View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4812_low_2 (Length: 601)

Name: NF4812_low_2
Description: NF4812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4812_low_2
NF4812_low_2
[»] chr1 (6 HSPs)
chr1 (59-584)||(33513061-33513587)
chr1 (5-40)||(2509024-2509059)
chr1 (1-36)||(34307290-34307325)
chr1 (1-36)||(39250015-39250050)
chr1 (3-42)||(46901889-46901928)
chr1 (1-35)||(10146971-10147005)
[»] scaffold0062 (1 HSPs)
scaffold0062 (1-41)||(6717-6757)
[»] chr4 (7 HSPs)
chr4 (1-45)||(49243810-49243854)
chr4 (1-36)||(3672278-3672313)
chr4 (1-36)||(28093248-28093283)
chr4 (1-36)||(7217769-7217804)
chr4 (1-36)||(21391107-21391142)
chr4 (1-36)||(46192363-46192398)
chr4 (3-36)||(6112634-6112667)
[»] scaffold0043 (1 HSPs)
scaffold0043 (1-40)||(87315-87354)
[»] chr2 (7 HSPs)
chr2 (1-42)||(33732567-33732608)
chr2 (1-36)||(36315565-36315600)
chr2 (1-36)||(44958117-44958152)
chr2 (1-36)||(16089826-16089861)
chr2 (1-35)||(3831047-3831081)
chr2 (1-34)||(37914388-37914421)
chr2 (1-45)||(24137248-24137292)
[»] chr3 (8 HSPs)
chr3 (1-41)||(38231292-38231332)
chr3 (1-36)||(22894684-22894719)
chr3 (1-36)||(29460664-29460699)
chr3 (1-36)||(29471516-29471551)
chr3 (1-36)||(34750050-34750085)
chr3 (3-36)||(36370492-36370525)
chr3 (3-36)||(43999993-44000026)
chr3 (3-40)||(46112098-46112135)
[»] chr8 (7 HSPs)
chr8 (1-36)||(12665348-12665383)
chr8 (1-43)||(30432336-30432378)
chr8 (1-43)||(36189213-36189255)
chr8 (5-40)||(10203664-10203699)
chr8 (1-36)||(42162602-42162637)
chr8 (1-36)||(44081784-44081819)
chr8 (7-36)||(31318809-31318838)
[»] chr7 (8 HSPs)
chr7 (1-36)||(26972355-26972390)
chr7 (3-41)||(21807476-21807514)
chr7 (1-42)||(34108424-34108465)
chr7 (4-41)||(42221118-42221155)
chr7 (1-43)||(23980128-23980170)
chr7 (1-34)||(31148296-31148329)
chr7 (2-35)||(42950156-42950189)
chr7 (1-41)||(28307647-28307687)
[»] chr6 (3 HSPs)
chr6 (1-36)||(3987057-3987092)
chr6 (1-36)||(3118199-3118234)
chr6 (1-34)||(14022940-14022973)
[»] chr5 (7 HSPs)
chr5 (1-34)||(13347134-13347167)
chr5 (1-41)||(39370926-39370966)
chr5 (3-34)||(19596221-19596252)
chr5 (1-34)||(2237282-2237315)
chr5 (1-29)||(14831555-14831583)
chr5 (4-36)||(33404591-33404623)
chr5 (4-36)||(40888097-40888129)


Alignment Details
Target: chr1 (Bit Score: 460; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 59 - 584
Target Start/End: Complemental strand, 33513587 - 33513061
Alignment:
Q  59 ggtgtttgtataagatgacaaacaaaacttatatttggcaacnnnnnnnnn-gagaaaacaaacgaacctatactatattctaattttggcaaccatagc 157  Q
    ||||||||||||||||||||||||||||||| ||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33513587 ggtgtttgtataagatgacaaacaaaacttacatttggcaacaaaaaaaaatgagaaaacaaacgaacctatactatattctaattttggcaaccatagc 33513488  T
Q  158 aatcaaatttgtaaacgatttattaatatatgcttgatttataaagatttatctatatttgttgtttttgttatttagttttcaattcatattgacttca 257  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33513487 aatcaaatttgtaaatgatttattaatatatgcttgatttataaagatttatctatatttgttgtttttgttatttagtttgcaattcatattgacttca 33513388  T
Q  258 tattattattaactactataaatctatgacaataattgatgtacgtaaaataaatgataataattggtggctatgtgaatgaattgaaaataatccttag 357  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  33513387 tattattattaactactataaatctatgataataattgatgtgcgtaaaataaatgataataattggtggctatgtgaatgaattgaaaataatccttgg 33513288  T
Q  358 ctaattaaaatgatgcttattctttgttcacgtttgaagctgtaagaaattgagtctatagcataaaagattagtctctcacattataattacgtatgta 457  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33513287 ctaattaaaatgatgtttattctttgttcacgtttgaagctgtaagaaattgagtctatagcataaaagattagtctctcacaatataattacgtatgta 33513188  T
Q  458 tggataatactaccacatacacacctccttgaatcactccacaatcatagtgatcttgtctaaatgccttcattgtaaattattgtgtatagatagatat 557  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33513187 tggataatactaccacatacacacctccttgaatcactccacaatcatagtgatcttgtctaaatgccttcattgtaaattattgtgtatagatagatat 33513088  T
Q  558 tacatttcaataatagatgcaaataat 584  Q
    |||||||||||||||||||||||||||    
T  33513087 tacatttcaataatagatgcaaataat 33513061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 2509059 - 2509024
Alignment:
Q  5 tgtatgccacctaaggtggttcatgtataagaactc 40  Q
    |||||| |||||||||||||||||||||||||||||    
T  2509059 tgtatgtcacctaaggtggttcatgtataagaactc 2509024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 34307290 - 34307325
