View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4812_low_10 (Length: 250)
Name: NF4812_low_10
Description: NF4812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4812_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 41661669 - 41661906
Alignment:
| Q |
1 |
tcaatgaagcgtggagtaagaatatatttcatgatgtaaattatgtgatgatgatatagggtgattcttaacaaaataaaccgacatagaggtaggatat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41661669 |
tcaatgaagcgtggagtaagaatatatttcatgatgtaaattatgtgatgaccatatagggtgattcttaacaaaataaaccgacatagaggtaagatat |
41661768 |
T |
|
| Q |
101 |
atttcatgatgtaaaatatgtgatgacaatggtattaaaaatagggaaaaatttataatttgcttttaaagtgagttttattttaatgatgagacagtcg |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41661769 |
atttcttgatgtaaaatatgtgatgacaatggtattaaaaatagggaaaagtttatactttgcttttaaagtgagttttattttaatgatgagacagtcg |
41661868 |
T |
|
| Q |
201 |
gttctacaatttcaaatcaaattgtagcttttaaagaa |
238 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41661869 |
gttctagaatttcaaatcaaattgtagcttttaaagaa |
41661906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University