View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4813-Insertion-14 (Length: 433)
Name: NF4813-Insertion-14
Description: NF4813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4813-Insertion-14 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 8 - 368
Target Start/End: Complemental strand, 3851098 - 3850755
Alignment:
| Q |
8 |
gtcggaacatcggtgatcgttcaatctaaatcggatgatctagattcaagtttggtatttgaattataaaaataaacacttcattttt-ggactgtccga |
106 |
Q |
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| T |
3851098 |
gtcggaacatccgtgatcgttcaatctaaatcggatgatatagaatcaagttcgatatttgaattataaaaataaacacttcattttttggactgtccaa |
3850999 |
T |
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| Q |
107 |
atttaatcaaatggtcaccgatgttccgacaacatgaatgccgagtctctcctaactgcatagaattggataaggtaatctttgtatgagattttgatgg |
206 |
Q |
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| T |
3850998 |
ttttgatcaaatggtcaccgatgttccgacagcatgaatgccgag------------------aatcggagaatgtaatctttatatgagattttgatgg |
3850917 |
T |
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| Q |
207 |
tttaaagtaagcagtttattttaatcaactattggtatcaataacatggacattagaaatgtattgaaatatcaaccggtannnnnnncaatattattta |
306 |
Q |
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| T |
3850916 |
tttaaagtaagcagtttattttaatcaactattggtatcaatcacatggacattagaaatgtattgaaatatcgaccggtatttttttcaatattattta |
3850817 |
T |
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| Q |
307 |
aaataaattacttactttaaaagagtcgaattcgtttgtaagattataagatcaagatttga |
368 |
Q |
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| T |
3850816 |
aaataaattacttactttaaaagagttgaattcgtttataagattataagatcaagatttga |
3850755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 433
Target Start/End: Complemental strand, 3848683 - 3848611
Alignment:
| Q |
354 |
aagatcaagatttgatgttgtcatgcgcgtgcttgca-ttccctcatacacttcctatatatagatgaaattttgtgatca |
433 |
Q |
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| T |
3848683 |
aagatcaagatttgatgttgtcatg--------tgcacttccctcatacacttcatatatatagatgaaattttgtgatca |
3848611 |
T |
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