View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4813-Insertion-24 (Length: 223)

Name: NF4813-Insertion-24
Description: NF4813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4813-Insertion-24
NF4813-Insertion-24
[»] chr6 (4 HSPs)
chr6 (8-223)||(34770866-34771081)
chr6 (70-223)||(34781215-34781365)
chr6 (166-223)||(11549499-11549556)
chr6 (76-123)||(34777675-34777720)


Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 34771081 - 34770866
Alignment:
Q  8 gttagctctttttattattgttattatagataagatcacagtagttattgataagttaggattttgtaaaaattgaatggaataaaatggattatatagt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34771081 gttagctctttttattattgttattatagataagatcacagtagttattgataagttaggattttgtaaaaattgaatggaataaaatggattatatagt 34770982  T
Q  108 agaatgcattccatcatatactatcatctcttattatttttcattccctcaaatgaaacatcttaattttgtaattactattttatccctgatcttttat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34770981 agaatgcattccatcatatactatcatctcttattatttttcattccctcaaatgaaacatcttaattttgtaattactattttatccctgatcttttat 34770882  T
Q  208 ttgaaaaagtagtgtg 223  Q
    ||||||||||||||||    
T  34770881 ttgaaaaagtagtgtg 34770866  T

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Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 70 - 223
Target Start/End: Complemental strand, 34781365 - 34781215
Alignment:
Q  70 tttgtaaaaattgaatggaataaaatggattatatagtagaatgcattccatcatatactatcatctcttattatttttcattccctcaaatgaaacatc 169  Q
    ||||||||||||||||||||||||||||||  |||| || |||||||| |||| ||||| |||||||||||||||||||| ||||  |  ||||||||||    
T  34781365 tttgtaaaaattgaatggaataaaatggat--tataatataatgcatttcatcgtataccatcatctcttattatttttctttcctcc--atgaaacatc 34781270  T
Q  170 ttaattttgtaattactattttatccctgatc-ttttatttgaaaaagtagtgtg 223  Q
    ||||||||  ||||||||||||||| || ||| ||||||||||| ||||||||||    
T  34781269 ttaattttaaaattactattttatctctaatctttttatttgaacaagtagtgtg 34781215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 11549556 - 11549499
Alignment:
Q  166 catcttaattttgtaattactattttatccctgatcttttatttgaaaaagtagtgtg 223  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11549556 catcttaattttgtaattactattctatccctgatcttttatttgaaaaagtagtgtg 11549499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 34777720 - 34777675
Alignment:
Q  76 aaaattgaatggaataaaatggattatatagtagaatgcattccatca 123  Q
    ||||||||||||||||||||||||   ||||||||||| |||||||||    
T  34777720 aaaattgaatggaataaaatggat--gatagtagaatggattccatca 34777675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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