View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4813-Insertion-2 (Length: 816)

Name: NF4813-Insertion-2
Description: NF4813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4813-Insertion-2
NF4813-Insertion-2
[»] chr6 (58 HSPs)
chr6 (430-816)||(27703094-27703480)
chr6 (11-359)||(26627777-26628124)
chr6 (11-359)||(26733754-26734101)
chr6 (401-583)||(26852469-26852651)
chr6 (18-249)||(26853496-26853724)
chr6 (493-761)||(26059489-26059782)
chr6 (493-761)||(26079459-26079752)
chr6 (232-359)||(27702553-27702681)
chr6 (25-238)||(26828251-26828464)
chr6 (24-183)||(27702385-27702545)
chr6 (493-707)||(25486907-25487133)
chr6 (25-234)||(26640563-26640772)
chr6 (25-234)||(26746529-26746738)
chr6 (625-707)||(26146505-26146587)
chr6 (741-816)||(27682508-27682583)
chr6 (65-246)||(27652347-27652527)
chr6 (503-575)||(27079154-27079226)
chr6 (635-693)||(25583205-25583263)
chr6 (761-816)||(27715092-27715147)
chr6 (24-121)||(27422539-27422637)
chr6 (24-127)||(27714152-27714256)
chr6 (484-579)||(27661809-27661904)
chr6 (97-200)||(31291298-31291401)
chr6 (359-439)||(26626929-26627010)
chr6 (359-439)||(26732906-26732987)
chr6 (579-672)||(26852366-26852449)
chr6 (24-121)||(26966105-26966203)
chr6 (11-187)||(26890000-26890177)
chr6 (725-809)||(27078974-27079057)
chr6 (552-620)||(25986776-25986842)
chr6 (625-666)||(27423938-27423979)
chr6 (257-311)||(26629167-26629222)
chr6 (259-317)||(26639902-26639961)
chr6 (257-292)||(26650681-26650716)
chr6 (257-311)||(26735143-26735198)
chr6 (259-317)||(26745868-26745927)
chr6 (257-292)||(26756649-26756684)
chr6 (411-482)||(26888957-26889027)
chr6 (257-292)||(26963922-26963957)
chr6 (257-311)||(27423010-27423065)
chr6 (24-117)||(26651115-26651209)
chr6 (24-117)||(26757083-26757177)
chr6 (644-694)||(27662009-27662059)
chr6 (30-121)||(26631461-26631553)
chr6 (30-121)||(26737436-26737528)
chr6 (322-358)||(26963781-26963817)
chr6 (721-760)||(26852258-26852297)
chr6 (255-317)||(27506847-27506910)
chr6 (541-579)||(25514498-25514536)
chr6 (541-579)||(26146658-26146696)
chr6 (368-461)||(26806255-26806348)
chr6 (410-464)||(27423823-27423877)
chr6 (322-359)||(26629049-26629086)
chr6 (322-359)||(26650541-26650578)
chr6 (322-359)||(26735025-26735062)
chr6 (322-359)||(26756509-26756546)
chr6 (579-620)||(27079085-27079126)
chr6 (322-359)||(27588951-27588988)
[»] chr8 (2 HSPs)
chr8 (729-816)||(29270364-29270451)
chr8 (24-127)||(29270045-29270149)
[»] scaffold0349 (2 HSPs)
scaffold0349 (761-816)||(16797-16852)
scaffold0349 (24-127)||(17688-17792)
[»] scaffold0003 (4 HSPs)
scaffold0003 (24-121)||(64726-64824)
scaffold0003 (625-666)||(63384-63425)
scaffold0003 (257-311)||(64298-64353)
scaffold0003 (410-464)||(63486-63540)
[»] chr4 (3 HSPs)
chr4 (97-137)||(18692521-18692561)
chr4 (97-137)||(18719020-18719060)
chr4 (97-137)||(18674450-18674490)
[»] chr1 (1 HSPs)
chr1 (491-552)||(26140142-26140203)


Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-148; HSPs: 58)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-148
Query Start/End: Original strand, 430 - 816
Target Start/End: Original strand, 27703094 - 27703480
Alignment:
Q  430 aagcatcctcaaatgtaaattgaaacaatattttaagattgcacaaacatcatccacaaaatattacatcatgtctcatcatttgaaaaacttctccaac 529  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||| ||||||| |||||||||||| ||||||||||||    
T  27703094 aagcatccccaaatgtaaatagaaacaatattttaagattgcacaaacataatccagaaaatcttaaatcatgtatcatcatttgaataacttctccaac 27703193  T
Q  530 tagaaacaacaaatttttaattgactatatacagaaattaatcaacatttgtaaacagcaaaccacaaacctccattgttgagattgagagttggcttta 629  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||  |||||    
T  27703194 tagaaacaacgaatttgtaattgactatatacagaaattaatcaacatttgtaaacagaaaatcacaaacctccaatgttgagattgagagttaacttta 27703293  T
Q  630 tgatggacctagaccaaggaatgtacccaacatctttctttcatcttgtgcactgcttaatatttaaatctcatccctatccgtctcgctttttgatgca 729  Q
    ||||||| |||||||||||||||||||| ||||| ||||||||||||||||| || |||| |||| ||||||||||| || ||| | |||||||||||||    
T  27703294 tgatggagctagaccaaggaatgtaccccacatcattctttcatcttgtgcattgtttaaaatttcaatctcatccccatgcgtgttgctttttgatgca 27703393  T
Q  730 cctagactaaggaatgtaccacatgtctttctttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctct 816  Q
    |||||||||||||||||||| ||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  27703394 cctagactaaggaatgtaccccatgtctttttttgttcctctttctttaaatcctgttgttgcaatgaagcattgatatcctcctct 27703480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 11 - 359
Target Start/End: Complemental strand, 26628124 - 26627777
Alignment:
Q  11 acctctggatatctcgcatgacaatgcaattagccagatgaccacagatggatccctgataaagtacagtcaaagaacaggtaatt-cttagttttggtt 109  Q
    |||||| || |||| |||||||||||||   ||||||||||| | |  ||| | ||||| || ||||||||||||||||   || | |||||||||||||    
