatcgatgaac 21611116  T
Q  459 atttacgtcattttctgatgtgtttcagccttgttagaagtgtgaacaacaattttcaaa 518  Q
    ||||||||| |||||| ||||||||||||| ||||  || |||||| | |||||||||||    
T  21611117 atttacgtctttttctaatgtgtttcagccatgtttaaaatgtgaaaatcaattttcaaa 21611176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 5e-24; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 359 - 516
Target Start/End: Complemental strand, 2729937 - 2729785
Alignment:
Q  359 ttcactcaatgctaggaaacaccagtactttaccaatataatctcatcagcagttaactgccgatatattttaaccggcaacaattaacggccaatagac 458  Q
    ||||||||||||||||||||||||||||     |||||||| ||||||  | |||||||  ||||  |||||||| ||   || ||||| ||| || |||    
T  2729937 ttcactcaatgctaggaaacaccagtac-----caatataacctcatcgactgttaactatcgatggattttaactggtggcagttaactgccgatggac 2729843  T
Q  459 atttacgtcattttctgatgtgtttcagccttgttagaagtgtgaacaacaattttca 516  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||| | |||||||||    
T  2729842 atttacgtctttttctgttgtgtttcagccttgttagaagtgtgaatatcaattttca 2729785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 457 - 512
Target Start/End: Original strand, 28443764 - 28443819
Alignment:
Q  457 acatttacgtcattttctgatgtgtttcagccttgttagaagtgtgaacaacaatt 512  Q
    ||||||||||| ||||||  ||||||||||||||||| ||||||||||||||||||    
T  28443764 acatttacgtctttttctagtgtgtttcagccttgtttgaagtgtgaacaacaatt 28443819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 359 - 447
Target Start/End: Complemental strand, 6687844 - 6687755
Alignment:
Q  359 ttcactcaatgctaggaaacaccagtactttaccaatataatctcatcagcagttaactgccgat-atattttaaccggcaacaattaac 447  Q
    ||||||||||| | ||||||||||| | |||||| ||||||| ||||| ||| |||||||||||| |  ||||||||||| ||| |||||    
T  6687844 ttcactcaatgatgggaaacaccagcaatttacctatataatttcatcggcaattaactgccgatgaatttttaaccggcgacagttaac 6687755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 45676121 - 45676080
Alignment:
Q  8 ttgtagattaagatggataaattatctaagacctgatttgaa 49  Q
    ||||||||| |||||||||||||||||||| |||||||||||    
T  45676121 ttgtagattgagatggataaattatctaaggcctgatttgaa 45676080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 408 - 514
Target Start/End: Original strand, 7682728 - 7682834
Alignment:
Q  408 gcagttaactgccgatatattttaaccggcaacaattaacggccaatagacatttacgtcattttctgatgtgtttcagccttgttagaagtgtgaacaa 507  Q
    |||||||||||  |||  |||||||| |||| || |||||  |||||  | |||||  || |||| ||||||||||||||||| |||||||||| ||||     
T  7682728 gcagttaactgttgatggattttaactggcagcagttaactaccaatgaatatttaaatctttttttgatgtgtttcagccttattagaagtgtaaacag 7682827  T
Q  508 caatttt 514  Q
    |||||||    
T  7682828 caatttt 7682834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 359 - 515
Target Start/End: Original strand, 18489619 - 18489774
Alignment:
Q  359 ttcactcaatgctaggaaacaccagtactttaccaatataatctcatcagcagttaactgccgatatattttaaccggcaacaattaacggccaatagac 458  Q
    ||||||||||| || ||||||| |||| |||||||||||||| ||||| |||||||||||| |||  |||||||||| |  || ||||| |   ||||||    
T  18489619 ttcactcaatgttaagaaacactagtaatttaccaatataatttcatcggcagttaactgctgatggattttaaccgacggcagttaactg-tgatagac 18489717  T
Q  459 atttacgtcattttctgatgtgtttcagccttgttagaagtgtgaacaacaattttc 515  Q
    ||||| ||| ||||||| ||| ||||| ||||||||||||||| |||| ||||||||    
T  18489718 atttatgtctttttctggtgtatttcaaccttgttagaagtgttaacatcaattttc 18489774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 359 - 515
Target Start/End: Original strand, 21512017 - 21512173
Alignment:
Q  359 ttcactcaatgctaggaaacaccagtactttaccaatataatctcatcagcagttaactgccgatatattttaaccggcaacaattaacggccaatagac 458  Q
    |||||||||||||||||||||| | || |||| ||||||||  | ||| |||||||||||  |||  ||||||||||||  || ||||| ||  || |||    
T  21512017 ttcactcaatgctaggaaacactactaatttatcaatataactttatcggcagttaactgttgatcaattttaaccggctgcagttaactgctgatggac 21512116  T
