View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4813-Insertion-3 (Length: 693)

Name: NF4813-Insertion-3
Description: NF4813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4813-Insertion-3
NF4813-Insertion-3
[»] chr4 (1 HSPs)
chr4 (8-693)||(42893109-42893800)
[»] chr2 (1 HSPs)
chr2 (510-573)||(8705688-8705751)


Alignment Details
Target: chr4 (Bit Score: 552; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 8 - 693
Target Start/End: Complemental strand, 42893800 - 42893109
Alignment:
Q  8 caaagggccaattatccttgaagaaacacgtacgacgaaatatcccattcaatttcacctacaaatccatgttatgcgtttattcaattcagtaagggaa 107  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42893800 caaagggccaattatccttgaagaaacacgtacgacgaaatatctcattcaatttcacctacaaatccatgttatgcgtttattcaattcagtaagggaa 42893701  T
Q  108 tttggtcacnnnnnnnnnnn-------tcagcaagggaacagactccctcatagcatacagtgacggaatattagagtttcaaacaaagcatgtgcaaat 200  Q
    |||||||||                  ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  42893700 tttggtcacaaaaaaaaaaaaaaaaaatcagcaagggaacagactccctcatagcatacagtgatggaatattagaatttcaaacaaagcatgtgcaaat 42893601  T
Q  201 taccccctaatgtaatgaaaaggcgtagtagccgttctagcaaagtgtgtcgtgtaaaacggatatgtagcatacgagagaagaatataacataaatata 300  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  42893600 taccccctaatgtaatgaaaaggcgtagtggccgttctagcaaagtgtgtcgtgtaaaacggatatgtagcatacgagagaagaatataacataaacata 42893501  T
Q  301 gcttggtgcttaacnnnnnnnnnnnnnngcttggtctaaattaatcaaaagaatattagccaatccttatcaacattcaaaaagtcatccacacttacct 400  Q
    ||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42893500 gcttggtgcttaacaaaaactaaaaaaagcttggtctaaattaatcaaaagaatattagccaatccttatcaacattcaaaaagtcatccacacttacct 42893401  T
Q  401 tatgactattagaaaatagaaatcaatagcaacatgtaaattataagttggtagaaattattacagaaaagcactcaacataaactggctagtttctttt 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  42893400 tatgactattagaaaatagaaatcaatagcaacatgtaaattataagttggtagaaattattacagaaaagcactcaacacaaactggctagtttctttt 42893301  T
Q  501 tgtataggcatgaaattatttgctattcaccatcaaacatcgaaaacattctctaatcaatgacaaccaagacatttactatcactaaaacatcactcaa 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42893300 tgtataggcatgaaattatttgctattcaccatcaaacatcgaaaacattctctaatcaatgacaaccaagacatgtactatcactaaaacatcactcaa 42893201  T
Q  601 tgggaaaagaaataaaagcaaatggaccttgaaatcttagcgggcaagctgcttttcatcaaagcgttgctagggttacatcgacagacaggt 693  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  42893200 tgggaaaagaaataaaagcaaatggaccttgaaatcttagcgggcaagctgcttttcatcaaagcgttgcta-agttacatcgacagacaggt 42893109  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 510 - 573
Target Start/End: Original strand, 8705688 - 8705751
Alignment:
Q  510 atgaaattatttgctattcaccatcaaacatcgaaaacattctctaatcaatgacaaccaagac 573  Q
    ||||||| || || ||||||||||||||||| ||| ||||| ||||| ||||||||||||||||    
T  8705688 atgaaatcatatgttattcaccatcaaacattgaacacattttctaaacaatgacaaccaagac 8705751  T

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