View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4812-Insertion-6 (Length: 568)

Name: NF4812-Insertion-6
Description: NF4812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4812-Insertion-6
NF4812-Insertion-6
[»] scaffold0135 (7 HSPs)
scaffold0135 (7-165)||(1932-2090)
scaffold0135 (7-165)||(6147-6305)
scaffold0135 (7-165)||(10362-10520)
scaffold0135 (7-165)||(14577-14735)
scaffold0135 (7-165)||(18792-18950)
scaffold0135 (7-165)||(23007-23165)
scaffold0135 (7-165)||(27222-27380)
[»] chr4 (6 HSPs)
chr4 (7-165)||(9203849-9204007)
chr4 (7-165)||(9208068-9208226)
chr4 (259-411)||(35902676-35902828)
chr4 (259-450)||(23892461-23892653)
chr4 (60-179)||(37617280-37617399)
chr4 (19-49)||(14863498-14863528)
[»] chr6 (1 HSPs)
chr6 (60-179)||(22082576-22082695)
[»] chr5 (1 HSPs)
chr5 (60-179)||(40164687-40164805)
[»] chr1 (2 HSPs)
chr1 (65-179)||(6921531-6921646)
chr1 (65-179)||(38238232-38238347)
[»] chr3 (2 HSPs)
chr3 (60-175)||(45456467-45456583)
chr3 (60-130)||(19767547-19767617)
[»] chr2 (1 HSPs)
chr2 (60-179)||(7827716-7827835)


Alignment Details
Target: scaffold0135 (Bit Score: 118; Significance: 6e-60; HSPs: 7)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 7 - 165
Target Start/End: Original strand, 1932 - 2090
Alignment:
Q  7 aatgctttgtcttgatattggaacaaatctaaactcaactgtattannnnnnngaaaagattctacatataaactttaggcatgaaccaaaagtgtatga 106  Q
    |||||||||||||||||||||||||| ||| |||||| ||||||||       ||||||||||||||||||||||||||||||||||||||| | |||||    
T  1932 aatgctttgtcttgatattggaacaactctgaactcagctgtattatttttttgaaaagattctacatataaactttaggcatgaaccaaaactatatga 2031  T
Q  107 tgcatttgaatcttatagcaacctacaactcacaaagttgtttagcattgtgtttgatg 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2032 tgcatttgaatcttatagcaacctacaactcacaaagttgtttagcattgtgtttgatg 2090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 7 - 165
Target Start/End: Original strand, 6147 - 6305
Alignment:
Q  7 aatgctttgtcttgatattggaacaaatctaaactcaactgtattannnnnnngaaaagattctacatataaactttaggcatgaaccaaaagtgtatga 106  Q
    |||||||||||||||||||||||||| ||| |||||| ||||||||       ||||||||||||||||||||||||||||||||||||||| | |||||    
T  6147 aatgctttgtcttgatattggaacaactctgaactcagctgtattatttttttgaaaagattctacatataaactttaggcatgaaccaaaactatatga 6246  T
Q  107 tgcatttgaatcttatagcaacctacaactcacaaagttgtttagcattgtgtttgatg 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6247 tgcatttgaatcttatagcaacctacaactcacaaagttgtttagcattgtgtttgatg 6305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #3
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 7 - 165
Target Start/End: Original strand, 10362 - 10520
Alignment:
Q  7 aatgctttgtcttgatattggaacaaatctaaactcaactgtattannnnnnngaaaagattctacatataaactttaggcatgaaccaaaagtgtatga 106  Q
    |||||||||||||||||||||||||| ||| |||||| ||||||||       ||||||||||||||||||||||||||||||||||||||| | |||||    
T  10362 aatgctttgtcttgatattggaacaactctgaactcagctgtattatttttttgaaaagattctacatataaactttaggcatgaaccaaaactatatga 10461  T
Q  107 tgcatttgaatcttatagcaacctacaactcacaaagttgtttagcattgtgtttgatg 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10462 tgcatttgaatcttatagcaacctacaactcacaaagttgtttagcattgtgtttgatg 10520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #4
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 7 - 165
Target Start/End: Original strand, 14577 - 14735
Alignment:
Q  7 aatgctttgtcttgatattggaacaaatctaaactcaactgtattannnnnnngaaaagattctacatataaactttaggcatgaaccaaaagtgtatga 106  Q