Alignment:
Q  1 agggtgtatgccacctaaggtggttcatgtataaga 36  Q
    ||||||||||||||||||||||||| ||||||||||    
T  34307290 agggtgtatgccacctaaggtggtttatgtataaga 34307325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 39250015 - 39250050
Alignment:
Q  1 agggtgtatgccacctaaggtggttcatgtataaga 36  Q
    ||||||||||||||||||| ||||||||||||||||    
T  39250015 agggtgtatgccacctaagatggttcatgtataaga 39250050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 46901889 - 46901928
Alignment:
Q  3 ggtgtatgccacctaaggtggttcatgtataagaactcat 42  Q
    |||||||| ||||||||||||||||||||||||| |||||    
T  46901889 ggtgtatgtcacctaaggtggttcatgtataagagctcat 46901928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 10147005 - 10146971
Alignment:
Q  1 agggtgtatgccacctaaggtggttcatgtataag 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  10147005 agggtgtatgccacctaaggtggtccatgtataag 10146971  T

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Target: scaffold0062 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 6757 - 6717
Alignment:
Q  1 agggtgtatgccacctaaggtggttcatgtataagaactca 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  6757 agggtgtatgccacctaaggtggttcatgtataagaactca 6717  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 49243854 - 49243810
Alignment:
Q  1 agggtgtatgccacctaaggtggttcatgtataagaactcattat 45  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  49243854 agggtgtatgccacctaaggtggttcatgtataagagctcattat 49243810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 3672313 - 3672278
Alignment:
Q  1 agggtgtatgccacctaaggtggttcatgtataaga 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  3672313 agggtgtatgccacctaaggtggttcatgtataaga 3672278  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 28093248 - 28093283
Alignment:
Q  1 agggtgtatgccacctaaggtggttcatgtataaga 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  28093248 agggtgtatgccacctaaggtggttcatgtataaga 28093283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 7217804 - 7217769
Alignment:
Q  1 agggtgtatgccacctaaggtggttcatgtataaga 36  Q
    ||||||||||||||||||||||||| ||||||||||    
T  7217804 agggtgtatgccacctaaggtggtttatgtataaga 7217769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 21391107 - 21391142
Alignment:
Q  1 agggtgtatgccacctaaggtggttcatgtataaga 36  Q
    ||||||||||||| ||||||||||||||||||||||    
T  21391107 agggtgtatgccatctaaggtggttcatgtataaga 21391142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 46192398 - 46192363
Alignment:
Q  1 agggtgtatgccacctaaggtggttcatgtataaga 36  Q
    |||||||||||||||||||||| |||||||||||||    
T  46192398 agggtgtatgccacctaaggtgattcatgtataaga 46192363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 6112667 - 6112634
Alignment:
Q  3 ggtgtatgccacctaaggtggttcatgtataaga 36  Q
    ||||||||||| ||||||||||||||||||||||    
T  6112667 ggtgtatgccatctaaggtggttcatgtataaga 6112634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 87315 - 87354
Alignment:
Q  1 agggtgtatgccacctaaggtggttcatgtataagaactc 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  87315 agggtgtatgccacctaaggtggttcatgtataagaactc 87354  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 33732608 - 33732567
Alignment:
Q  1 agggtgtatgccacctaaggtggttcatgtataagaactcat 42  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  33732608 agggtgtatgccacctaaggtggttcatgtataagagctcat 33732567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 36315600 - 36315565
Alignment:
Q  1 agggtgtatgccacctaaggtggttcatgtataaga 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  36315600 agggtgtatgccacctaaggtggttcatgtataaga 36315565  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 44958152 - 44958117
Alignment:
Q  1 agggtgtatgccacctaaggtggttcatgtataaga 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  44958152 agggtgtatgccacctaaggtggttcatgtataaga 44958117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 16089861 - 16089826
Alignment:
Q  1 agggtgtatgccacctaaggtggttcatgtataaga 36  Q
    |||||||||||||| |||||||||||||||||||||    
T  16089861 agggtgtatgccacttaaggtggttcatgtataaga 16089826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 3831047 - 3831081
Alignment:
Q  1 agggtgtatgccacctaaggtggttcatgtataag 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  3831047 agggtgtatgtcacctaaggtggttcatgtataag 3831081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 37914388 - 37914421
