View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4813-Insertion-12 (Length: 537)
Name: NF4813-Insertion-12
Description: NF4813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4813-Insertion-12 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 408; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 8 - 537
Target Start/End: Original strand, 18668989 - 18669513
Alignment:
| Q |
8 |
attaaaacattcaattgttattttcatttattttttagattaaatacaccatccctttttc-ccaaacaattcatctccatcacaaaccgttctgtttat |
106 |
Q |
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| T |
18668989 |
attaaaacattcaattgttattttcatttattttttagattaaatacactatgcctttttttccaaacagttcctctccatcacaaaccgttttgtttat |
18669088 |
T |
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| Q |
107 |
tatgtcacattaatctacaatccataaccaatccatcgcctcttccaaagattatcaaacctcaccttcgtcttcgtcgatctctctagcttatgtggtg |
206 |
Q |
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| T |
18669089 |
tctgtcacattaatctacaatccataaccaatccatcgcctcttccaaagattatcaaacctcacctccgtc------gatctctctagcttctgtggtg |
18669182 |
T |
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| Q |
207 |
accttaatgcacttctctctcgttttcccccttctgtttcccgtctcacatccctcaacctctccaaccaccccaccttccttgcactaggcttgaaaac |
306 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||| |
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| T |
18669183 |
accttattgcacttctctctcgttttcccccttctgtttcccgtctcacatccctcaacctcaccaaccaccccacctttcttgcactaggattgaaaac |
18669282 |
T |
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| Q |
307 |
tattctcaataacaccttgacgtctctcacgttgaagatgcgttttatttcatcgtcatcatcgtatatcaagtgtaatttctttgattaagaactcaaa |
406 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||| ||||| | |||||||||||||||||||||| ||||| || |
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| T |
18669283 |
tattctcaataacaccttgacctctctcacgttgaagatgctttttatttcatcttcatcttcgtacaccaagtgtaatttctttgattaaaaactccaa |
18669382 |
T |
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| Q |
407 |
ggatgctggttatgtcaataagtcatgtggcatttgtgagtgtgcatttaaatctctgttggctcttagtttaatgggaaaaacaatcctccacattata |
506 |
Q |
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| T |
18669383 |
ggatactggttatgtcaataagtcatgtggcatttgtgagtgtgcatttgaatctctgttggctcttagtttaatgggaaaaacaatcctccacattata |
18669482 |
T |
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| Q |
507 |
ttaagatatttacatatcatgatgttgttta |
537 |
Q |
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| T |
18669483 |
ttaagatatttacatatcatgatgttgttta |
18669513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 310 - 537
Target Start/End: Original strand, 18662823 - 18663050
Alignment:
| Q |
310 |
tctcaataacaccttgacgtctctcacgttgaagatgcgttttatttcatcgtcatcatcgtatatcaagtgtaatttctttgattaagaactcaaagga |
409 |
Q |
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|||||||| |||||| || ||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||| ||| |
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| T |
18662823 |
tctcaatagcaccttcacctctctcacgttgaagatgctttttattttatcgtcatcatcgtataccaagtgtaatttctttgattaaaaactcaatgga |
18662922 |
T |
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| Q |
410 |
tgctggttatgtcaataagtcatgtggcatttgtgagtgtgcatttaaatctctgttggctcttagtttaatgggaaaaacaatcctccacattatatta |
509 |
Q |
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| T |
18662923 |
cactggttatgtcaataagtcatgtggcatttgtgagtgtgcatttgaatctctgttggctcttagtttaatgggaaaaacaatcctccacattatatta |
18663022 |
T |
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| Q |
510 |
agatatttacatatcatgatgttgttta |
537 |
Q |
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| T |
18663023 |
agatatttacatatcatgatgttgttta |
18663050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 8 - 270
Target Start/End: Original strand, 18662567 - 18662824
Alignment:
| Q |
8 |
attaaaacattcaattgttattttcatttattttttagattaaatacaccatccctttttcccaaacaa-ttcatctccatcacaaaccgttctgtttat |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||| ||| |||||||||||||||||||| ||||| |
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| T |
18662567 |
attaaaacattcaattgttattttcatttattttttagattaaatacactatcctttttttccaaaatggttcctctccatcacaaaccgttctatttat |
18662666 |
T |
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| Q |
107 |
tatgtcacattaatctacaatccataaccaatccatcgcctcttccaaagattatcaaacctcaccttcgtcttcgtcgatctctctagcttatgtggtg |
206 |
Q |
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| T |
18662667 |
