View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4813-Insertion-1 (Length: 1030)
Name: NF4813-Insertion-1
Description: NF4813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4813-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 488; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 125 - 652
Target Start/End: Complemental strand, 37998554 - 37998030
Alignment:
| Q |
125 |
ctgttgtatatattgacaggagaatgtgacacgaaaatagtgatattgaaggataatgagtcaattactactttggttatagtgcaaaactgcagcgctt |
224 |
Q |
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| T |
37998554 |
ctgttgtatatattgacaggagaatgtgacacgaaaatagtgatat----ggataatgagtcaattactactttggttatagtgcaaaactgcagcgctt |
37998459 |
T |
|
| Q |
225 |
tgaagttattctacttgatttcttggcttaggaggcactcttttatgaattggatgtaaccttgagagggatatagattaattagtagtggttgagttat |
324 |
Q |
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| T |
37998458 |
tgaaattattctacttgatttcttggcttaggaggcactcttttatgaattggatgtaaccttgagagggatatagattaattagtagtggttgagttat |
37998359 |
T |
|
| Q |
325 |
gaatattgtacataatgtcttgtctcatattgaatgaattggatgtaactttgggatcaatggttgtaaaagggatttatggctactataatgtaaagtt |
424 |
Q |
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| T |
37998358 |
gaatattgtacataatgtcttgtctcatattgaatgaattggatgtaactttgggatcaatggttgtaaaagggatttatggttactataatgtaaagtt |
37998259 |
T |
|
| Q |
425 |
tcatattgatttc-ttggcttaggatgcacctttttatgaattggatgtaaccttgatagggatatagattaattagaagtggttgagttatgaatattg |
523 |
Q |
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| T |
37998258 |
tcattttgatttctttggcttaggatgcacttttttatgaattggatgtaaccttgatagggatatagattaattagaagtggttgagttatgaatattg |
37998159 |
T |
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| Q |
524 |
tttatggctactataatgtaaagtttcatatttgaatgaatggctttgttttcaaattattttgtccataagtaaagtaatataaattgttcaggctaca |
623 |
Q |
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| T |
37998158 |
tttatggctactataatgtaaagtttcatatttgaatgaatggctttgttttcaaattattttgtccataagtaaagtaatataaattgttcaggctaca |
37998059 |
T |
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| Q |
624 |
atagtggtgatgatattgcagaaaaaatg |
652 |
Q |
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| T |
37998058 |
atagtggtgatgatattgcagaaaaaatg |
37998030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 844 - 1030
Target Start/End: Complemental strand, 37997775 - 37997589
Alignment:
| Q |
844 |
gcataacaccctggcattcacaacactaatgagtgtactttgtgtttacacttgtctcaactaaactgatcctg-atttgtaccaaattaacattatcca |
942 |
Q |
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| T |
37997775 |
gcataacaccctg-cattcacaacactaatgagtgtactttgtgtttacacttgtatcaactaaactgatcctgaatttgtaccaaattaaca-tatcca |
37997678 |
T |
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| Q |
943 |
aattactttgtatcaactaaaggtgatactgca-ttgtgccaaaacaccgtatccaat-aacatcaaatatacgttgtatcaactaggat |
1030 |
Q |
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| T |
37997677 |
aaataacttttatcaactaaa-gtaatactgcatttgtgccaaaacaacatatccaataaacatccaaaataacttgtatcaactaggat |
37997589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 660 - 723
Target Start/End: Complemental strand, 37998045 - 37997982
Alignment:
| Q |
660 |
tattgcagaaaaaatgcagccaagcagtatgttatattgcatctataaaaacatcggattgcat |
723 |
Q |
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| T |
37998045 |
tattgcagaaaaaatgcagccaagcagtatgttatattgcatctataaaaacatcggattgcat |
37997982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 37998672 - 37998619
Alignment:
| Q |
7 |
acaaagcactgtaattttatcagtataaccaagatactttcataccattattag |
60 |
Q |
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| T |
37998672 |
acaaagcattgtaattttatcagtataaccaagatactttcataccattattag |
37998619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 378 - 421
Target Start/End: Original strand, 18455828 - 18455871
Alignment:
| Q |
378 |
ggatcaatggttgtaaaagggatttatggctactataatgtaaa |
421 |
Q |
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| T |
18455828 |
ggatcaatgtttgtaaaagggatttatgtctactataatgtaaa |
18455871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 378 - 419
Target Start/End: Original strand, 15744224 - 15744265
Alignment:
| Q |
378 |
ggatcaatggttgtaaaagggatttatggctactataatgta |
419 |
Q |
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| T |
15744224 |
ggatcaatgcttgtaaaagggatttatgtctactataatgta |
15744265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 378 - 419
Target Start/End: Complemental strand, 1572087 - 1572046
Alignment:
| Q |
378 |
ggatcaatggttgtaaaagggatttatggctactataatgta |
419 |
Q |
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| T |
1572087 |
ggatcaatgcttgtaaaagggatttatgtctactataatgta |
1572046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 380 - 421
Target Start/End: Original strand, 52611793 - 52611834
Alignment:
| Q |
380 |
atcaatggttgtaaaagggatttatggctactataatgtaaa |
421 |
Q |
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| T |
52611793 |
atcaatgcttgtaaaagggatttatgtctactataatgtaaa |
52611834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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