View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4812_low_13 (Length: 207)
Name: NF4812_low_13
Description: NF4812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4812_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 34312172 - 34312347
Alignment:
| Q |
13 |
tggccaattaggagggtggtatgggcataaatcaaacctacaatgttttgatccgaatttatattttcccttaactttcttttaacctggttaaagaatt |
112 |
Q |
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| T |
34312172 |
tggccaattaggaggctggtatgggcataaatcaaacctacaatgttttgatccgaatttatattttcccttaactttcttttaacctggttaaagaatt |
34312271 |
T |
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| Q |
113 |
ttttattttacc-aaatgccctttgtcccatattttttccccatcatttctttcatcttcctcattccattatggag |
188 |
Q |
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| T |
34312272 |
ttttattttaccaaaatgccctttgtcccatatttttt-tccatcatttctttcatcttcctcattccattatggag |
34312347 |
T |
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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 127
Target Start/End: Original strand, 27330728 - 27330800
Alignment:
| Q |
54 |
aatgttttgatccgaatttatattttcccttaactttcttttaacctggttaaagaattttttattttaccaaa |
127 |
Q |
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| T |
27330728 |
aatgttttaatttgaacttatattttcg-ttaactttcttttaaccttgttaaacaaatttttattttatcaaa |
27330800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 3588462 - 3588503
Alignment:
| Q |
58 |
ttttgatccgaatttatattttcccttaactttcttttaacc |
99 |
Q |
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| T |
3588462 |
ttttgatccgagtttatattttccgttaactttcgtttaacc |
3588503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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