View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4813-Insertion-13 (Length: 449)
Name: NF4813-Insertion-13
Description: NF4813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4813-Insertion-13 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 7 - 449
Target Start/End: Complemental strand, 26557736 - 26557303
Alignment:
| Q |
7 |
agcaagtaggtcataacacagttttaacatgaatggctcgcgttcttgggagaacaaaaggggtctacatgaaaataatgga--ataatctggacaaaaa |
104 |
Q |
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| T |
26557736 |
agcaagtaggtcataacatagttttaacatgaatggctcgcgttcttgggagaacaaaaggggtctacatgaaaataatggagaataatatggacaaaaa |
26557637 |
T |
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| Q |
105 |
tccagaacttgcttgctataatggagtcatgtgttctacacgcaatactaaagttttaaagttccacataatgatgaagagnnnnnnncttacgttttta |
204 |
Q |
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| T |
26557636 |
tccagaacttgcttgctataatggagtcatgtgttctaaacgcaatactaaagttttaaagttccacacaatgatgaagagaaaaaaacgtacgttttta |
26557537 |
T |
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| Q |
205 |
aagtctcacacagataaaatcacggttctcaaaacatttagtacattatgaactaaatgtaaa--nnnnnnncttcacttcgaaattaagtt-tttgatt |
301 |
Q |
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| T |
26557536 |
aagtctcacaccaataaaattacggttctcaaaacatttaatacattatgaactaaatgtaaatcttttttctttcacttcgaaattaagttgtttgatt |
26557437 |
T |
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| Q |
302 |
tttgcagaaatgatatgaatacttttgagtgcaagttcatcatggtatttccactatttactaaactatttccttagtaaagcgaacttgaaatcctttg |
401 |
Q |
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| T |
26557436 |
tt----gaattgatatgaatacttttgagtgcaagctcatcatggtatttgc------------actatttccttagtaaagcaaacttgaaatcctttg |
26557353 |
T |
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| Q |
402 |
ttattgcactatttcccacaatt--tctcttggtgttttcatccgatgta |
449 |
Q |
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| T |
26557352 |
ttattgcactatttcccacaatttctctcttggtgttttcatccaatgta |
26557303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 439
Target Start/End: Original strand, 37767978 - 37768025
Alignment:
| Q |
392 |
aaatcctttgttattgcactatttcccacaatttctcttggtgttttc |
439 |
Q |
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| T |
37767978 |
aaatcatttgttgttgcactatttttcacaatttctcttggtgttttc |
37768025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 439
Target Start/End: Original strand, 44851410 - 44851457
Alignment:
| Q |
392 |
aaatcctttgttattgcactatttcccacaatttctcttggtgttttc |
439 |
Q |
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| T |
44851410 |
aaatcttttgttgtttcactatttcccacaatttctcttggtattttc |
44851457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 142
Target Start/End: Complemental strand, 38199143 - 38199092
Alignment:
| Q |
87 |
gaataatctggacaaaaatccagaacttgcttgctataatggagtcatgtgttcta |
142 |
Q |
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| T |
38199143 |
gaataatctggacaaaaatccagaact----tgctataatggggtcatgtgttcta |
38199092 |
T |
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