T  26628124 acctctagacatcttgcatgacaatgcagagagccagatgactaaatgtggtttcctgacaatgtacagtcaaagaacaaaaaaatacttagttttggtt 26628025  T
Q  110 agagaaaagttgtgtaaactaccgacaacaggctgaaatcgtcggggatggattctccatgttcaactttatgagagagaatgttatttaaaaaaggggg 209  Q
    |||||||||||| ||||| ||||||| ||||||||||||| ||||| ||||||||| ||||||||||| |  ||||||||||||||||||||||| ||||    
T  26628024 agagaaaagttgcgtaaattaccgacgacaggctgaaatcatcgggaatggattcttcatgttcaactctgcgagagagaatgttatttaaaaaa-gggg 26627926  T
Q  210 atagggagattgaaggaagatgttagaaatatcacttcctcattttatgatataagatgaagtttgtatctaatttgacctgt-ggacaaaagctacata 308  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||  |||||||||||||||||||||   |  |||||| |||||||||||||  |    
T  26627925 atagggagattgaaggaagatgttaaaaacatcacttcctcattttatactataagatgaagtttgtatctccct--acctgtcggacaaaagctactca 26627828  T
Q  309 tttacattagcggtctttttcaaatgatctttcataaagattatgattaaa 359  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26627827 tttacattaacggtctttttcaaatgatctttcataaagattatgattaaa 26627777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 11 - 359
Target Start/End: Complemental strand, 26734101 - 26733754
Alignment:
Q  11 acctctggatatctcgcatgacaatgcaattagccagatgaccacagatggatccctgataaagtacagtcaaagaacaggtaatt-cttagttttggtt 109  Q
    |||||| || |||| |||||||||||||   ||||||||||| | |  ||| | ||||| || ||||||||||||||||   || | |||||||||||||    
T  26734101 acctctagacatcttgcatgacaatgcagagagccagatgactaaatgtggtttcctgacaatgtacagtcaaagaacaaaaaaatacttagttttggtt 26734002  T
Q  110 agagaaaagttgtgtaaactaccgacaacaggctgaaatcgtcggggatggattctccatgttcaactttatgagagagaatgttatttaaaaaaggggg 209  Q
    |||||||||||| ||||| ||||||| ||||||||||||| ||||| ||||||||| ||||||||||| |  ||||||||||||||||||||||| ||||    
T  26734001 agagaaaagttgcgtaaattaccgacgacaggctgaaatcatcgggaatggattcttcatgttcaactctgcgagagagaatgttatttaaaaaa-gggg 26733903  T
Q  210 atagggagattgaaggaagatgttagaaatatcacttcctcattttatgatataagatgaagtttgtatctaatttgacctgt-ggacaaaagctacata 308  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||  |||||||||||||||||||||   |  |||||| |||||||||||||  |    
T  26733902 atagggagattgaaggaagatgttaaaaacatcacttcctcattttatactataagatgaagtttgtatctccct--acctgtcggacaaaagctactca 26733805  T
Q  309 tttacattagcggtctttttcaaatgatctttcataaagattatgattaaa 359  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26733804 tttacattaacggtctttttcaaatgatctttcataaagattatgattaaa 26733754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 401 - 583
Target Start/End: Complemental strand, 26852651 - 26852469
Alignment:
Q  401 tgctttcaatgagaagtgtttgtgctacaaagcatcctcaaatgtaaattgaaacaatattttaagattgcacaaacatcatccacaaaatattacatca 500  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| | ||||||    
T  26852651 tgcttacaacgagaagtgtttgtgctacaaagcatcctcaaatgtaaattgaaacaatattttaagagtgcacaaacatcatcaacaaaatctcacatca 26852552  T
Q  501 tgtctcatcatttgaaaaacttctccaactagaaacaacaaatttttaattgactatatacagaaattaatcaacatttgtaa 583  Q
    ||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||    
T  26852551 tgtctcatcatttgaaaaacttctccaactagaaacaacgaatttgcaattgactatatacagaaattaatcaacatttgtaa 26852469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 26853724 - 26853496
Alignment:
Q  18 gatatctcgcatgacaatgcaattagccagatgaccacagatggatccctgataaagtacagtcaaagaacaggtaattcttagttttggttagagaaaa 117  Q
    ||||||| | |||||||||||| ||||||||||||||||||||||| | ||| || | || ||||||||||| |||||||||||||||||||||||||||    
T  26853724 gatatcttgaatgacaatgcaaatagccagatgaccacagatggatac-tgacaatgcacggtcaaagaacaagtaattcttagttttggttagagaaaa 26853626  T
Q  118 gttgtgtaaactaccgacaacaggctgaaatcgtcggggatggattctccatgttcaactttatgagagagaatgttatttaaaaaagggggatagggag 217  Q
    ||| |||||||||||| ||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||| || ||||||||  ||||||||||||    
T  26853625 gttatgtaaactaccgtcaacaggctgaaatcgttgggaatggattctccattttcaactttatgagagagaat-ttttttaaaaa--ggggatagggag 26853529  T
Q  218 attgaagga-agatgttagaaatatcacttcct 249  Q
    ||||||| | ||| |||||||| ||||||||||    
T  26853528 attgaagaagagaagttagaaacatcacttcct 26853496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 493 - 761
Target Start/End: Complemental strand, 26059782 - 26059489
Alignment:
Q  493 ttacatcatgtctcatcatttgaaaaacttctccaactagaaacaacaaatttttaattgactatatacagaaattaatcaacatttgta---------a 583  Q
    ||||||||||||||||  ||| | |||||||||||||||||||||   ||||| ||| |||||| |||||||||||||||||||||| ||         |    
T  26059782 ttacatcatgtctcatggtttaagaaacttctccaactagaaacattgaatttgtaactgactacatacagaaattaatcaacatttatacaaagtataa 26059683  T
Q  584 acagcaaaccacaaacctccattgttgagattgagag----------------ttggctttatgatggacctagaccaaggaatgtacccaacatctttc 667  Q
    ||| |||| ||||||||| || |||||||||||||||                ||  |||||||||||||||| ||| |||||||||||| |||||||||    
T  26059682 acatcaaagcacaaacctgcaatgttgagattgagagaataacaagaagacggttaactttatgatggacctaaaccgaggaatgtaccccacatctttc 26059583  T
