View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4813-Insertion-10 (Length: 580)

Name: NF4813-Insertion-10
Description: NF4813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4813-Insertion-10
NF4813-Insertion-10
[»] chr5 (11 HSPs)
chr5 (28-579)||(43229516-43230066)
chr5 (35-176)||(43246685-43246837)
chr5 (35-176)||(43253150-43253302)
chr5 (298-389)||(43239496-43239587)
chr5 (300-389)||(43246242-43246329)
chr5 (300-389)||(43252707-43252794)
chr5 (53-176)||(43258569-43258694)
chr5 (106-171)||(43225826-43225891)
chr5 (486-560)||(41697768-41697842)
chr5 (486-560)||(4921047-4921121)
chr5 (117-176)||(43254315-43254371)
[»] chr7 (4 HSPs)
chr7 (480-579)||(41085423-41085522)
chr7 (477-554)||(22491274-22491351)
chr7 (482-560)||(25749762-25749839)
chr7 (484-562)||(3765285-3765362)
[»] chr1 (5 HSPs)
chr1 (483-579)||(911612-911708)
chr1 (482-548)||(25017767-25017833)
chr1 (482-526)||(35951013-35951057)
chr1 (482-517)||(14591627-14591662)
chr1 (483-517)||(1048633-1048667)
[»] chr2 (1 HSPs)
chr2 (482-564)||(13039807-13039889)
[»] chr4 (3 HSPs)
chr4 (482-562)||(4728939-4729019)
chr4 (485-554)||(31522580-31522649)
chr4 (476-545)||(46308322-46308391)
[»] chr8 (3 HSPs)
chr8 (482-554)||(41312621-41312693)
chr8 (484-562)||(39565618-39565696)
chr8 (485-521)||(3461212-3461248)
[»] chr6 (3 HSPs)
chr6 (482-538)||(24164919-24164975)
chr6 (496-564)||(11416481-11416549)
chr6 (483-519)||(29794647-29794683)
[»] chr3 (1 HSPs)
chr3 (483-521)||(31543055-31543093)


Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 28 - 579
Target Start/End: Complemental strand, 43230066 - 43229516
Alignment:
Q  28 ttacgctgtattctaattaaactcatgttgcaatttaatcaacttttaatgagtgaagattaaaatggattcttaaacatttagggtatagtttgattgg 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  43230066 ttacgctgtattctaattaaactcatgttgcaatttaatcaacttttaatgagtgaagattaaaatggattcttaaacatttaggatatagtttgattgg 43229967  T
Q  128 aaaatgaatcatatttatgagtgtgcaactcaacatttgtcaatacttttccctcnnnnnnnnn--tatttgtcaatacttttgaaataaataaatagta 225  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||           |||||||||||||||| |||||||||||||||||    
T  43229966 aaaatgaatcatatttatgagtatgcaactcaacatttgtcaatacttttccctcaaaaaaaaaaatatttgtcaatactttcgaaataaataaatagta 43229867  T
Q  226 aaacttatctttgaccnnnnnnnnnnnncttatcagttgtaactataataataattattggttatggtttcgtcttacttgtttttcctatttactagct 325  Q
    ||||||||||||||||            ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |    
T  43229866 aaacttatctttgaccaaaaaaaaa---cttatcagttgtaactataataataattattcgttatggtttcgtcttacttgtttttcctatttactagtt 43229770  T
Q  326 ggtcaacccattaaaatagggactttagaccattctctctttttaataaagagacaccttagattatgaattgttgtatatcccactttattctattcaa 425  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43229769 ggtcaacccattaaaatagggactttagaccattctctcttttgaataaagagacaccttagattatgaattgttgtatatcccactttattctattcaa 43229670  T
Q  426 cccattaaaaaccgatattgtttatttgcttgagttctacatgttgcttctttaaaggtatgtttgtttcaaaggaaagaaagtgatgaggaaagacagg 525  Q
    ||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  43229669 cccattagaaatcgatattgtttatttgtttgagttctacatgttgcttctttaagggtatgtttgtttcaaaggaaagaaagtgatgaggaaagacagg 43229570  T
Q  526 tgatgcaaagaaagactttccatagtttgcaactctctacaataataaaggaaa 579  Q
    ||||| |||||||||||||| || ||||| ||||||||| |||| | |||||||    
T  43229569 tgatggaaagaaagactttctatggtttggaactctctaaaatagtgaaggaaa 43229516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 35 - 176
Target Start/End: Complemental strand, 43246837 - 43246685
Alignment:
Q  35 gtattctaattaaactcatgttgcaatttaatcaacttttaatgagtgaagattaaaatggattcttaaacatttagggtatagtttgattggaaaatga 134  Q
    ||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||    
T  43246837 gtattttaattaaactcatgttacaatttaatcaatttttaatgagtgaagattaaactggattcttaaacatttagtgtatagtttgattgaaaaatga 43246738  T
Q  135 atc-----------atatttatgagtgtgcaactcaacatttgtcaatacttt 176  Q