Q  459 atttacgtcattttctgatgtgtttcagccttgttagaagtgtgaacaacaattttc 515  Q
    ||||||||| ||||||| ||||||||| |||||||  |||||| |||||||||||||    
T  21512117 atttacgtctttttctggtgtgtttcatccttgtttaaagtgtcaacaacaattttc 21512173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 359 - 523
Target Start/End: Original strand, 12868429 - 12868594
Alignment:
Q  359 ttcactcaatgctaggaaacaccagtactttaccaatataatctcatcagcagttaactgccgatatattttaaccggcaacaattaacggccaatagac 458  Q
    ||||||||||| ||| |||||  |||| |||| |||||||||||||||| ||||||||| |||||  |||| ||||| | ||| ||||| | | ||| ||    
T  12868429 ttcactcaatgttagaaaacattagtaatttatcaatataatctcatcatcagttaactaccgatgaatttaaaccgacgacagttaactgtcgataaac 12868528  T
Q  459 atttacgtcattttctgatgtgtttcagccttgttagaagtgtgaacaacaattttc-aaatgttt 523  Q
    || |||||  ||| ||| ||||||| ||| ||||||||||| ||||||||||||||| ||||||||    
T  12868529 atgtacgtgttttactggtgtgttttagctttgttagaagtatgaacaacaattttctaaatgttt 12868594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 359 - 516
Target Start/End: Complemental strand, 24699504 - 24699347
Alignment:
Q  359 ttcactcaatgctaggaaacaccagtactttaccaatataatctcatcagcagttaactgccgatatattttaaccggcaacaattaacggccaatagac 458  Q
    |||| ||||| ||||||||||| |||| |||| ||| ||||  ||||| | ||||||||||||||  |||||||| |||  || ||||| | | || |||    
T  24699504 ttcaatcaattctaggaaacactagtaatttatcaacataacatcatcggtagttaactgccgatggattttaactggcggcagttaactggcgatggac 24699405  T
Q  459 atttacgtcattttctgatgtgtttcagccttgttagaagtgtgaacaacaattttca 516  Q
    ||||||||| ||||||| | ||||| |||| |||| ||| ||| ||||||||||||||    
T  24699404 atttacgtctttttctggtatgttttagccctgtttgaattgtaaacaacaattttca 24699347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 359 - 515
Target Start/End: Original strand, 9672114 - 9672270
Alignment:
Q  359 ttcactcaatgctaggaaacaccagtactttaccaatataatctcatcagcagttaactgccgatatattttaaccggcaacaattaacggccaatagac 458  Q
    |||||| |||||||||||| |   ||| ||| |||||||||  ||||| ||||||||| | | ||  |||||||||| | ||| |||||  || || | |    
T  9672114 ttcacttaatgctaggaaatattggtaatttcccaatataacttcatcggcagttaacagtcaatggattttaaccgacgacagttaactaccgatgggc 9672213  T
Q  459 atttacgtcattttctgatgtgtttcagccttgttagaagtgtgaacaacaattttc 515  Q
    |||| |||| ||||||||||||||||||| ||||||||| |||||||| ||||||||    
T  9672214 attttcgtctttttctgatgtgtttcagcattgttagaactgtgaacatcaattttc 9672270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 516
Target Start/End: Original strand, 45073218 - 45073356
Alignment:
Q  375 aaacaccagtactttaccaatataatctcatcagcagttaactgccgatatattttaaccggcaacaattaacggccaatagacatttacgtcattttct 474  Q
    ||||||||||| ||||||||||||| || |||  ||||||||   ||||  ||||||||||||  || ||||| ||| || ||||||||| || ||||||    
T  45073218 aaacaccagtaatttaccaatataaccttatcgacagttaac---cgatggattttaaccggcggcagttaactgccgatggacatttacatctttttct 45073314  T
Q  475 gatgtgtttcagccttgttagaagtgtgaacaacaattttca 516  Q
      ||||||||| |||| | | | ||||  |||||||||||||    
T  45073315 agtgtgtttcaaccttatcacatgtgtatacaacaattttca 45073356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 8e-23; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 359 - 514
Target Start/End: Original strand, 54524940 - 54525095
Alignment:
Q  359 ttcactcaatgctaggaaacaccagtactttaccaatataatctcatcagcagttaactgccgatatattttaaccggcaacaattaacggccaatagac 458  Q
    ||||||||||| ||||||| || |||  ||||| ||||||| |||||| |||||||||||  |||  | ||||||||||  || ||||| ||||||||||    
T  54524940 ttcactcaatgttaggaaatactagttatttactaatataacctcatcggcagttaactgttgatggaatttaaccggcggcagttaactgccaatagac 54525039  T
Q  459 atttacgtcattttctgatgtgtttcagccttgttagaagtgtgaacaacaatttt 514  Q
    |||||||   ||||||| |||||||||||||| ||||||||||  |||| ||||||    