Q  668 tttcatcttgtgcactgcttaatatttaaatctcatccctatccgtctcgctttttgatgcacctagactaaggaatgtaccacatgtctttct 761  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||| | ||||||||||||||||||||||||||||||||| || ||||||||    
T  26059582 tttcatcttgtgcactgcttaatatttcaatctcatccccatccgtgttgctttttgatgcacctagactaaggaatgtaccccaagtctttct 26059489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 493 - 761
Target Start/End: Complemental strand, 26079752 - 26079459
Alignment:
Q  493 ttacatcatgtctcatcatttgaaaaacttctccaactagaaacaacaaatttttaattgactatatacagaaattaatcaacatttgta---------a 583  Q
    ||||||||||||||||  ||| | |||||||||||||||||||||   ||||| ||| |||||| |||||||||||||||||||||| ||         |    
T  26079752 ttacatcatgtctcatggtttaagaaacttctccaactagaaacattgaatttgtaactgactacatacagaaattaatcaacatttatacaaagtataa 26079653  T
Q  584 acagcaaaccacaaacctccattgttgagattgagag----------------ttggctttatgatggacctagaccaaggaatgtacccaacatctttc 667  Q
    ||| |||| ||||||||| || |||||||||||||||                ||  |||||||||||||||| ||| |||||||||||| |||||||||    
T  26079652 acatcaaagcacaaacctgcaatgttgagattgagagaataacaagaagacggttaactttatgatggacctaaaccgaggaatgtaccccacatctttc 26079553  T
Q  668 tttcatcttgtgcactgcttaatatttaaatctcatccctatccgtctcgctttttgatgcacctagactaaggaatgtaccacatgtctttct 761  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||| | ||||||||||||||||||||||||||||||||| || ||||||||    
T  26079552 tttcatcttgtgcactgcttaatatttcaatctcatccccatccgtgttgctttttgatgcacctagactaaggaatgtaccccaagtctttct 26079459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 232 - 359
Target Start/End: Original strand, 27702553 - 27702681
Alignment:
Q  232 ttagaaatatcacttcctcattttatgatataagatgaagtttgtatctaatttgacctgt-ggacaaaagctacatatttacattagcggtctttttca 330  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||  ||||||||| ||||||||||||    
T  27702553 ttagaaacatcactttctcattttatgatataagatgaagtttgtatctaatttgacctgtgggataaaagctacacgtttacattaacggtctttttca 27702652  T
Q  331 aatgatctttcataaagattatgattaaa 359  Q
    ||| |||||||||||||||||||||||||    
T  27702653 aataatctttcataaagattatgattaaa 27702681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 25 - 238
Target Start/End: Complemental strand, 26828464 - 26828251
Alignment:
Q  25 cgcatgacaatgcaattagccagatgaccacagatggatccctgataaagtacagtcaaagaacaggtaatt-cttagttttggttagagaaaagttgtg 123  Q
    ||||||||||||| | ||||||||| || |||||||||  ||||| || ||||||||||| |||| | || | ||||||||||| |||||||||||| ||    
T  26828464 cgcatgacaatgcgaatagccagatcactacagatggactcctgacaatgtacagtcaaaaaacaagaaaatgcttagttttggatagagaaaagttctg 26828365  T
Q  124 taaactaccgacaacaggct-gaaatcgtcggggatggattctccatgttcaactttatgagagagaatgttatttaaaaaagggggatagggagattga 222  Q
    |||| ||| |||||| |||| ||||||  |||| ||||||| |||||||||||  ||||||||||||||||| ||  ||||| |||||||||||||||||    
T  26828364 taaattactgacaactggcttgaaatcaacgggaatggattttccatgttcaatgttatgagagagaatgttttt--aaaaatggggatagggagattga 26828267  T
Q  223 aggaagatgttagaaa 238  Q
    ||| ||||||||||||    
T  26828266 aggtagatgttagaaa 26828251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 24 - 183
Target Start/End: Original strand, 27702385 - 27702545
Alignment:
Q  24 tcgcatgacaatgcaattagccagatgaccacagatggatccctgataaagtacagtcaaagaacaggtaatt-cttagttttggttagagaaaagttgt 122  Q
    |||||||||||||||| |||||||||||| |||  | | | ||||| || ||||||||||| |||| | || | |||||||||||||||||||||||||     
T  27702385 tcgcatgacaatgcaaatagccagatgactacatgtcgtttcctgacaatgtacagtcaaaaaacaagaaaatacttagttttggttagagaaaagttgc 27702484  T
Q  123 gtaaactaccgacaacaggctgaaatcgtcggggatggattctccatgttcaactttatga 183  Q
    ||||| ||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  27702485 gtaaattacagacaacaggctgaaatcatcgggaatggattctccatgttcaactttatga 27702545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 493 - 707
Target Start/End: Complemental strand, 25487133 - 25486907
Alignment:
Q  493 ttacatcatgtctcatcatttgaaaaacttctccaactagaaacaacaaatttttaattgactatatacagaaattaatcaacatttgtaaacagcaaac 592  Q
    ||||||||||||||||  ||| | |||||||||||||||||||||   ||||| ||| ||||||||||||||||||  ||||||||| ||  || ||||     
T  25487133 ttacatcatgtctcatggtttaagaaacttctccaactagaaacattgaatttgtaactgactatatacagaaatt--tcaacatttata--caacaaag 25487038  T
Q  593 cacaaacctccattgttgagattgagag----------------ttggctttatgatggacctagaccaaggaatgtacccaacatctttctttcatctt 676  Q
    ||||||||| || |||||||||||||||                ||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  25487037 cacaaacctgcaatgttgagattgagagaataacaagaagacggttaactttatgatggacctagactaaggaatgtacccaacatctttctttcatctt 25486938  T
Q  677 gtgcactgcttaatatttaaatctcatccct 707  Q
    | |||||||||||||||| ||||||||||||    
T  25486937 gcgcactgcttaatatttcaatctcatccct 25486907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 25 - 234