    |||           |||||||||||| ||||||||||||||||||||||||||    
T  43246737 atcattatcatgagatatttatgagtatgcaactcaacatttgtcaatacttt 43246685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 35 - 176
Target Start/End: Complemental strand, 43253302 - 43253150
Alignment:
Q  35 gtattctaattaaactcatgttgcaatttaatcaacttttaatgagtgaagattaaaatggattcttaaacatttagggtatagtttgattggaaaatga 134  Q
    ||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||    
T  43253302 gtattttaattaaactcatgttacaatttaatcaatttttaatgagtgaagattaaactggattcttaaacatttagtgtatagtttgattgaaaaatga 43253203  T
Q  135 atc-----------atatttatgagtgtgcaactcaacatttgtcaatacttt 176  Q
    |||           |||||||||||| ||||||||||||||||||||||||||    
T  43253202 atcattatcatgagatatttatgagtatgcaactcaacatttgtcaatacttt 43253150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 298 - 389
Target Start/End: Complemental strand, 43239587 - 43239496
Alignment:
Q  298 tcttacttgtttttcctatttactagctggtcaacccattaaaatagggactttagaccattctctctttttaataaagagacaccttagat 389  Q
    ||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  43239587 tcttacttgattttcctatttactagctgatcaacacattaaaatagggactttagaccattctctctttttaataaagagacacctcagat 43239496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 300 - 389
Target Start/End: Complemental strand, 43246329 - 43246242
Alignment:
Q  300 ttacttgtttttcctatttactagctggtcaacccattaaaatagggactttagaccattctctctttttaataaagagacaccttagat 389  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||| ||||    
T  43246329 ttacttgttttacctatttactagctggtcaacccattaaaatagggactttagaccatt--ctcttttgaataaagagacacctcagat 43246242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 300 - 389
Target Start/End: Complemental strand, 43252794 - 43252707
Alignment:
Q  300 ttacttgtttttcctatttactagctggtcaacccattaaaatagggactttagaccattctctctttttaataaagagacaccttagat 389  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||| ||||    
T  43252794 ttacttgttttacctatttactagctggtcaacccattaaaatagggactttagaccatt--ctcttttgaataaagagacacctcagat 43252707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 53 - 176
Target Start/End: Complemental strand, 43258694 - 43258569
Alignment:
Q  53 tgttgcaatttaatcaacttttaatg-agtgaagattaaaatggattcttaa---acatttagggtata-gtttgattggaaaatgaatcatatttatga 147  Q
    |||||||||||||||||||||||||| |||||| ||||||||| ||||||||   |||||||| ||||| ||||||||||||||||||||||||||  ||    
T  43258694 tgttgcaatttaatcaacttttaatgtagtgaaaattaaaatgaattcttaacaaacatttagtgtataagtttgattggaaaatgaatcatatttgcga 43258595  T
Q  148 gtgtgcaactcaacatttgtcaatacttt 176  Q
    || |   ||||||||||||||||| ||||    
T  43258594 gtat---actcaacatttgtcaatgcttt 43258569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 106 - 171
Target Start/End: Complemental strand, 43225891 - 43225826
Alignment:
Q  106 atttagggtatagtttgattggaaaatgaatcatatttatgagtgtgcaactcaacatttgtcaat 171  Q
    |||||| ||||||||||||||  ||||||||||||||| ||||| |||||||||||||||||||||    
T  43225891 atttagtgtatagtttgattgataaatgaatcatatttgtgagtatgcaactcaacatttgtcaat 43225826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 486 - 560
Target Start/End: Complemental strand, 41697842 - 41697768
Alignment:
Q  486 tgtttgtttcaaaggaaagaaagtgatgaggaaagacaggtgatgcaaagaaagactttccatagtttgcaactc 560  Q
    ||||||||| |||||||||||||||| ||||| ||| || ||| | ||||||| ||||||||| ||||| |||||    
T  41697842 tgtttgttttaaaggaaagaaagtgaagaggagagaaagttgagggaaagaaacactttccattgtttggaactc 41697768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 486 - 560
Target Start/End: Original strand, 4921047 - 4921121
Alignment:
Q  486 tgtttgtttcaaaggaaagaaagtgatgaggaaagacaggtgatgcaaagaaagactttccatagtttgcaactc 560  Q
    ||||||||| |||||||||||||||| ||| | ||| || ||| | ||||||| ||||||||| ||||| |||||    
T  4921047 tgtttgttttaaaggaaagaaagtgaagagtagagaaagttgagggaaagaaacactttccattgtttggaactc 4921121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 43254371 - 43254315
Alignment:
Q  117 agtttgattggaaaatgaatcatatttatgagtgtgcaactcaacatttgtcaatacttt 176  Q
    |||||| |||||||||||||||||||| ||||| |   ||||||||||||||||| ||||    
T  43254371 agtttgtttggaaaatgaatcatatttgtgagtat---actcaacatttgtcaatgcttt 43254315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 480 - 579
Target Start/End: Complemental strand, 41085522 - 41085423
Alignment:
Q  480 aaggtatgtttgtttcaaaggaaagaaagtgatgaggaaagacaggtgatgcaaagaaagactttccatagtttgcaactctctacaataataaaggaaa 579  Q
    |||||||||||||||||||||||||||||||| ||||| ||| ||||| || ||||||||||||||||| ||||| ||||||||| |||| | |||||||    
T  41085522 aaggtatgtttgtttcaaaggaaagaaagtgacgaggagagaaaggtggtggaaagaaagactttccattgtttggaactctctaaaatagtgaaggaaa 41085423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 477 - 554
Target Start/End: Original strand, 22491274 - 22491351
Alignment:
Q  477 ttaaaggtatgtttgtttcaaaggaaagaaagtgatgaggaaagacaggtgatgcaaagaaagactttccatagtttg 554  Q
    |||| |||||||||||||||| |||||||||||||||| || ||| |||||| | |||||||| |||||||| |||||    
T  22491274 ttaagggtatgtttgtttcaagggaaagaaagtgatgacgagagaaaggtgaaggaaagaaagcctttccattgtttg 22491351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 560
Target Start/End: Original strand, 25749762 - 25749839
Alignment:
Q  482 ggtatgtttgtttcaaaggaaagaaagtgatgaggaaagacaggtgatgcaaagaaagactttccatagtttgcaactc 560  Q
    |||||||||||||| | |||| |||||||||||||| ||| |||||| | || |||||||||||||| ||||| |||||    
T  25749762 ggtatgtttgtttcgagggaa-gaaagtgatgaggagagaaaggtgagggaaggaaagactttccattgtttggaactc 25749839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 562
Target Start/End: Original strand, 3765285 - 3765362
Alignment:
Q  484 tatgtttgtttcaaaggaaagaaagtgatgaggaaagacaggtgatgcaaagaaagactttccatagtttgcaactctc 562  Q
    ||||||||||| |||||||||||||||| ||||| ||| |||||| | ||||||||  |||| || ||||| |||||||    
T  3765285 tatgtttgttttaaaggaaagaaagtga-gaggagagaaaggtgaaggaaagaaagtttttctattgtttggaactctc 3765362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 483 - 579
Target Start/End: Complemental strand, 911708 - 911612
Alignment:
Q  483 gtatgtttgtttcaaaggaaagaaagtgatgaggaaagacaggtgatgcaaagaaagactttccatagtttgcaactctctacaataataaaggaaa 579  Q
    |||| |||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||| ||| ||||| | ||||||| |||||| |||||||    
T  911708 gtatatttgtttcaaaggaaagaaagtgatgaggagagaaaggtgatggaaagaaagacttttcatggtttggagctctctaaaataatgaaggaaa 911612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 482 - 548
Target Start/End: Original strand, 25017767 - 25017833
Alignment:
Q  482 ggtatgtttgtttcaaaggaaagaaagtgatgaggaaagacaggtgatgcaaagaaagactttccat 548  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||| | || ||||||||||||||    
T  25017767 ggtatgtttgtttcaaaggaaagaaagtgatgaggagagaaaggtgagggaaggaaagactttccat 25017833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 482 - 526
Target Start/End: Complemental strand, 35951057 - 35951013
Alignment:
Q  482 ggtatgtttgtttcaaaggaaagaaagtgatgaggaaagacaggt 526  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||    
T  35951057 ggtatgtttgtttcaagggaaagaaagtgatgaggaaagaaaggt 35951013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 517
Target Start/End: Original strand, 14591627 - 14591662
Alignment:
Q  482 ggtatgtttgtttcaaaggaaagaaagtgatgagga 517  Q
    |||||||||||||||| |||||||||||||||||||    
T  14591627 ggtatgtttgtttcaagggaaagaaagtgatgagga 14591662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 517
Target Start/End: Complemental strand, 1048667 - 1048633
Alignment:
Q  483 gtatgtttgtttcaaaggaaagaaagtgatgagga 517  Q
    |||| ||||||||||||||||||||||||||||||    
T  1048667 gtatatttgtttcaaaggaaagaaagtgatgagga 1048633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 482 - 564
Target Start/End: Complemental strand, 13039889 - 13039807
Alignment:
Q  482 ggtatgtttgtttcaaaggaaagaaagtgatgaggaaagacaggtgatgcaaagaaagactttccatagtttgcaactctcta 564  Q