    |||||||||||||||||||||||||| ||| |||||| ||||||||       ||||||||||||||||||||||||||||||||||||||| | |||||    
T  14577 aatgctttgtcttgatattggaacaactctgaactcagctgtattatttttttgaaaagattctacatataaactttaggcatgaaccaaaactatatga 14676  T
Q  107 tgcatttgaatcttatagcaacctacaactcacaaagttgtttagcattgtgtttgatg 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14677 tgcatttgaatcttatagcaacctacaactcacaaagttgtttagcattgtgtttgatg 14735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #5
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 7 - 165
Target Start/End: Original strand, 18792 - 18950
Alignment:
Q  7 aatgctttgtcttgatattggaacaaatctaaactcaactgtattannnnnnngaaaagattctacatataaactttaggcatgaaccaaaagtgtatga 106  Q
    |||||||||||||||||||||||||| ||| |||||| ||||||||       ||||||||||||||||||||||||||||||||||||||| | |||||    
T  18792 aatgctttgtcttgatattggaacaactctgaactcagctgtattatttttttgaaaagattctacatataaactttaggcatgaaccaaaactatatga 18891  T
Q  107 tgcatttgaatcttatagcaacctacaactcacaaagttgtttagcattgtgtttgatg 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18892 tgcatttgaatcttatagcaacctacaactcacaaagttgtttagcattgtgtttgatg 18950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #6
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 7 - 165
Target Start/End: Original strand, 23007 - 23165
Alignment:
Q  7 aatgctttgtcttgatattggaacaaatctaaactcaactgtattannnnnnngaaaagattctacatataaactttaggcatgaaccaaaagtgtatga 106  Q
    |||||||||||||||||||||||||| ||| |||||| ||||||||       ||||||||||||||||||||||||||||||||||||||| | |||||    
T  23007 aatgctttgtcttgatattggaacaactctgaactcagctgtattatttttttgaaaagattctacatataaactttaggcatgaaccaaaactatatga 23106  T
Q  107 tgcatttgaatcttatagcaacctacaactcacaaagttgtttagcattgtgtttgatg 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23107 tgcatttgaatcttatagcaacctacaactcacaaagttgtttagcattgtgtttgatg 23165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #7
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 7 - 165
Target Start/End: Original strand, 27222 - 27380
Alignment:
Q  7 aatgctttgtcttgatattggaacaaatctaaactcaactgtattannnnnnngaaaagattctacatataaactttaggcatgaaccaaaagtgtatga 106  Q
    |||||||||||||||||||||||||| ||| |||||| ||||||||       ||||||||||||||||||||||||||||||||||||||| | |||||    
T  27222 aatgctttgtcttgatattggaacaactctgaactcagctgtattatttttttgaaaagattctacatataaactttaggcatgaaccaaaactatatga 27321  T
Q  107 tgcatttgaatcttatagcaacctacaactcacaaagttgtttagcattgtgtttgatg 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27322 tgcatttgaatcttatagcaacctacaactcacaaagttgtttagcattgtgtttgatg 27380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 6e-60; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 7 - 165
Target Start/End: Original strand, 9203849 - 9204007
Alignment:
Q  7 aatgctttgtcttgatattggaacaaatctaaactcaactgtattannnnnnngaaaagattctacatataaactttaggcatgaaccaaaagtgtatga 106  Q
    |||||||||||||||||||||||||| ||| |||||| ||||||||       ||||||||||||||||||||||||||||||||||||||| | |||||    
T  9203849 aatgctttgtcttgatattggaacaactctgaactcagctgtattatttttttgaaaagattctacatataaactttaggcatgaaccaaaactatatga 9203948  T
Q  107 tgcatttgaatcttatagcaacctacaactcacaaagttgtttagcattgtgtttgatg 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9203949 tgcatttgaatcttatagcaacctacaactcacaaagttgtttagcattgtgtttgatg 9204007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 7 - 165