Target Start/End: Complemental strand, 26640772 - 26640563
Alignment:
Q  25 cgcatgacaatgcaattagccagatgaccacagatggatccctgataaagtacagtcaaagaacaggtaatt-cttagttttggttagagaaaagttgtg 123  Q
    ||||||||||||| | ||||||||| || |||||||| | ||||| || |||||||||||||||  |||| | ||||||||||| |||||||||| |  |    
T  26640772 cgcatgacaatgcgaatagccagatcactacagatggtttcctgacaatgtacagtcaaagaactagtaaatgcttagttttggatagagaaaagctccg 26640673  T
Q  124 taaactaccgacaacaggctgaaatcgtcggggatggattctccatgttcaactttatgagagagaatgttatttaaaaaagggggatagggagattgaa 223  Q
    |||| || |||||||| |||||||| | |||| |||||||||| ||||||||  |||| || ||||| |||  |||||||| ||||||||||||||||||    
T  26640672 taaattatcgacaacaagctgaaattgacgggaatggattctctatgttcaatgttataagtgagaaagtt-gttaaaaaatggggatagggagattgaa 26640574  T
Q  224 ggaagatgtta 234  Q
    |||||||||||    
T  26640573 ggaagatgtta 26640563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 25 - 234
Target Start/End: Complemental strand, 26746738 - 26746529
Alignment:
Q  25 cgcatgacaatgcaattagccagatgaccacagatggatccctgataaagtacagtcaaagaacaggtaatt-cttagttttggttagagaaaagttgtg 123  Q
    ||||||||||||| | ||||||||| || |||||||| | ||||| || |||||||||||||||  |||| | ||||||||||| |||||||||| |  |    
T  26746738 cgcatgacaatgcgaatagccagatcactacagatggtttcctgacaatgtacagtcaaagaactagtaaatgcttagttttggatagagaaaagctccg 26746639  T
Q  124 taaactaccgacaacaggctgaaatcgtcggggatggattctccatgttcaactttatgagagagaatgttatttaaaaaagggggatagggagattgaa 223  Q
    |||| || |||||||| |||||||| | |||| |||||||||| ||||||||  |||| || ||||| |||  |||||||| ||||||||||||||||||    
T  26746638 taaattatcgacaacaagctgaaattgacgggaatggattctctatgttcaatgttataagtgagaaagtt-gttaaaaaatggggatagggagattgaa 26746540  T
Q  224 ggaagatgtta 234  Q
    |||||||||||    
T  26746539 ggaagatgtta 26746529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 625 - 707
Target Start/End: Complemental strand, 26146587 - 26146505
Alignment:
Q  625 ctttatgatggacctagaccaaggaatgtacccaacatctttctttcatcttgtgcactgcttaatatttaaatctcatccct 707  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  26146587 ctttatgatggacctagactaaggaatgtacccaacatctttctttcatcttgcgcactgcttaatatttcaatctcatccct 26146505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 741 - 816
Target Start/End: Complemental strand, 27682583 - 27682508
Alignment:
Q  741 gaatgtaccacatgtctttctttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctct 816  Q
    ||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  27682583 gaatgtaccccatgtctttctttgttcctctttcatcaattcctgttgttgcaatgaagcattgatatcctcctct 27682508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 65 - 246
Target Start/End: Original strand, 27652347 - 27652527
Alignment:
Q  65 cctgataaagtacagtcaaagaacaggtaatt-cttagttttggttagagaaaagttgtgtaaactaccgacaacaggctgaaatcgtcggggatggatt 163  Q
    ||||| || ||| |||||| ||||| |||| | ||||||||||||||||||||||||| ||| | ||||| ||||||||||||||||| ||| | |||||    
T  27652347 cctgacaatgtaaagtcaatgaacaagtaaatgcttagttttggttagagaaaagttgcgtatattaccggcaacaggctgaaatcgttgggaaaggatt 27652446  T
Q  164 ctccatgttcaactttatgagagagaatgttatttaaaaaagggggatagggagattgaaggaagatgttagaaatatcactt 246  Q
    ||| |||||||| || |||||||| |||||| ||| ||| | ||||||||||||||| | || |||| ||||||| |||||||    
T  27652447 ctctatgttcaa-ttaatgagagaaaatgttgttt-aaacatggggatagggagattaagggtagatattagaaacatcactt 27652527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 503 - 575
Target Start/End: Complemental strand, 27079226 - 27079154
Alignment:
Q  503 tctcatcatttgaaaaacttctccaactagaaacaacaaatttttaattgactatatacagaaattaatcaac 575  Q
    ||||||||||| |||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  27079226 tctcatcatttaaaaaacttgtccaactagaaacaacaaatttgtaattgaatatatacagaaattaatcaac 27079154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 635 - 693
Target Start/End: Complemental strand, 25583263 - 25583205
Alignment:
Q  635 gacctagaccaaggaatgtacccaacatctttctttcatcttgtgcactgcttaatatt 693  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25583263 gacctaaaccaaggaatgtacccaacatctttctttcatcttgtgcactgcttaatatt 25583205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 761 - 816
Target Start/End: Original strand, 27715092 - 27715147
Alignment:
Q  761 tttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctct 816  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27715092 tttgttcctctttcgtcaaatcctgctgttgcaatgaagcattgatatcctcctct 27715147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 24 - 121
Target Start/End: Original strand, 27422539 - 27422637
Alignment:
Q  24 tcgcatgacaatgcaattagccagatgaccacagatggatccctgataaagtacagtcaaagaacaggt-aattcttagttttggttagagaaaagttg 121  Q
    |||||||||||||||| |||||||||||| |||||||| | ||||| || |||||| ||||||||| || ||| ||||||||| |||||||||||||||    
