View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4813-Insertion-4 (Length: 705)
Name: NF4813-Insertion-4
Description: NF4813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4813-Insertion-4 |
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Alignment Details
Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 8 - 456
Target Start/End: Original strand, 30614247 - 30614685
Alignment:
| Q |
8 |
cattattcccatatcagtgtctaggcatagaaatgtggaaatgagattcttcgggttgttttcttaagttacattctcttcaatgaattata--acttgt |
105 |
Q |
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| T |
30614247 |
cattattcccatatcagtgtctaggcatagaaatgtggaaatgagattcttcgggttgttttcttaagttacattctcttcgatgaattatataacttgt |
30614346 |
T |
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| Q |
106 |
ggtatgatgaacatcatatttgagcttgatcgtaaacaagtaattgatatttgataatttgcttaatgtaaaacataatagatcagaatatgattctatt |
205 |
Q |
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| T |
30614347 |
ggtatgatgaacatcatatttgagcttgatcgtaaacaagtaattgatatttgataattttcttaatgtaaaacttaatagatcagaatatgattctatt |
30614446 |
T |
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| Q |
206 |
agtgagggttgtagggcaattttagtgctaacaggaacttacaatagttatttttgttagacgacaatctaatagtagcactctctttgaaaagggtgtc |
305 |
Q |
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| T |
30614447 |
agtgagggttgtagggccattttagtgctaacaggaacttacgatagttatttttgttagacgacaatctaatagtagcactgtctttgaaaagggtgtc |
30614546 |
T |
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| Q |
306 |
aatcagttaacttat-----aatgaaataagataacttggttcgagtaaaaaatatgtgaatgaattaaatatgtgaatgaattaaatataacttatttt |
400 |
Q |
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| T |
30614547 |
tatcagttaacttatcttacaatgaaataagataacttggttagagtaaaaaatatgtgaat-----------------gaattaaatataacttatttt |
30614629 |
T |
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| Q |
401 |
ttatactatctcttatagttcttacaatgaaataagttaacttggttcgagtaaaa |
456 |
Q |
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| T |
30614630 |
ttactctatctcttatagttcttacaatgaaataagttaacttggttcgagtaaaa |
30614685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 582 - 704
Target Start/End: Original strand, 30614791 - 30614913
Alignment:
| Q |
582 |
aatagaattcctttaatttgttgttggtagcttttaaaagatctcactttaggcttataaacttgttgaatgggctttgagatggatatattatataaag |
681 |
Q |
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| T |
30614791 |
aatagaattcctttaatttgttgttggtagcttttaaaagatctcactttaggcttataaacttgttgaatgggctttgagatggatatattatataaag |
30614890 |
T |
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| Q |
682 |
agggataactttatttatttttt |
704 |
Q |
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| T |
30614891 |
agggataactttttttttttttt |
30614913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 316 - 373
Target Start/End: Original strand, 30614650 - 30614707
Alignment:
| Q |
316 |
cttataatgaaataagataacttggttcgagtaaaaaatatgtgaatgaattaaatat |
373 |
Q |
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| T |
30614650 |
cttacaatgaaataagttaacttggttcgagtaaaaattatgtgaatgaattaaatat |
30614707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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