View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4812-Insertion-7 (Length: 500)
Name: NF4812-Insertion-7
Description: NF4812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4812-Insertion-7 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 268 - 500
Target Start/End: Complemental strand, 2782520 - 2782288
Alignment:
| Q |
268 |
tgttgttggtaacagcaacacagtggttacaaagggagatagtgggtacaaacttgggtccagtgccatgccaaggtgttaaagattgacaaatatggca |
367 |
Q |
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| T |
2782520 |
tgttgttggtaacagcaacacagtggttacaaagggagatagtgggtacaaacttgggtccagtgccatgccaaggtgttaaagattgacaaatatggca |
2782421 |
T |
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| Q |
368 |
gagaagaaacctgtgatgctttgtgactatgaagtttgcagtgtgaaccttagcatcacattcccaacaaaggcttgcctgatctgattcacagaacaac |
467 |
Q |
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| T |
2782420 |
gagaagaaacctgtgatgctttgtgactatgaagtttgcagtgtgaaccttagcatcacattcccaacaaaggcttgcttgatctgattcacagaacaac |
2782321 |
T |
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| Q |
468 |
tttgctggacttttgcacaactcacatttcttc |
500 |
Q |
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| T |
2782320 |
tttgctggacttttgcacaactcacatttcttc |
2782288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 209
Target Start/End: Complemental strand, 2782778 - 2782576
Alignment:
| Q |
7 |
agaaactaattttgttacttaccaatctatgaatctaaaacaaaaatcctcaaattaatttagcacacaagaaaaatgaagagaggaagaaaaattacag |
106 |
Q |
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| T |
2782778 |
agaaactaattttgttacttaccaatctatgaatctaaaacaaaaatcctcaaattaatttagcacacaagaaaaatgaagagaggaagaaaaattacag |
2782679 |
T |
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| Q |
107 |
gatatatatttatactagttggtagcattagtttgcactatttgaagaacaagaagaaactggtggtggagttgtagatttccatggaaccacttgattt |
206 |
Q |
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| T |
2782678 |
gaaatatatttatactagttggtagcattagtttgcactatttgaagaacaagaagaaactggtggtggagttgtagatttccatggaaccacttgattt |
2782579 |
T |
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| Q |
207 |
tct |
209 |
Q |
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| T |
2782578 |
tct |
2782576 |
T |
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