T  27422539 tcgcatgacaatgcaaatagccagatgactacagatggtttcctgacaatgtacagacaaagaacaagtaaatgcttagttttcgttagagaaaagttg 27422637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 27714152 - 27714256
Alignment:
Q  24 tcgcatgacaatgcaattagccagatgaccacagatggatccctgataaagtacagtcaaagaac-aggtaattcttagttttggttagagaaaagttgt 122  Q
    |||||||||||||||| |||||||||||| |||  ||| | ||||| || ||||||||||||||| ||  ||| |||||||||||||||||||||||||     
T  27714152 tcgcatgacaatgcaaatagccagatgactacatgtggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgc 27714251  T
Q  123 gtaaa 127  Q
    |||||    
T  27714252 gtaaa 27714256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 484 - 579
Target Start/End: Original strand, 27661809 - 27661904
Alignment:
Q  484 cacaaaatattacatcatgtctcatcatttgaaaaacttctccaactagaaacaacaaatttttaattgactatatacagaaattaatcaacattt 579  Q
    |||| ||| |||||||||||||||| |||| |  |||||||||| ||| ||||||  ||||| |||||||||||||||||||||||||||| ||||    
T  27661809 cacataatcttacatcatgtctcatgatttaagcaacttctccatctataaacaatgaatttgtaattgactatatacagaaattaatcaatattt 27661904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 97 - 200
Target Start/End: Complemental strand, 31291401 - 31291298
Alignment:
Q  97 cttagttttggttagagaaaagttgtgtaaactaccgacaacaggctgaaatcgtcggggatggattctccatgttcaactttatgagagagaatgttat 196  Q
    ||||||||| ||||||||||||||| ||||| ||||||| |||||||||| || ||  | ||| ||||| ||||||||| |||||| ||||||||||| |    
T  31291401 cttagtttttgttagagaaaagttgcgtaaattaccgactacaggctgaattcatcaagaatgcattcttcatgttcaattttatgggagagaatgttgt 31291302  T
Q  197 ttaa 200  Q
    ||||    
T  31291301 ttaa 31291298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 359 - 439
Target Start/End: Complemental strand, 26627010 - 26626929
Alignment:
Q  359 atcgtattggtgttggacacagacacatgttggataccaa-catgctttcaatgagaagtgtttgtgctacaaagcatcctc 439  Q
    ||||| ||||||||| |||| ||||||||||| ||||||  ||||| ||||||||||||||||||| |||||||||||||||    
T  26627010 atcgtgttggtgttgtacacggacacatgttgcataccagtcatgccttcaatgagaagtgtttgttctacaaagcatcctc 26626929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 359 - 439
Target Start/End: Complemental strand, 26732987 - 26732906
Alignment:
Q  359 atcgtattggtgttggacacagacacatgttggataccaa-catgctttcaatgagaagtgtttgtgctacaaagcatcctc 439  Q
    ||||| ||||||||| |||| ||||||||||| ||||||  ||||| ||||||||||||||||||| |||||||||||||||    
T  26732987 atcgtgttggtgttgtacacggacacatgttgcataccagtcatgccttcaatgagaagtgtttgttctacaaagcatcctc 26732906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 579 - 672
Target Start/End: Complemental strand, 26852449 - 26852366
Alignment:
Q  579 tgtaaacagcaaaccacaaacctccattgttgagattgagagttggctttatgatggacctagaccaaggaatgtacccaacatctttctttca 672  Q
    |||||||||||||||||||||||||| |||||||||||||||||  ||||||          ||||||||||||||||| ||||||||||||||    
T  26852449 tgtaaacagcaaaccacaaacctccaatgttgagattgagagttaactttat----------gaccaaggaatgtaccctacatctttctttca 26852366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 26966203 - 26966105
Alignment:
Q  24 tcgcatgacaatgcaattagccagatgaccacagatggatccctgataaagtacagtcaaagaacaggt-aattcttagttttggttagagaaaagttg 121  Q
    |||||||||| ||||| |||||||||||| ||||||||   ||||| || |||||||||||||||| || ||  ||||||||||||| |||||||||||    
T  26966203 tcgcatgacagtgcaaatagccagatgactacagatggtgtcctgacaatgtacagtcaaagaacaagtaaaagcttagttttggtttgagaaaagttg 26966105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 187
Target Start/End: Complemental strand, 26890177 - 26890000
Alignment:
Q  11 acctctggatatctcgcatgacaatgcaattagccagatgaccacagatggatccctgataaagtacagtcaaagaacaggtaattctt-agttttggtt 109  Q
    |||||| || ||||| ||||||| |  || |||||||||||| |||||| | | ||||| || ||||||||||| || |  ||| | || ||||||||||    
T  26890177 acctctagacatctcccatgacagtaaaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggtt 26890078  T
Q  110 agagaaaagttgtgtaaactaccgacaacaggctgaaatcgtcggggatggattctccatgttcaactttatgagaga 187  Q
    |||||||||||||| |||  ||| ||||||||||||| || ||||   | |||||| |||||| || |||||||||||    
T  26890077 agagaaaagttgtgcaaataaccaacaacaggctgaattcatcggcacttgattcttcatgtttaattttatgagaga 26890000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 725 - 809
Target Start/End: Complemental strand, 27079057 - 27078974
Alignment:
Q  725 atgcacctagactaaggaatgtaccacatgtctttctttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatc 809  Q
    |||||||||||| |||||||||||| ||||||||||||| |||| ||||  |||| |||| ||||||||| ||||| ||||||||    
T  27079057 atgcacctagacaaaggaatgtaccccatgtctttctttcttccacttttatcaattccttttgttgcaacgaagc-ttgatatc 27078974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 552 - 620
Target Start/End: Complemental strand, 25986842 - 25986776
Alignment:
Q  552 gactatatacagaaattaatcaacatttgtaaacagcaaaccacaaacctccattgttgagattgagag 620  Q
    |||||||||||||||||||||||||||  || ||| |||| ||||||||| || |||||||||||||||    