T  54525040 atttacgattttttctggtgtgtttcagccttcttagaagtgtatacaataatttt 54525095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 359 - 486
Target Start/End: Original strand, 39028122 - 39028249
Alignment:
Q  359 ttcactcaatgctaggaaacaccagtactttaccaatataatctcatcagcagttaactgccgatatattttaaccggcaacaattaacggccaatagac 458  Q
    |||| |||||||||| |||||| |||| ||||| ||||||| || ||| ||| ||||||| ||||  ||||||||||||  || ||||| ||| ||  ||    
T  39028122 ttcaatcaatgctagaaaacactagtaatttacaaatataaccttatcggcaattaactgtcgatgaattttaaccggcggcagttaactgccgatgaac 39028221  T
Q  459 atttacgtcattttctgatgtgtttcag 486  Q
    ||||||||| ||||||| ||||||||||    
T  39028222 atttacgtctttttctggtgtgtttcag 39028249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 359 - 432
Target Start/End: Original strand, 48723349 - 48723422
Alignment:
Q  359 ttcactcaatgctaggaaacaccagtactttaccaatataatctcatcagcagttaactgccgatatattttaa 432  Q
    |||||||||||||| |||||||  ||| |||||||||||||||||||| |||| ||||||| |||| |||||||    
T  48723349 ttcactcaatgctatgaaacactggtaatttaccaatataatctcatcggcagataactgctgatacattttaa 48723422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 359 - 518
Target Start/End: Complemental strand, 31984519 - 31984362
Alignment:
Q  359 ttcactcaatgctaggaaacaccagtactttaccaatataatctcatcagcagttaactgccgatatattttaaccggcaacaattaacggccaatagac 458  Q
    |||||||||||||||||||||||| || ||||| |||||||  ||||  ||||||||| ||||||  ||||||||||||  || ||||| ||  || |||    
T  31984519 ttcactcaatgctaggaaacacca-taatttacaaatataacatcataggcagttaaccgccgatgaattttaaccggcggcagttaactgctgatggac 31984421  T
Q  459 atttacgtcattttctgatgtgtttcagccttgttagaagtgtgaacaacaattttcaaa 518  Q
    ||||| ||  ||||||| | | ||||| ||||||| ||||||| ||||  ||||||||||    
T  31984420 atttatgt-tttttctggtatatttcaaccttgtttgaagtgtaaacagtaattttcaaa 31984362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 359 - 515
Target Start/End: Original strand, 51380958 - 51381110
Alignment:
Q  359 ttcactcaatgctaggaaacaccagtactttaccaatataatctcatcagcagttaactgccgatatattttaaccggcaacaattaacggccaatagac 458  Q
    |||||||||||||||||||||| |||| |||| ||||||||  ||||| | ||||||| | ||||  |||||||| |||  || |||||     || | |    
T  51380958 ttcactcaatgctaggaaacactagtaatttatcaatataacatcatcggtagttaacagtcgatggattttaactggcggcagttaact----atgggc 51381053  T
Q  459 atttacgtcattttctgatgtgtttcagccttgttagaagtgtgaacaacaattttc 515  Q
     |||||||| ||||||| ||||||||||||||||| ||||||| |||  ||||||||    
T  51381054 gtttacgtctttttctggtgtgtttcagccttgtttgaagtgtaaacggcaattttc 51381110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 359 - 515
Target Start/End: Original strand, 10315713 - 10315869
Alignment:
Q  359 ttcactcaatgctaggaaacaccagtactttaccaatataatctcatcagcagttaactgccgatatattttaaccggcaacaattaacggccaatagac 458  Q
    |||||||||||||  ||||||||| || ||||| ||||||| |||||| ||||||||||||||||| ||||||||  ||  |||||||| ||| || | |    
T  10315713 ttcactcaatgctgagaaacaccaataatttactaatataacctcatcggcagttaactgccgataaattttaacacgcggcaattaactgccgatgggc 10315812  T
Q  459 atttacgtcattttctgatgtgtttcagccttgttagaagtgtgaacaacaattttc 515  Q
    ||||||||| ||||||||| |  |||||||||  | |||||||  ||| ||||||||    
T  10315813 atttacgtctttttctgatataattcagccttagttgaagtgtctacagcaattttc 10315869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 359 - 400
Target Start/End: Complemental strand, 37283797 - 37283756
Alignment:
Q  359 ttcactcaatgctaggaaacaccagtactttaccaatataat 400  Q
    |||||||||||||||||||||| |||| |||| |||||||||    
T  37283797 ttcactcaatgctaggaaacacgagtaatttatcaatataat 37283756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 359 - 507
Target Start/End: Complemental strand, 69046 - 68900
Alignment:
Q  359 ttcactcaatgctaggaaacaccagtactttaccaatataatctcatcagcagttaactgccgatatattttaaccggcaacaattaacggccaatagac 458  Q
    ||||||||||||||||| |||| |||| |||| ||||||||  ||||| | |||||| ||  |||  |||||||||| | ||| ||||| | | ||||||    
