View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4812-Insertion-8 (Length: 476)
Name: NF4812-Insertion-8
Description: NF4812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4812-Insertion-8 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 151 - 385
Target Start/End: Complemental strand, 9570686 - 9570451
Alignment:
| Q |
151 |
attaattcaaactataaacaaaccactttttcgtggaagtttatgtttggatttgtcttg-tataaatttaatttaatatttggttttaaaatattatga |
249 |
Q |
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| T |
9570686 |
attaattcaaactataaataaaccactttttcgtggaagtttatgtttggatttgtcttggtataaatttaatttaatatctggttttaaaatattatga |
9570587 |
T |
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| Q |
250 |
ttttaaagtgtaaaaacttacatacatcacaatcatcaatgttgtgtgtgactttttacgataaaagtcaaatatttttggtgtaattttaattaattaa |
349 |
Q |
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| T |
9570586 |
ttttaaagtgtaaaaacttacatacatcacaatcatcaatgttgtgtgtgactttttacgataaaagtcaaatatttttggtgtaattttaattaattaa |
9570487 |
T |
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| Q |
350 |
ttaaatcaaaacatagctacctatattttggtgtaa |
385 |
Q |
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| T |
9570486 |
ttaaatcaaaacatagctacctatattttggtgtaa |
9570451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 151 - 328
Target Start/End: Complemental strand, 9562592 - 9562409
Alignment:
| Q |
151 |
attaattcaaactataaacaaaccactttttcgtggaagtttatgtttggatttgtcttg-tataaatttaatttaatatttggttttaaaatatta--- |
246 |
Q |
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| T |
9562592 |
attaattcaaactataaacaaaccactttttcgtggaagtttatgtttggatttgtcttggtataaatttaatttaatatctggttttaaaatattactg |
9562493 |
T |
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| Q |
247 |
--tgattttaaagtgtaaaaacttacatacatcacaatcatcaatgttgtgtgtgactttttacgataaaagtcaaatattttt |
328 |
Q |
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| T |
9562492 |
tatgattttaaaatgtaaaaacttacatacatcacaatcatcaatgttatgtgtgattttttacgataaaagtgaaacattttt |
9562409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 9570869 - 9570797
Alignment:
| Q |
8 |
ccaacactttggtttgtttaaggtttcatgaatttgtgctgttgtctgtgggccctgaatatatagcatgtgt |
80 |
Q |
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| T |
9570869 |
ccaacactttggtttgtttaaggtttcatgaatttgtgttgttgtctgtgggccctgaatatatagcatgtgt |
9570797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 9562769 - 9562699
Alignment:
| Q |
8 |
ccaacactttggtttgtttaaggtttcatgaatttgtgctgttgtctgtgggccctgaatatatagcatgt |
78 |
Q |
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| T |
9562769 |
ccaacactttggcttgtttaaagtttcatgaatttgtgttgttgtctgtgggccctgaatatatagcatgt |
9562699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 430 - 476
Target Start/End: Complemental strand, 9570402 - 9570356
Alignment:
| Q |
430 |
caataagtttcctccaacagcgaaccatttttatttgaggtatcatg |
476 |
Q |
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| T |
9570402 |
caataagttccctccaacagcgaaccgttttcatttgaggtatcatg |
9570356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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