T  25986842 gactatatacagaaattaatcaacatt--tatacaacaaagcacaaacctgcaatgttgagattgagag 25986776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 625 - 666
Target Start/End: Original strand, 27423938 - 27423979
Alignment:
Q  625 ctttatgatggacctagaccaaggaatgtacccaacatcttt 666  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  27423938 ctttatgatgaacctagaccaaggaatgtacccaacatcttt 27423979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 257 - 311
Target Start/End: Complemental strand, 26629222 - 26629167
Alignment:
Q  257 tgatataagatgaagtttgtatctaatttgacctg-tggacaaaagctacatattt 311  Q
    |||||||||||||| |||||||||||||||||||| |||||||||| |||| ||||    
T  26629222 tgatataagatgaaatttgtatctaatttgacctgttggacaaaagatacagattt 26629167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 259 - 317
Target Start/End: Complemental strand, 26639961 - 26639902
Alignment:
Q  259 atataagatgaagtttgtatctaatttgacctg-tggacaaaagctacatatttacatta 317  Q
    |||||||||||||| |||||||||||||||||| ||||| ||||| ||| ||||||||||    
T  26639961 atataagatgaagtgtgtatctaatttgacctgttggacgaaagcaacacatttacatta 26639902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 26650716 - 26650681
Alignment:
Q  257 tgatataagatgaagtttgtatctaatttgacctgt 292  Q
    ||||||||||||||||||||||||||||||||||||    
T  26650716 tgatataagatgaagtttgtatctaatttgacctgt 26650681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 257 - 311
Target Start/End: Complemental strand, 26735198 - 26735143
Alignment:
Q  257 tgatataagatgaagtttgtatctaatttgacctg-tggacaaaagctacatattt 311  Q
    |||||||||||||| |||||||||||||||||||| |||||||||| |||| ||||    
T  26735198 tgatataagatgaaatttgtatctaatttgacctgttggacaaaagatacagattt 26735143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 259 - 317
Target Start/End: Complemental strand, 26745927 - 26745868
Alignment:
Q  259 atataagatgaagtttgtatctaatttgacctg-tggacaaaagctacatatttacatta 317  Q
    |||||||||||||| |||||||||||||||||| ||||| ||||| ||| ||||||||||    
T  26745927 atataagatgaagtgtgtatctaatttgacctgttggacgaaagcaacacatttacatta 26745868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 26756684 - 26756649
Alignment:
Q  257 tgatataagatgaagtttgtatctaatttgacctgt 292  Q
    ||||||||||||||||||||||||||||||||||||    
T  26756684 tgatataagatgaagtttgtatctaatttgacctgt 26756649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 411 - 482
Target Start/End: Complemental strand, 26889027 - 26888957
Alignment:
Q  411 gagaagtgtttgtgctacaaagcatcctcaaatgtaaattgaaacaatattttaagattgcacaaacatcat 482  Q
    ||||||||| |||||||||||||||| || |  |||||||||||||||||||| ||| ||||||||| ||||    
T  26889027 gagaagtgtatgtgctacaaagcatcttccacagtaaattgaaacaatatttt-agactgcacaaacttcat 26888957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 26963957 - 26963922
Alignment:
Q  257 tgatataagatgaagtttgtatctaatttgacctgt 292  Q
    ||||||||||||||||||||||||||||||||||||    
T  26963957 tgatataagatgaagtttgtatctaatttgacctgt 26963922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 257 - 311
Target Start/End: Original strand, 27423010 - 27423065
Alignment:
Q  257 tgatataagatgaagtttgtatctaatttgacctg-tggacaaaagctacatattt 311  Q
    |||||||||||||||||||||||||| |||||||| |||||||||| |||| ||||    
T  27423010 tgatataagatgaagtttgtatctaaattgacctgttggacaaaagatacacattt 27423065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 117
Target Start/End: Complemental strand, 26651209 - 26651115
Alignment:
Q  24 tcgcatgacaatgcaattagccagatgaccacagatggatccctgataaagtacagtcaaagaac-aggtaattcttagttttggttagagaaaa 117  Q
    |||||||||||||||  ||| ||| |||| |||||||| | ||||| || |||||| |||||||| || |||||| |||||||||||| ||||||    
T  26651209 tcgcatgacaatgcacatagacaggtgactacagatggtttcctgacaatgtacagacaaagaacaagttaattcgtagttttggttaaagaaaa 26651115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 117
Target Start/End: Complemental strand, 26757177 - 26757083
Alignment:
Q  24 tcgcatgacaatgcaattagccagatgaccacagatggatccctgataaagtacagtcaaagaac-aggtaattcttagttttggttagagaaaa 117  Q
    |||||||||||||||  ||| ||| |||| |||||||| | ||||| || |||||| |||||||| || |||||| |||||||||||| ||||||    
T  26757177 tcgcatgacaatgcacatagacaggtgactacagatggtttcctgacaatgtacagacaaagaacaagttaattcgtagttttggttaaagaaaa 26757083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 644 - 694
Target Start/End: Original strand, 27662009 - 27662059
Alignment:
Q  644 caaggaatgtacccaacatctttctttcatcttgtgcactgcttaatattt 694  Q
    |||||||||||||| |||| ||||||||||||||| ||||| |||||||||    
T  27662009 caaggaatgtaccccacatatttctttcatcttgtccactgtttaatattt 27662059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 121
Target Start/End: Complemental strand, 26631553 - 26631461
Alignment:
Q  30 gacaatgcaattagccagatgaccacagatggatccctgataaagtacagtcaaagaacaggtaatt-cttagttttggttagagaaaagttg 121  Q