Target Start/End: Original strand, 9208068 - 9208226
Alignment:
Q  7 aatgctttgtcttgatattggaacaaatctaaactcaactgtattannnnnnngaaaagattctacatataaactttaggcatgaaccaaaagtgtatga 106  Q
    |||||||||||||||||||||||||| ||| |||||| ||||||||       ||||||||||||||||||||||||||||||||||||||| | |||||    
T  9208068 aatgctttgtcttgatattggaacaactctgaactcagctgtattatttttttgaaaagattctacatataaactttaggcatgaaccaaaactatatga 9208167  T
Q  107 tgcatttgaatcttatagcaacctacaactcacaaagttgtttagcattgtgtttgatg 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9208168 tgcatttgaatcttatagcaacctacaactcacaaagttgtttagcattgtgtttgatg 9208226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 259 - 411
Target Start/End: Original strand, 35902676 - 35902828
Alignment:
Q  259 tttagttttaattagattctttatctaatttttagtttcagtttggtcgta-tatagtctcattttatattcagtttcgtcttaatgatcctttatattt 357  Q
    |||||||||| |||| |||||||||| | |||||  |||||||||||| || |||||||||||||| |||||| ||| ||| |||||||||||||| |||    
T  35902676 tttagttttagttaggttctttatcttacttttaaattcagtttggtcataatatagtctcattttttattca-tttagtcctaatgatcctttattttt 35902774  T
Q  358 tttaaattgttcttttgcttctatgacaaatttaaagatcatgattggtgagga 411  Q
    || ||||||||||||  ||| |||||||||||||| |||||||| | |||||||    
T  35902775 ttcaaattgttctttcacttttatgacaaatttaaggatcatgagttgtgagga 35902828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 259 - 450
Target Start/End: Original strand, 23892461 - 23892653
Alignment:
Q  259 tttagttttaattagattctttatctaatttttagtttcagtttggtcgta-tatagtctcattttatattcagtttcgtcttaatgatcctttatattt 357  Q
    |||||||||| || | || ||||||| |||||||  | ||||||| || || ||| ||||||||||||||||| ||| ||| |||||| ||||||| |||    
T  23892461 tttagttttagtttggttatttatcttatttttaaatccagtttgctcataatattgtctcattttatattcaatttagtcctaatgaccctttattttt 23892560  T
Q  358 tttaaattgttcttttgcttctatgacaaatttaaagatcatgattggtgaggactgaaatttcagaaggaaaacattgcttaacatgtgagg 450  Q
    || |||||||||||| ||||||||||||||||||| |||||||| | | ||||| |  ||||||| |||| |||||||| | |||||| ||||    
T  23892561 ttcaaattgttctttcgcttctatgacaaatttaaggatcatgagttgcgaggattacaatttcaaaaggtaaacattgttgaacatgagagg 23892653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 60 - 179
Target Start/End: Complemental strand, 37617399 - 37617280
Alignment:
Q  60 gaaaagattctacatataaactttaggcatgaaccaaaagtgtatgatgcatttgaatcttatagcaacctacaactcacaaagttgtttagcattgtgt 159  Q
    |||| |||||| |||| |||||||||||||||||||||| |||| ||  |||||| |||||| |||| |||| |||||| |||| | ||||||||  | |    
T  37617399 gaaaggattcttcataaaaactttaggcatgaaccaaaaatgtacgacacatttggatcttaaagcagcctataactcaaaaagctatttagcatgatat 37617300  T
Q  160 ttgatgttgagaatgtgtct 179  Q
    || |||||||||||||||||    
T  37617299 tttatgttgagaatgtgtct 37617280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 49
Target Start/End: Complemental strand, 14863528 - 14863498
Alignment:
Q  19 tgatattggaacaaatctaaactcaactgta 49  Q
    |||||||||||||||||||||||||||||||    
T  14863528 tgatattggaacaaatctaaactcaactgta 14863498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 60 - 179
Target Start/End: Original strand, 22082576 - 22082695
Alignment:
Q  60 gaaaagattctacatataaactttaggcatgaaccaaaagtgtatgatgcatttgaatcttatagcaacctacaactcacaaagttgtttagcattgtgt 159  Q
    |||| |||||| |||| |||||||||||||||||||||| |||| ||  |||||| |||||| | ||||||| |||||| |||| | ||||||||  | |    
T  22082576 gaaaggattcttcataaaaactttaggcatgaaccaaaaatgtacgacacatttggatcttaaaacaacctataactcaaaaagctatttagcatgatat 22082675  T
