View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4812_low_5 (Length: 339)
Name: NF4812_low_5
Description: NF4812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4812_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 4 - 333
Target Start/End: Complemental strand, 45303918 - 45303586
Alignment:
| Q |
4 |
ttttacttttttgagtgcatgctcatttgaaatccgtgcatgccctatgttttagtttttgtgttgaggttaattaaattctttctttgtttctacagga |
103 |
Q |
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| T |
45303918 |
ttttacttttttgagtgcatgctcatttgaaattcgtgcatgccctatgttttagtttttgagttgaggttaattaaattctttctttgtttctacagga |
45303819 |
T |
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| Q |
104 |
atctgtttcaattcaaaggtcagcagcagca---aaagcagatggatggctccaattcgatgaagcagaattacagcaaagaagaaactttatggaaagg |
200 |
Q |
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| T |
45303818 |
atctgtttcaattcaaaggtcagcagcagcagcaaaagcagatggatggctccaattcgatgaagcagaattacagcaaagaagaaactttatggaaagg |
45303719 |
T |
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| Q |
201 |
aatgccacgtggcatatgatgcagttaacttcttcttgtcctacagctagcatgtccaccacaaccacagtaacaactagacttatggacccaaaactca |
300 |
Q |
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| T |
45303718 |
aatgccacgtggcatatgatgcagttaacttcttcttgtcctacagctagcatgtccaccacaaccacagtaacaactagacttatggacccaaaactca |
45303619 |
T |
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| Q |
301 |
tcaagacccatgaactcaacttattcatctcac |
333 |
Q |
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| T |
45303618 |
tcaagacccatgaactcaacttattcatttcac |
45303586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 139 - 231
Target Start/End: Complemental strand, 45150682 - 45150590
Alignment:
| Q |
139 |
cagatggatggctccaattcgatgaagcagaattacagcaaagaagaaactttatggaaaggaatgccacgtggcatatgatgcagttaactt |
231 |
Q |
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| T |
45150682 |
cagatagacggctccaatttgatgaagctgaactacagcaagaaagaaactttatggaaaggaatgtcatgtggcatatgatgctgttaactt |
45150590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 293
Target Start/End: Complemental strand, 45150492 - 45150446
Alignment:
| Q |
247 |
ctagcatgtccaccacaaccacagtaacaactagacttatggaccca |
293 |
Q |
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| T |
45150492 |
ctagcatggccatcacaaccacagtaacaactacactaatggaccca |
45150446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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