View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4813-Insertion-11 (Length: 540)

Name: NF4813-Insertion-11
Description: NF4813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4813-Insertion-11
NF4813-Insertion-11
[»] chr4 (1 HSPs)
chr4 (8-540)||(37784072-37784608)


Alignment Details
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 8 - 540
Target Start/End: Original strand, 37784072 - 37784608
Alignment:
Q  8 ttctttacgtaagaaatttttcattattcataactcaatgccaccctatgagtatcttctacatgttaaggatattgcattcacatggcacaacacaata 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37784072 ttctttacgtaagaaatttttcattattcataactcaatgccaccctatgagtatcttctacatgttaaggatcttgcattcacatggcacaacacaata 37784171  T
Q  108 aaactattataataagaaaggtatttgtgaatttcaagttgtatatcattcaacaatgttcttaaacaactgaatgaaaatactatcacaaacaaacttt 207  Q
     |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37784172 caactattataataagaaaggtatttgtgaatttcaagttgcatatcattcaacaatgttcttaaacaactgaatgaaaatactatcacaaacaaacttt 37784271  T
Q  208 acaagttgaaacactttgatatgaatttcaacataataatgtttctttgtaattataattgttgaaatttcaaatatttaagggttatttatagcatatc 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37784272 acaagttgaaacactttgatatgaatttcaacataataatgtttctttgtaattataagtgttgaaatttcaaatatttaagggttatttatagcatatc 37784371  T
Q  308 cgagatatgtttcagataaagatattcaagggtttacaattc-nnnnnnnnnnnnnctgaatcaaaccataatcgtcct--tgtagctaa-ttgtgtttc 403  Q
    ||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||| ||||  ||||||||| |||||||||    
T  37784372 cgagatatgtttcagataaagatattcaagggtttacaattctttttattttttttctgaatcaaaccataatcatccttatgtagctaagttgtgtttc 37784471  T
Q  404 ataaggacggtcgtagtttgattaaggaagaaaaatgaattgagcaattccaatctctatcaaacttgtttgtcccaaattgaacggttatagaggcttc 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37784472 ataaggacggtcgtagtttgattaaggaagaaaaatgaattgagcaactccaatctctatcaaacttgtttgtcccaaattgaacggttatagaggcttc 37784571  T
Q  504 accgttgttctacctttatcaaaatttgaaatgtgct 540  Q
      |||||||||||||||||||||||||||||||||||    
T  37784572 ggcgttgttctacctttatcaaaatttgaaatgtgct 37784608  T

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