Q  160 ttgatgttgagaatgtgtct 179  Q
    || |||||||||||||||||    
T  22082676 tttatgttgagaatgtgtct 22082695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 179
Target Start/End: Original strand, 40164687 - 40164805
Alignment:
Q  60 gaaaagattctacatataaactttaggcatgaaccaaaagtgtatgatgcatttgaatcttatagcaacctacaactcacaaagttgtttagcattgtgt 159  Q
    |||| |||||| |||| ||||||||||| ||||| |||| |||| ||  |||||| |||||| ||||||||| |||||| |||||| ||||||||  | |    
T  40164687 gaaaggattcttcata-aaactttaggcttgaactaaaaatgtacgacacatttggatcttaaagcaacctataactcaaaaagttatttagcatgatat 40164785  T
Q  160 ttgatgttgagaatgtgtct 179  Q
    || ||||||| |||||||||    
T  40164786 tttatgttgataatgtgtct 40164805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 179
Target Start/End: Original strand, 6921531 - 6921646
Alignment:
Q  65 gattctacatataaactttaggcatgaaccaaaagtgtatgatgcatttgaatcttatagcaacctacaactcacaaag-ttgtttagcattgtgtttga 163  Q
    |||||| |||| || ||||||||||||||||||| |||||||  |||||| |||||| ||||||||| ||| || || | || ||||||||  | ||| |    
T  6921531 gattcttcataaaatctttaggcatgaaccaaaaatgtatgacacatttggatcttaaagcaacctataacccaaaaggtttatttagcatgatatttta 6921630  T
Q  164 tgttgagaatgtgtct 179  Q
    ||||||||||||||||    
T  6921631 tgttgagaatgtgtct 6921646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 179
Target Start/End: Complemental strand, 38238347 - 38238232
Alignment:
Q  65 gattctacatataaactttaggcatgaaccaaaagtgtatgatgcatttgaatcttatagcaacctacaactcacaaag-ttgtttagcattgtgtttga 163  Q
    |||||| |||| || ||||||||||||||||||| |||||||  |||||| |||||| ||||||||| ||| || || | || ||||||||  | ||| |    
T  38238347 gattcttcataaaatctttaggcatgaaccaaaaatgtatgacacatttggatcttaaagcaacctataacccaaaaggtttatttagcatgatatttta 38238248  T
Q  164 tgttgagaatgtgtct 179  Q
    ||||||||||||||||    
T  38238247 tgttgagaatgtgtct 38238232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 175
Target Start/End: Complemental strand, 45456583 - 45456467
Alignment:
Q  60 gaaaagattctacatataaactttaggcatgaaccaaaagtgta-tgatgcatttgaatcttatagcaacctacaactcacaaagttgtttagcattgtg 158  Q
    |||| |||||| |||| || ||||||||||||||||||| |||| |||  |||||| |||||| ||||||||| ||| || || ||| ||||||||  |     
T  45456583 gaaaggattcttcataaaatctttaggcatgaaccaaaaatgtattgacacatttggatcttaaagcaacctataacccaaaaggttatttagcatgata 45456484  T
Q  159 tttgatgttgagaatgt 175  Q
    ||| |||||||||||||    
T  45456483 ttttatgttgagaatgt 45456467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 19767547 - 19767617
Alignment:
Q  60 gaaaagattctacatataaactttaggcatgaaccaaaagtgtatgatgcatttgaatcttatagcaacct 130  Q
    |||| |||||| |||| ||||||||||||||||| |||| |||| ||  |||||| |||||| ||||||||    
T  19767547 gaaaggattcttcataaaaactttaggcatgaacaaaaaatgtacgacacatttggatcttaaagcaacct 19767617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 179
Target Start/End: Complemental strand, 7827835 - 7827716
Alignment:
Q  60 gaaaagattctacatataaactttaggcatgaaccaaaagtgtatgatgcatttgaatcttatagcaacctacaactcacaaagttgtttagcattgtgt 159  Q
    |||| ||||||  |||| |||||||||| | |||||||| ||||| |  |||||||||||||  |||||    |||||| |||||| ||||||||| | |    
T  7827835 gaaaggattctttatatcaactttaggccttaaccaaaaatgtattacacatttgaatcttaatgcaacaagtaactcaaaaagttatttagcattatct 7827736  T
Q  160 ttgatgttgagaatgtgtct 179  Q
    || ||| |||||||||||||    
T  7827735 tttatgctgagaatgtgtct 7827716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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