Alignment:
Q  1 agggtgtatgccacctaaggtggttcatgtataa 34  Q
    ||||||||||||||||||||||||| ||||||||    
T  37914388 agggtgtatgccacctaaggtggtttatgtataa 37914421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 24137248 - 24137292
Alignment:
Q  1 agggtgtatgccacctaaggtggttcatgtataagaactcattat 45  Q
    ||||||||| ||||||||||||||| |||||||| | ||||||||    
T  24137248 agggtgtataccacctaaggtggtttatgtataacagctcattat 24137292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 38231332 - 38231292
Alignment:
Q  1 agggtgtatgccacctaaggtggttcatgtataagaactca 41  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  38231332 agggtgtatgccacctaaggtggttcatgtataagagctca 38231292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 22894719 - 22894684
Alignment:
Q  1 agggtgtatgccacctaaggtggttcatgtataaga 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  22894719 agggtgtatgccacctaaggtggttcatgtataaga 22894684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 29460699 - 29460664
Alignment:
Q  1 agggtgtatgccacctaaggtggttcatgtataaga 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  29460699 agggtgtatgccacctaaggtggttcatgtataaga 29460664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 29471551 - 29471516
Alignment:
Q  1 agggtgtatgccacctaaggtggttcatgtataaga 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  29471551 agggtgtatgccacctaaggtggttcatgtataaga 29471516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 34750050 - 34750085
Alignment:
Q  1 agggtgtatgccacctaaggtggttcatgtataaga 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  34750050 agggtgtatgccacctaaggtggttcatgtataaga 34750085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 36370492 - 36370525
Alignment:
Q  3 ggtgtatgccacctaaggtggttcatgtataaga 36  Q
    |||||||| |||||||||||||||||||||||||    
T  36370492 ggtgtatgacacctaaggtggttcatgtataaga 36370525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 44000026 - 43999993
Alignment:
Q  3 ggtgtatgccacctaaggtggttcatgtataaga 36  Q
    |||||||| |||||||||||||||||||||||||    
T  44000026 ggtgtatgacacctaaggtggttcatgtataaga 43999993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 46112098 - 46112135
Alignment:
Q  3 ggtgtatgccacctaaggtggttcatgtataagaactc 40  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  46112098 ggtgtatgtcacctaagatggttcatgtataagaactc 46112135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 12665383 - 12665348
Alignment:
Q  1 agggtgtatgccacctaaggtggttcatgtataaga 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  12665383 agggtgtatgccacctaaggtggttcatgtataaga 12665348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 30432378 - 30432336
Alignment:
Q  1 agggtgtatgccacctaaggtggttcatgtataagaactcatt 43  Q
    ||||||||||||| |||||||||||||||||||||| ||||||    
T  30432378 agggtgtatgccatctaaggtggttcatgtataagagctcatt 30432336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 36189255 - 36189213
Alignment:
Q  1 agggtgtatgccacctaaggtggttcatgtataagaactcatt 43  Q
    ||||||||||||||||||| |||||||||||||||| ||||||    
T  36189255 agggtgtatgccacctaagatggttcatgtataagagctcatt 36189213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 10203699 - 10203664
Alignment:
Q  5 tgtatgccacctaaggtggttcatgtataagaactc 40  Q
    |||||| |||||||||||||||||||||||||||||    
T  10203699 tgtatgtcacctaaggtggttcatgtataagaactc 10203664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 42162637 - 42162602
Alignment:
Q  1 agggtgtatgccacctaaggtggttcatgtataaga 36  Q
    |||||||||| |||||||||||||||||||||||||    
T  42162637 agggtgtatgacacctaaggtggttcatgtataaga 42162602  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 44081819 - 44081784
Alignment:
Q  1 agggtgtatgccacctaaggtggttcatgtataaga 36  Q
    ||||||||||||||||||| ||||||||||||||||    
T  44081819 agggtgtatgccacctaagatggttcatgtataaga 44081784  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 36
Target Start/End: Complemental strand, 31318838 - 31318809
Alignment:
Q  7 tatgccacctaaggtggttcatgtataaga 36  Q
    ||||||||||||||||||||||||||||||    
T  31318838 tatgccacctaaggtggttcatgtataaga 31318809  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 26972355 - 26972390
Alignment:
Q  1 agggtgtatgccacctaaggtggttcatgtataaga 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  26972355 agggtgtatgccacctaaggtggttcatgtataaga 26972390  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 21807476 - 21807514
Alignment:
Q  3 ggtgtatgccacctaaggtggttcatgtataagaactca 41  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  21807476 ggtgtatgccatctaaggtggttcatgtataagaactca 21807514  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 34108465 - 34108424
Alignment:
Q  1 agggtgtatgccacctaaggtggttcatgtataagaactcat 42  Q
    |||||||||| ||||||||||||||||||||||||| |||||    
T  34108465 agggtgtatgtcacctaaggtggttcatgtataagagctcat 34108424  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 42221118 - 42221155
Alignment:
Q  4 gtgtatgccacctaaggtggttcatgtataagaactca 41  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  42221118 gtgtatgccacctaaggtggttcatgtataagagctca 42221155  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 23980170 - 23980128
Alignment:
Q  1 agggtgtatgccacctaaggtggttcatgtataagaactcatt 43  Q
    ||||||||||||||||| ||||||| |||||||| ||||||||    
T  23980170 agggtgtatgccacctatggtggtttatgtataacaactcatt 23980128  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 31148329 - 31148296
Alignment:
Q  1 agggtgtatgccacctaaggtggttcatgtataa 34  Q
    ||||||||||||||||||| ||||||||||||||    
T  31148329 agggtgtatgccacctaagatggttcatgtataa 31148296  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 42950156 - 42950189
Alignment:
Q  2 gggtgtatgccacctaaggtggttcatgtataag 35  Q
    ||||||||||||||||||||||||||||| ||||    
T  42950156 gggtgtatgccacctaaggtggttcatgtctaag 42950189  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 28307647 - 28307687
Alignment:
Q  1 agggtgtatgccacctaaggtggttcatgtataagaactca 41  Q
    ||||||||||||||||||||| ||| |||||||||| ||||    
T  28307647 agggtgtatgccacctaaggtagtttatgtataagagctca 28307687  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 3987057 - 3987092
Alignment:
Q  1 agggtgtatgccacctaaggtggttcatgtataaga 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  3987057 agggtgtatgccacctaaggtggttcatgtataaga 3987092  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 3118199 - 3118234
Alignment:
Q  1 agggtgtatgccacctaaggtggttcatgtataaga 36  Q
    |||||||||||||||||||||||||||| |||||||    
T  3118199 agggtgtatgccacctaaggtggttcatatataaga 3118234  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 14022973 - 14022940
Alignment:
Q  1 agggtgtatgccacctaaggtggttcatgtataa 34  Q
    ||||||||||||||||||||||||| ||||||||    
T  14022973 agggtgtatgccacctaaggtggtttatgtataa 14022940  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 13347167 - 13347134
Alignment:
Q  1 agggtgtatgccacctaaggtggttcatgtataa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  13347167 agggtgtatgccacctaaggtggttcatgtataa 13347134  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 39370966 - 39370926
Alignment:
Q  1 agggtgtatgccacctaaggtggttcatgtataagaactca 41  Q
    ||||||||||||| |||||||||||||||||||||| ||||    
T  39370966 agggtgtatgccatctaaggtggttcatgtataagagctca 39370926  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 34
Target Start/End: Original strand, 19596221 - 19596252
Alignment:
Q  3 ggtgtatgccacctaaggtggttcatgtataa 34  Q
    ||||||||||||||||||||||||||||||||    
T  19596221 ggtgtatgccacctaaggtggttcatgtataa 19596252  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 2237315 - 2237282
Alignment:
Q  1 agggtgtatgccacctaaggtggttcatgtataa 34  Q
    |||||||||| |||||||||||||||||||||||    
T  2237315 agggtgtatgtcacctaaggtggttcatgtataa 2237282  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 14831583 - 14831555
Alignment:
Q  1 agggtgtatgccacctaaggtggttcatg 29  Q
    |||||||||||||||||||||||||||||    
T  14831583 agggtgtatgccacctaaggtggttcatg 14831555  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 33404591 - 33404623
Alignment:
Q  4 gtgtatgccacctaaggtggttcatgtataaga 36  Q
    ||||||| |||||||||||||||||||||||||    
T  33404591 gtgtatggcacctaaggtggttcatgtataaga 33404623  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 40888097 - 40888129
Alignment:
Q  4 gtgtatgccacctaaggtggttcatgtataaga 36  Q
    |||||||||||||||||||||| ||||||||||    
T  40888097 gtgtatgccacctaaggtggtttatgtataaga 40888129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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