    |||||||||| | |||||||||| |||||||| | ||||| || ||||| || |||| || |||| | ||| |||||||||||||||||||||    
T  26631553 gacaatgcaagtggccagatgactacagatggcttcctgaaaatgtacattccaagagcaagtaaatgctttgttttggttagagaaaagttg 26631461  T

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Target: chr6; HSP #45
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 121
Target Start/End: Complemental strand, 26737528 - 26737436
Alignment:
Q  30 gacaatgcaattagccagatgaccacagatggatccctgataaagtacagtcaaagaacaggtaatt-cttagttttggttagagaaaagttg 121  Q
    |||||||||| | |||||||||| |||||||| | ||||| || ||||| || |||| || |||| | ||| |||||||||||||||||||||    
T  26737528 gacaatgcaagtggccagatgactacagatggcttcctgaaaatgtacattccaagagcaagtaaatgctttgttttggttagagaaaagttg 26737436  T

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Target: chr6; HSP #46
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 322 - 358
Target Start/End: Complemental strand, 26963817 - 26963781
Alignment:
Q  322 tctttttcaaatgatctttcataaagattatgattaa 358  Q
    ||||||||||| |||||||||||||||||||||||||    
T  26963817 tctttttcaaaagatctttcataaagattatgattaa 26963781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 721 - 760
Target Start/End: Complemental strand, 26852297 - 26852258
Alignment:
Q  721 tttgatgcacctagactaaggaatgtaccacatgtctttc 760  Q
    ||||||||||||||||||||||||||||| || |||||||    
T  26852297 tttgatgcacctagactaaggaatgtaccccaagtctttc 26852258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 255 - 317
Target Start/End: Original strand, 27506847 - 27506910
Alignment:
Q  255 tatgatataagatgaagtttgtatctaatttgacctg-tggacaaaagctacatatttacatta 317  Q
    |||||||||||||||||||| |||||||||| || || |||||||||||||   ||||||||||    
T  27506847 tatgatataagatgaagtttctatctaatttcacttgttggacaaaagctatccatttacatta 27506910  T

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Target: chr6; HSP #49
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 541 - 579
Target Start/End: Complemental strand, 25514536 - 25514498
Alignment:
Q  541 aatttttaattgactatatacagaaattaatcaacattt 579  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  25514536 aatttgtaactgactatatacagaaattaatcaacattt 25514498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 541 - 579
Target Start/End: Complemental strand, 26146696 - 26146658
Alignment:
Q  541 aatttttaattgactatatacagaaattaatcaacattt 579  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  26146696 aatttgtaactgactatatacagaaattaatcaacattt 26146658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 368 - 461
Target Start/End: Complemental strand, 26806348 - 26806255
Alignment:
Q  368 gtgttggacacagacacatgttggatacca-acatgctttcaatgagaagtgtttgtgctacaaagcatcctcaaatgtaaattgaaacaatatt 461  Q
    |||||| | ||| |||||||||||  |||| |||||||| ||| | ||||||||||||||||||| |||||||||   |||||| ||||||||||    
T  26806348 gtgttgaaaacaaacacatgttgggcaccagacatgctt-caacgggaagtgtttgtgctacaaaacatcctcaacattaaattcaaacaatatt 26806255  T

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Target: chr6; HSP #52
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 410 - 464
Target Start/End: Original strand, 27423823 - 27423877
Alignment:
Q  410 tgagaagtgtttgtgctacaaagcatcctcaaatgtaaattgaaacaatatttta 464  Q
    |||||||||| ||||||||||||||||||| |  |||| ||||| ||||||||||    
T  27423823 tgagaagtgtatgtgctacaaagcatcctccacagtaagttgaagcaatatttta 27423877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 322 - 359
Target Start/End: Complemental strand, 26629086 - 26629049
Alignment:
Q  322 tctttttcaaatgatctttcataaagattatgattaaa 359  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  26629086 tctttttcagaagatctttcataaagattatgattaaa 26629049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 322 - 359
Target Start/End: Complemental strand, 26650578 - 26650541
Alignment:
Q  322 tctttttcaaatgatctttcataaagattatgattaaa 359  Q
    |||| |||||| ||||||||||||||||||||||||||    
T  26650578 tcttcttcaaaagatctttcataaagattatgattaaa 26650541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 322 - 359
Target Start/End: Complemental strand, 26735062 - 26735025
Alignment:
Q  322 tctttttcaaatgatctttcataaagattatgattaaa 359  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  26735062 tctttttcagaagatctttcataaagattatgattaaa 26735025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 322 - 359
Target Start/End: Complemental strand, 26756546 - 26756509
Alignment:
Q  322 tctttttcaaatgatctttcataaagattatgattaaa 359  Q
    |||| |||||| ||||||||||||||||||||||||||    
T  26756546 tcttcttcaaaagatctttcataaagattatgattaaa 26756509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 579 - 620
Target Start/End: Complemental strand, 27079126 - 27079085
Alignment:
Q  579 tgtaaacagcaaaccacaaacctccattgttgagattgagag 620  Q
    ||||||||||||| ||||||||| || |||||||||||||||    
