View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4813-Insertion-22 (Length: 283)
Name: NF4813-Insertion-22
Description: NF4813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4813-Insertion-22 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 49 - 283
Target Start/End: Original strand, 25910491 - 25910725
Alignment:
| Q |
49 |
gaaaaatgctaaatagcacgataactttttcgtgctaatcacaccaatgctttttcttatgcttagttgaccttatcaaacacgttgctctccattttta |
148 |
Q |
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|||||||||||||||||| |||||| |||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
25910491 |
gaaaaatgctaaatagcaggataacattttcgtgctaatcacgcgaatgctatttcttatgcttagttgaccttatcaaacacgtttctctccattttta |
25910590 |
T |
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| Q |
149 |
tgctgtgttttcatcttcacatccccttctccatttttattttgctcgtaatgcacaatcctcatccatttgaaacaatatggtttaatgtgaaatgatg |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25910591 |
tgctgtgttttcatcttcacatccccttctccatttttattttgctcgtaatgcacaatcctcgtccatttgaaacaatatggtttaatgtgaaatgatg |
25910690 |
T |
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| Q |
249 |
aatatttagattgttttgtgatgatatctacctgc |
283 |
Q |
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| T |
25910691 |
aatatttagattgttttgtgatgatatctacctgc |
25910725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 48 - 278
Target Start/End: Complemental strand, 38879691 - 38879456
Alignment:
| Q |
48 |
agaaaaatgctaaatagcacgataactttttcgtgctaatcacaccaatgctttttcttatgcttagttgaccttatcaaacacgttgctctccattttt |
147 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
38879691 |
agaaaaatgctaaatagcacgataactttttcgtgctaatcacacgaatgctatttcttatgcttagttgaccttatcaaacatatttctctccattttt |
38879592 |
T |
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| Q |
148 |
atgctgtgttttcatcttcacatccccttctccatttttattttgctcgtaat-----gcacaatcctcatccatttgaaacaatatggtttaatgtgaa |
242 |
Q |
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| T |
38879591 |
atgctgtgttttcatcttcatatccccttctccatttttattttgctcgtaatgcactgcacaatcctcgtccatttgaaacaatatggtttaatgtgaa |
38879492 |
T |
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| Q |
243 |
atgatgaatatttagattgttttgtgatgatatcta |
278 |
Q |
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| T |
38879491 |
atgatgaatatttagattgttttgtgatgatatcta |
38879456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 44634143 - 44634183
Alignment:
| Q |
8 |
actttaattttccatgtacttcgaatccatatttaatttta |
48 |
Q |
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| T |
44634143 |
actttaattttccatgtacttcgaatccatatttaatttta |
44634183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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