View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4812_high_7 (Length: 300)

Name: NF4812_high_7
Description: NF4812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4812_high_7
NF4812_high_7
[»] chr2 (1 HSPs)
chr2 (1-300)||(6500195-6500492)


Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 6500195 - 6500492
Alignment:
Q  1 aatacagatagagatttagagagagaaaatcccaacaacaccttactttctctctctacaaccaaccacccttccttccatttcatcggaacctctcatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6500195 aatacagatagagatttagagagagaaaatcccaacaacaccttactttctctctctacaaccaaccacccttccttccatttcatcggaacctctcatt 6500294  T
Q  101 ctagatagattactcttcaatggaccactttcctcgctccactcaacctgatccgtcttctcaatggaccggaccggattctcaaaccggtttagaaggt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6500295 ctagatagattactcttcaatggaccactttcctcgctccactcaacctgatccgtcttctcaatggaccggaccggattctcaaaccggtttagaaggt 6500394  T
Q  201 aaacaaactattttcttgtttannnnnnnngtagaatgtgaatgaattttgatctttgttgtaaaatgcagaacctatgtggcaattggggttaggtagt 300  Q
    ||| ||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6500395 aaataaactattttcttgttta--ttttttgtagaatgtgaatgaattttgatctttgttgtaaaatgcagaacctatgtggcaattggggttaggtagt 6500492  T

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