View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4812_high_3 (Length: 448)
Name: NF4812_high_3
Description: NF4812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4812_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 33446431 - 33446849
Alignment:
| Q |
1 |
ccttaagcatggaagtattgtcatcgcagccattacaagttgtactaatacatcaaaccctagtgcaatgcttagtgctggtcttgtcgcaaagaaagcc |
100 |
Q |
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| T |
33446431 |
ccttaagcatggaagtattgtcatcgcagccattacaagttgtactaatacatcaaaccctagtgcaatgcttagtgctggtcttgtcgcaaagaaagcc |
33446530 |
T |
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| Q |
101 |
tgtgaactagatttggaggttagtctcaactctcaacacatacatgtaaaatcaaaatgaaaattgga--caaaccttcgattccgattggctagatagt |
198 |
Q |
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| T |
33446531 |
tgtgaactaggtttggaggttagtctgaaatctcaa-------------------aatgaaatttggatgcaaaccttcgattccgattggctagatagt |
33446611 |
T |
|
| Q |
199 |
ctaaatataacatcaatcattttgatatgttgtttccatgtgattttatatcaggtcaagccatggattaaaacaagtcttgctcctggctcgagggtag |
298 |
Q |
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|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||| |
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| T |
33446612 |
ctaactataatatcaatcattttgatatgttgtttccatgtgattttatatcaggtcaagcgatggattaaaacaagtcttgctcctggctcaagagtag |
33446711 |
T |
|
| Q |
299 |
ttaccgaatatttaatccagaggttttcg--atatacctactcatttgtcttttcatttcaggtgtttcacgtatatttattttttaagaacataccttg |
396 |
Q |
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| T |
33446712 |
ttaccgaatatttaatccagaggttttcgatatatacctactcatttgtcttttcatttcaggtgtttcacgtatatttattttttaagaacataccttg |
33446811 |
T |
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| Q |
397 |
cttatattttatgtagtggcctacaaaaatatctaaat |
434 |
Q |
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| T |
33446812 |
cttatattttatgtagtggcctacaaaaatatctaaat |
33446849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 28306211 - 28306150
Alignment:
| Q |
35 |
acaagttgtactaatacatcaaaccctagtgcaatgcttagtgctggtcttgtcgcaaagaa |
96 |
Q |
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| T |
28306211 |
acaagttgtacaaatacatcaaacccaagtgttatgcttggagctggtcttgttgcaaagaa |
28306150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 37235900 - 37235961
Alignment:
| Q |
35 |
acaagttgtactaatacatcaaaccctagtgcaatgcttagtgctggtcttgtcgcaaagaa |
96 |
Q |
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| T |
37235900 |
acaagttgtacaaatacatcaaacccaagtgttatgcttggagctggtcttgttgcaaagaa |
37235961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 17039483 - 17039443
Alignment:
| Q |
250 |
caggtcaagccatggattaaaacaagtcttgctcctggctc |
290 |
Q |
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| T |
17039483 |
caggtcaagccttgggttaaaacaagtcttgctccaggctc |
17039443 |
T |
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