T  27079126 tgtaaacagcaaagcacaaaccttcaatgttgagattgagag 27079085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 322 - 359
Target Start/End: Original strand, 27588951 - 27588988
Alignment:
Q  322 tctttttcaaatgatctttcataaagattatgattaaa 359  Q
    ||||||||||| ||||||||| ||||||||||||||||    
T  27588951 tctttttcaaaagatctttcacaaagattatgattaaa 27588988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 4e-37; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 729 - 816
Target Start/End: Original strand, 29270364 - 29270451
Alignment:
Q  729 acctagactaaggaatgtaccacatgtctttctttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctct 816  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29270364 acctagactaaggtatgtaccccatgtctttctttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctct 29270451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 29270045 - 29270149
Alignment:
Q  24 tcgcatgacaatgcaattagccagatgaccacagatggatccctgataaagtacagtcaaagaac-aggtaattcttagttttggttagagaaaagttgt 122  Q
    |||||||||||||||| |||||||||||| |||  ||| | ||||| || ||||||||||||||| ||  ||| |||||||||||||||||||||||||     
T  29270045 tcgcatgacaatgcaaatagccagatgactacatgtggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgc 29270144  T
Q  123 gtaaa 127  Q
    |||||    
T  29270145 gtaaa 29270149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 761 - 816
Target Start/End: Complemental strand, 16852 - 16797
Alignment:
Q  761 tttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctct 816  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  16852 tttgttcctctttcgtcaaatcctgctgttgcaatgaagcattgatatcctcctct 16797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 17792 - 17688
Alignment:
Q  24 tcgcatgacaatgcaattagccagatgaccacagatggatccctgataaagtacagtcaaagaac-aggtaattcttagttttggttagagaaaagttgt 122  Q
    |||||||||||||||| |||||||||||| |||  ||| | ||||| || ||||||||||||||| ||  ||| |||||||||||||||||||||||||     
T  17792 tcgcatgacaatgcaaatagccagatgactacatgtggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgc 17693  T
Q  123 gtaaa 127  Q
    |||||    
T  17692 gtaaa 17688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 51; Significance: 9e-20; HSPs: 4)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 64824 - 64726
Alignment:
Q  24 tcgcatgacaatgcaattagccagatgaccacagatggatccctgataaagtacagtcaaagaacaggt-aattcttagttttggttagagaaaagttg 121  Q
    |||||||||||||||| |||||||||||| |||||||| | ||||| || |||||| ||||||||| || ||| ||||||||| |||||||||||||||    
T  64824 tcgcatgacaatgcaaatagccagatgactacagatggtttcctgacaatgtacagacaaagaacaagtaaatgcttagttttcgttagagaaaagttg 64726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 625 - 666
Target Start/End: Complemental strand, 63425 - 63384
Alignment:
Q  625 ctttatgatggacctagaccaaggaatgtacccaacatcttt 666  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  63425 ctttatgatgaacctagaccaaggaatgtacccaacatcttt 63384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 257 - 311
Target Start/End: Complemental strand, 64353 - 64298
Alignment:
Q  257 tgatataagatgaagtttgtatctaatttgacctg-tggacaaaagctacatattt 311  Q
    |||||||||||||||||||||||||| |||||||| |||||||||| |||| ||||    
T  64353 tgatataagatgaagtttgtatctaaattgacctgttggacaaaagatacacattt 64298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 410 - 464
Target Start/End: Complemental strand, 63540 - 63486
Alignment:
Q  410 tgagaagtgtttgtgctacaaagcatcctcaaatgtaaattgaaacaatatttta 464  Q
    |||||||||| ||||||||||||||||||| |  |||| ||||| ||||||||||    
T  63540 tgagaagtgtatgtgctacaaagcatcctccacagtaagttgaagcaatatttta 63486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 18692521 - 18692561
Alignment:
Q  97 cttagttttggttagagaaaagttgtgtaaactaccgacaa 137  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  18692521 cttagttttggttagagaaaagttgtgtaaattaccgacaa 18692561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 18719020 - 18719060
Alignment:
Q  97 cttagttttggttagagaaaagttgtgtaaactaccgacaa 137  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  18719020 cttagttttggttagagaaaagttgtgtaaattaccgacaa 18719060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 18674450 - 18674490
Alignment:
Q  97 cttagttttggttagagaaaagttgtgtaaactaccgacaa 137  Q
    ||||||||||||||||||||||||||||||| |||| ||||    
T  18674450 cttagttttggttagagaaaagttgtgtaaattaccaacaa 18674490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 491 - 552
Target Start/End: Complemental strand, 26140203 - 26140142
Alignment:
Q  491 tattacatcatgtctcatcatttgaaaaacttctccaactagaaacaacaaatttttaattg 552  Q
    |||||||||| |||||||||||| ||||||||||| | ||||||| ||  ||||| ||||||    
T  26140203 tattacatcaggtctcatcatttcaaaaacttctctagctagaaataatgaatttgtaattg 26140142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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