tctgtcacattaatctacaatccataacctatccatcgcctcttccaaagattaacaaacctcac------ctccgtcgatctctctagcttctgtggtg |
18662760 |
T |
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| Q |
207 |
accttaatgcacttctctctcgttttcccccttctgtttcccgtctcacatccctcaacctctc |
270 |
Q |
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| T |
18662761 |
accttaatgcaattctctcccgttttcccccttctgtttcccgtctcacatccctcaacatctc |
18662824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 474
Target Start/End: Complemental strand, 19855832 - 19855779
Alignment:
| Q |
421 |
tcaataagtcatgtggcatttgtgagtgtgcatttaaatctctgttggctctta |
474 |
Q |
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| T |
19855832 |
tcaagaagtcgtgtggcgtttgtgagtgtgcatctgaatctctgttggttctta |
19855779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 472 - 535
Target Start/End: Original strand, 9972383 - 9972446
Alignment:
| Q |
472 |
ttagtttaatgggaaaaacaatcctccacattatattaagatatttacatatcatgatgttgtt |
535 |
Q |
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|||||||| |||||||| |||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
9972383 |
ttagtttattgggaaaatcaatcctccacattgtattaagatatttacatatcataatgttgtt |
9972446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 58 - 170
Target Start/End: Original strand, 37579549 - 37579661
Alignment:
| Q |
58 |
atccctttttcccaaacaattcatctccatcacaaaccgttctgtttattatgtcacattaatctacaatccataaccaatccatcgcctcttccaaaga |
157 |
Q |
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||||||| || ||||||| ||| ||||||||||||||||||||||||||| | ||||||||| |||||||| ||| || || ||||||||||||| |
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| T |
37579549 |
atcccttgtttccaaacagttcctctccatcacaaaccgttctgtttattccttagcattaatctgcaatccatggccactctattgcctcttccaaagg |
37579648 |
T |
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| Q |
158 |
ttatcaaacctca |
170 |
Q |
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|| ||||||||| |
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| T |
37579649 |
ttcccaaacctca |
37579661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 201 - 287
Target Start/End: Original strand, 33707874 - 33707957
Alignment:
| Q |
201 |
gtggtgaccttaatgcacttctctctcgttttcccccttctgtttcccgtctcacatccctcaacctctccaaccaccccaccttcc |
287 |
Q |
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| T |
33707874 |
gtggtgacctaaacacacttctctctcgaatccctcattctgtttccc---tcacttccctcaacctctccaaccaccccaccttcc |
33707957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 250 - 287
Target Start/End: Original strand, 27004670 - 27004707
Alignment:
| Q |
250 |
tctcacatccctcaacctctccaaccaccccaccttcc |
287 |
Q |
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| T |
27004670 |
tctcacatccctcaacctctccaaccacaccaccttcc |
27004707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 321
Target Start/End: Complemental strand, 33397693 - 33397617
Alignment:
| Q |
245 |
tcccgtctcacatccctcaacctctccaaccaccccaccttccttgcactaggcttgaaaactattctcaataacac |
321 |
Q |
| |
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| T |
33397693 |
tcccgtctcacatctctcaacctctcaaaccaccccactttccccacgttaggattgcaaactattctcaaaaacac |
33397617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 33713755 - 33713791
Alignment:
| Q |
251 |
ctcacatccctcaacctctccaaccaccccaccttcc |
287 |
Q |
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| T |
33713755 |
ctcacttccctcaacctctccaaccaccccaccttcc |
33713791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 252 - 322
Target Start/End: Original strand, 37579734 - 37579804
Alignment:
| Q |
252 |
tcacatccctcaacctctccaaccaccccaccttccttgcactaggcttgaaaactattctcaataacacc |
322 |
Q |
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| T |
37579734 |
tcacttctctcaacctctccaaccaccccaccttccccgtattagggttgcagactattctcaaaaacacc |
37579804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 41491398 - 41491358
Alignment:
| Q |
8 |
attaaaacattcaattgttattttcatttattttttagatt |
48 |
Q |
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||||||||||||| |||||||||||||||||||||||||| |
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| T |
41491398 |
attaaaacattcatctgttattttcatttattttttagatt |
41491358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 371
Target Start/End: Original strand, 51988911 - 51988948
Alignment:
| Q |
334 |
cacgttgaagatgcgttttatttcatcgtcatcatcgt |
371 |
Q |
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| T |
51988911 |
cacgttgaagatgctttttatttcttcgtcatcatcgt |
51988948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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