View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4813-Insertion-17 (Length: 411)
Name: NF4813-Insertion-17
Description: NF4813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4813-Insertion-17 |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 7 - 411
Target Start/End: Complemental strand, 41706832 - 41706426
Alignment:
| Q |
7 |
acatagttac-gtcatccaccactcaagagcacacgagtggatgaaccatgcataagcaattttatt-ctcacagaagnnnnnnnngacccgacccgtgt |
104 |
Q |
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| T |
41706832 |
acatagttacagtcattcaccactcaagagcacacgagtgtatgaaccatgcataagcaattttatttctcacagaagaaaaataagacccgacccgtgt |
41706733 |
T |
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| Q |
105 |
ctgaaacgggaaagaatccaattatccaaatgcacccgtgcaggtgcaggtatatacgctagtttttgtcgcgattgagtctatcccaaagcgacgcgca |
204 |
Q |
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| T |
41706732 |
ctgaaacgggaaagaatccaattatccaaatgcacccgtgcaggtgcaggtatatacgctagtttttgtcgcgattgagtctatcccaaagcgacgcgca |
41706633 |
T |
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| Q |
205 |
ctttctcctagcaaaacccacgcgcttcttttcaagatcatattcaacttcaaacccttgctgttgataattcccaagtactcctccgggcccaccgctc |
304 |
Q |
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| T |
41706632 |
ctttctcctagcaaaacccacgcgcttcttttcaagatcatattcaacttcaaacccttgctgttgataattcccaagtactcctccgggcccaccgctc |
41706533 |
T |
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| Q |
305 |
atttcagcttcatctccaccgttcatcaacatcaaacaccccactctctctttcctcctcactccatctccaccgtccataaattcgtaaaaataattct |
404 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41706532 |
atttcagcttcatctccaccgttcataaacatcaaacaccccactctctctttcctcctcactccatctccaccgtccataaattcgtaaaaataattct |
41706433 |
T |
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| Q |
405 |
tcctagg |
411 |
Q |
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| T |
41706432 |
tcctagg |
41706426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 185 - 411
Target Start/End: Original strand, 3743253 - 3743479
Alignment:
| Q |
185 |
ctatcccaaagcgacgcgcactttctcctagcaaaacccacgcgcttcttttcaagatcatattcaacttcaaacccttgctgttgataattcccaagta |
284 |
Q |
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|||||||||||| ||||||||| | || | || || |||||||||| || || |||||||| | || |||||||||||||||||||||||||| || |
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| T |
3743253 |
ctatcccaaagcaacgcgcactctttcttcgcgaaccccacgcgctctttctccagatcataaaccacctcaaacccttgctgttgataattccctagag |
3743352 |
T |
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| Q |
285 |
ctcctccgggcccaccgctcatttcagcttcatctccaccgttcatcaacatcaaacaccccactctctctttcctcctcactccatctccaccgtccat |
384 |
Q |
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| T |
3743353 |
tagctccaggtccaccatccaactcagtttcatcttcaccgttcatcaacatcatacaccccactttccctttccttctaataccatcgccaccgtccat |
3743452 |
T |
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| Q |
385 |
aaattcgtaaaaataattcttcctagg |
411 |
Q |
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||| || || ||||||||||||||||| |
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| T |
3743453 |
aaactcatagaaataattcttcctagg |
3743479 |
T |
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