T  69046 ttcactcaatgctaggacacactagtaatttatcaatataacatcatcggtagttaagtg-tgatgaattttaaccgacgacagttaactgtcgatagac 68948  T
Q  459 atttacgtcattttctgatgtgtttcagccttgttagaagtgtgaacaa 507  Q
    ||||||||| ||||||  ||||||||||  |||||||||||||||||||    
T  68947 atttacgtc-ttttctagtgtgtttcagttttgttagaagtgtgaacaa 68900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 359 - 423
Target Start/End: Original strand, 22023136 - 22023200
Alignment:
Q  359 ttcactcaatgctaggaaacaccagtactttaccaatataatctcatcagcagttaactgccgat 423  Q
    ||||||||||||| | ||||||||||| |||||| |||||| |||||| ||||||||||||||||    
T  22023136 ttcactcaatgctggaaaacaccagtaatttacctatataacctcatcggcagttaactgccgat 22023200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 457 - 515
Target Start/End: Original strand, 28108185 - 28108244
Alignment:
Q  457 acatttacgtcatttt-ctgatgtgtttcagccttgttagaagtgtgaacaacaattttc 515  Q
    ||||||||||| |||| ||| | |||||||||||||||||||||||||||||||||||||    
T  28108185 acatttacgtcttttttctggtttgtttcagccttgttagaagtgtgaacaacaattttc 28108244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 457 - 516
Target Start/End: Complemental strand, 36979792 - 36979733
Alignment:
Q  457 acatttacgtcattttctgatgtgtttcagccttgttagaagtgtgaacaacaattttca 516  Q
    ||||||||||| ||||||| ||||||||||| |||||||||| ||||| |||||||||||    
T  36979792 acatttacgtctttttctggtgtgtttcagctttgttagaagcgtgaaaaacaattttca 36979733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 457 - 514
Target Start/End: Complemental strand, 25993028 - 25992971
Alignment:
Q  457 acatttacgtcattttctgatgtgtttcagccttgttagaagtgtgaacaacaatttt 514  Q
    ||||||||||| ||||||||||| |||||| |||||| |||||||||||| |||||||    
T  25993028 acatttacgtctttttctgatgtatttcagacttgtttgaagtgtgaacatcaatttt 25992971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 392 - 435
Target Start/End: Complemental strand, 33150433 - 33150390
Alignment:
Q  392 caatataatctcatcagcagttaactgccgatatattttaaccg 435  Q
    |||||||| |||||||||||||||||||| ||||||||||||||    
T  33150433 caatataacctcatcagcagttaactgccaatatattttaaccg 33150390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 359 - 434
Target Start/End: Original strand, 46878162 - 46878237
Alignment:
Q  359 ttcactcaatgctaggaaacaccagtactttaccaatataatctcatcagcagttaactgccgatatattttaacc 434  Q
    |||||||||||||||||||||||| || ||||  |||||||||| ||| ||||||||||  ||||  |||||||||    
T  46878162 ttcactcaatgctaggaaacaccaataatttataaatataatcttatcggcagttaactatcgatgaattttaacc 46878237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 357 - 515
Target Start/End: Complemental strand, 46916067 - 46915909
Alignment:
Q  357 atttcactcaatgctaggaaacaccagtactttaccaatataatctcatcagcagttaactgccgatatattttaaccggcaacaattaacggccaatag 456  Q
    ||||||||| ||| ||||||||||||||| ||||||||||| || ||||| |||||||||||| |||  |||| || ||  |||| ||||| | | ||      
T  46916067 atttcactcgatgataggaaacaccagtaatttaccaatat-atttcatcggcagttaactgcagatggatttcaatcgaaaacagttaactgtcgatga 46915969  T
Q  457 acatttacgtc-attttctgatgtgtttcagccttgttagaagtgtgaacaacaattttc 515  Q
    |||||||||||  |||| || ||||||||||||||  | ||||| |  ||||||||||||    
T  46915968 acatttacgtcttttttttggtgtgtttcagccttagttgaagtatatacaacaattttc 46915909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 561 - 645
Target Start/End: Original strand, 51044664 - 51044748
Alignment:
Q  561 caggtgggctcagattgccaagcacttacctggaagaacagataatgaggtgaaaaacttttggaattcaaccatgaagaagaaa 645  Q
    |||||||||||| |||||    || ||||| || ||||||||||||||| | |||||||||||||||||||   |||||||||||    
T  51044664 caggtgggctcaaattgcatcacaattaccagggagaacagataatgagataaaaaacttttggaattcaagtttgaagaagaaa 51044748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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