    ||||||||||||| |||||||||||||||||||||||| | |||||| | ||| ||||||||| | | ||||| |||||||||    
T  13039889 ggtatgtttgttttaaaggaaagaaagtgatgaggaaaaaaaggtgagggaaataaagactttgctttgtttggaactctcta 13039807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 482 - 562
Target Start/End: Original strand, 4728939 - 4729019
Alignment:
Q  482 ggtatgtttgtttcaaaggaaagaaagtgatgaggaaagacaggtgatgcaaagaaagactttccatagtttgcaactctc 562  Q
    ||||||||||||| ||||||||||||||||||| || ||| |||||| | ||| ||||| ||||| ||||||| |||||||    
T  4728939 ggtatgtttgttttaaaggaaagaaagtgatgaagagagaaaggtgagggaaaaaaagattttccctagtttggaactctc 4729019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 485 - 554
Target Start/End: Complemental strand, 31522649 - 31522580
Alignment:
Q  485 atgtttgtttcaaaggaaagaaagtgatgaggaaagacaggtgatgcaaagaaagactttccatagtttg 554  Q
    ||||||||||||| ||||||||||||| | ||||||| |||||| | ||||||| ||||||||| |||||    
T  31522649 atgtttgtttcaatggaaagaaagtgacgtggaaagaaaggtgagggaaagaaacactttccattgtttg 31522580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 476 - 545
Target Start/End: Complemental strand, 46308391 - 46308322
Alignment:
Q  476 tttaaaggtatgtttgtttcaaaggaaagaaagtgatgaggaaagacaggtgatgcaaagaaagactttc 545  Q
    ||||| |||||||||||||||| |||||||||||| |||||| ||| |||||||| | |||||| |||||    
T  46308391 tttaagggtatgtttgtttcaagggaaagaaagtggtgaggagagaaaggtgatggagagaaagtctttc 46308322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 482 - 554
Target Start/End: Original strand, 41312621 - 41312693
Alignment:
Q  482 ggtatgtttgtttcaaaggaaagaaagtgatgaggaaagacaggtgatgcaaagaaagactttccatagtttg 554  Q
    |||||||||||||||| |||||||||||| |||||||||| ||||||   ||||||| ||||| ||| |||||    
T  41312621 ggtatgtttgtttcaatggaaagaaagtgttgaggaaagaaaggtgagtgaaagaaacacttttcattgtttg 41312693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 484 - 562
Target Start/End: Original strand, 39565618 - 39565696
Alignment:
Q  484 tatgtttgtttcaaaggaaagaaagtgatgaggaaagacaggtgatgcaaagaaagactttccatagtttgcaactctc 562  Q
    |||||||||||||| ||||||| ||||| ||||| ||| ||||   | ||||||||||||||||| ||||| |||||||    
T  39565618 tatgtttgtttcaagggaaagatagtgaggaggagagaaaggttggggaaagaaagactttccattgtttggaactctc 39565696  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 485 - 521
Target Start/End: Complemental strand, 3461248 - 3461212
Alignment:
Q  485 atgtttgtttcaaaggaaagaaagtgatgaggaaaga 521  Q
    ||||||||||||||||||| |||||||||||||||||    
T  3461248 atgtttgtttcaaaggaaataaagtgatgaggaaaga 3461212  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 482 - 538
Target Start/End: Original strand, 24164919 - 24164975
Alignment:
Q  482 ggtatgtttgtttcaaaggaaagaaagtgatgaggaaagacaggtgatgcaaagaaa 538  Q
    |||||||||||||||| ||||||||||||||||||| ||| |||||| | |||||||    
T  24164919 ggtatgtttgtttcaagggaaagaaagtgatgaggagagaaaggtgagggaaagaaa 24164975  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 496 - 564
Target Start/End: Complemental strand, 11416549 - 11416481
Alignment:
Q  496 aaaggaaagaaagtgatgaggaaagacaggtgatgcaaagaaagactttccatagtttgcaactctcta 564  Q
    |||||||||||||||||||||| ||| |||| | | ||||||||| ||||||| ||||| || ||||||    
T  11416549 aaaggaaagaaagtgatgaggagagaaaggtaagggaaagaaagagtttccattgtttggaattctcta 11416481  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 483 - 519
Target Start/End: Original strand, 29794647 - 29794683
Alignment:
Q  483 gtatgtttgtttcaaaggaaagaaagtgatgaggaaa 519  Q
    ||||||||||||||||||||||||||||| |||||||    
T  29794647 gtatgtttgtttcaaaggaaagaaagtgaagaggaaa 29794683  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 521
Target Start/End: Original strand, 31543055 - 31543093
Alignment:
Q  483 gtatgtttgtttcaaaggaaagaaagtgatgaggaaaga 521  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  31543055 gtatgtttgtttcaatggaaagaaagtgacgaggaaaga 31543093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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